ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC016229.10| Homo sapiens chromosome 18, clone RP11-27G24, co... 44 0.35
2ref|XM_473065.1| Oryza sativa (japonica cultivar-group), predic... 42 1.4
3emb|AL356513.15| Human DNA sequence from clone RP11-108A15 on ch... 42 1.4
4gb|AC023725.5| Drosophila melanogaster X BAC RP98-9I10 (Roswell ... 42 1.4
5gb|AC105352.2| Drosophila melanogaster X BAC RP98-45O17 (Roswell... 42 1.4
6gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell... 42 1.4
7gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome... 42 1.4
8gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, com... 42 1.4
9gb|AC009533.10| Homo sapiens 12 BAC RP11-22B23 (Roswell Park Can... 42 1.4
10gb|AC010175.4| Homo sapiens 12 BAC RP11-118B22 (Roswell Park Can... 42 1.4
11dbj|AK120981.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
12dbj|AK105595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
13dbj|AK103837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
14dbj|AK100704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
15gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 ... 42 1.4
16gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete... 40 5.5
17gb|AC125048.2| Mus musculus BAC clone RP23-364E18 from 5, comple... 40 5.5
18ref|XM_847720.1| PREDICTED: Canis familiaris similar to centrome... 40 5.5
19emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chr... 40 5.5
20emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chr... 40 5.5
21gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, compl... 40 5.5
22gb|AC092295.2| Homo sapiens chromosome 19 clone CTD-2630F21, com... 40 5.5
23gb|AC074138.5| Homo sapiens chromosome 19 clone CTD-3234P18, com... 40 5.5
24gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complet... 40 5.5
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
26gb|AC009756.9|AC009756 Homo sapiens, clone RP11-45P2, complete s... 40 5.5
27emb|AL672214.8| Mouse DNA sequence from clone RP23-161C9 on chro... 40 5.5
28dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
29dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
30emb|AL929019.4| Zebrafish DNA sequence from clone CH211-149L13, ... 40 5.5
31gb|AE001439.1| Helicobacter pylori J99, complete genome 40 5.5
32emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, ... 40 5.5
33gb|AC142100.3| Mus musculus BAC clone RP24-366C18 from 18, compl... 40 5.5
34emb|CR407703.23| Zebrafish DNA sequence from clone CH211-141H12 ... 40 5.5

>gb|AC016229.10| Homo sapiens chromosome 18, clone RP11-27G24, complete sequence
          Length = 149787

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 333   aaaaaaccctggaaaccaagcaaatg 358
             |||||||||||||||| |||||||||
Sbjct: 69735 aaaaaaccctggaaacaaagcaaatg 69760



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>ref|XM_473065.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2136

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 316 actcatcatcctctgacaaaa 336
           |||||||||||||||||||||
Sbjct: 561 actcatcatcctctgacaaaa 541



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>emb|AL356513.15| Human DNA sequence from clone RP11-108A15 on chromosome X Contains the
             3' end of a novel gene similar to Chic1 (LOC349423)and a
             selenophosphate synthetase (SPS) pseudogene, complete
             sequence
          Length = 180619

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 269   acatggatgaaccagaaacca 289
             |||||||||||||||||||||
Sbjct: 44477 acatggatgaaccagaaacca 44457



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>gb|AC023725.5| Drosophila melanogaster X BAC RP98-9I10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 165928

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 157    cacacgcacacaaaattccaa 177
              |||||||||||||||||||||
Sbjct: 109827 cacacgcacacaaaattccaa 109847



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>gb|AC105352.2| Drosophila melanogaster X BAC RP98-45O17 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 172784

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 157    cacacgcacacaaaattccaa 177
              |||||||||||||||||||||
Sbjct: 144837 cacacgcacacaaaattccaa 144857



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>gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 181831

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 157    cacacgcacacaaaattccaa 177
              |||||||||||||||||||||
Sbjct: 159030 cacacgcacacaaaattccaa 159010



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>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence
          Length = 166104

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 243   ttcttcccatcccaccatcagccta 267
             ||||||||||||||||||| |||||
Sbjct: 79289 ttcttcccatcccaccatctgccta 79313



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>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence
          Length = 174210

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 89     cacacagacaatgttgacaac 109
              |||||||||||||||||||||
Sbjct: 137629 cacacagacaatgttgacaac 137609



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>gb|AC009533.10| Homo sapiens 12 BAC RP11-22B23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162572

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 239    cttcttcttcccatcccacca 259
              |||||||||||||||||||||
Sbjct: 123899 cttcttcttcccatcccacca 123879



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>gb|AC010175.4| Homo sapiens 12 BAC RP11-118B22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 127277

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 239    cttcttcttcccatcccacca 259
              |||||||||||||||||||||
Sbjct: 110895 cttcttcttcccatcccacca 110915



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>dbj|AK120981.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042B20, full
            insert sequence
          Length = 3625

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 376  ttggctcctagacaatgttgg 396
            |||||||||||||||||||||
Sbjct: 3089 ttggctcctagacaatgttgg 3069



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>dbj|AK105595.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-129-B02, full
            insert sequence
          Length = 2173

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 376  ttggctcctagacaatgttgg 396
            |||||||||||||||||||||
Sbjct: 1637 ttggctcctagacaatgttgg 1617



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>dbj|AK103837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148G19, full
           insert sequence
          Length = 2585

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 316 actcatcatcctctgacaaaa 336
           |||||||||||||||||||||
Sbjct: 655 actcatcatcctctgacaaaa 635



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>dbj|AK100704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114P05, full
            insert sequence
          Length = 3625

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 376  ttggctcctagacaatgttgg 396
            |||||||||||||||||||||
Sbjct: 3089 ttggctcctagacaatgttgg 3069



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>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete
              sequence
          Length = 326403

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 157    cacacgcacacaaaattccaa 177
              |||||||||||||||||||||
Sbjct: 319584 cacacgcacacaaaattccaa 319564



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>gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete sequence
          Length = 138404

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   agacagatactccacaaagt 205
             ||||||||||||||||||||
Sbjct: 98671 agacagatactccacaaagt 98652



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>gb|AC125048.2| Mus musculus BAC clone RP23-364E18 from 5, complete sequence
          Length = 190505

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 163   cacacaaaattccaaaccaaaata 186
             |||||||||||| |||||||||||
Sbjct: 28219 cacacaaaattcaaaaccaaaata 28242



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>ref|XM_847720.1| PREDICTED: Canis familiaris similar to centromere protein F
            (350/400kD) (LOC610263), mRNA
          Length = 4350

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  agaaaccagcttcatggaca 301
            ||||||||||||||||||||
Sbjct: 2326 agaaaccagcttcatggaca 2345



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>emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chromosome X, complete
             sequence
          Length = 22695

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 333   aaaaaaccctggaaaccaagcaaatgcc 360
             ||||| |||||||||||||||| |||||
Sbjct: 15400 aaaaatccctggaaaccaagcagatgcc 15373



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>emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the
             5' end of a novel gene, two novel genes, the Taok1 gene
             for TAO kinase 1, a eukaryotic translation initiation
             factor 2 subunit 1 alpha (Eif2s1) pseudogene, a ribosomal
             protein S2 (Rps2) pseudogene, the Cryba1 gene for
             crystallin beta A1 and two CpG islands, complete sequence
          Length = 220230

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    ataacaacacacacagacaa 99
             ||||||||||||||||||||
Sbjct: 65918 ataacaacacacacagacaa 65937



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>gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, complete sequence
          Length = 191499

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    ctgctatatgatttgatttg 233
              ||||||||||||||||||||
Sbjct: 187456 ctgctatatgatttgatttg 187437



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>gb|AC092295.2| Homo sapiens chromosome 19 clone CTD-2630F21, complete sequence
          Length = 165566

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 331    acaaaaaaccctggaaacca 350
              ||||||||||||||||||||
Sbjct: 115422 acaaaaaaccctggaaacca 115441



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>gb|AC074138.5| Homo sapiens chromosome 19 clone CTD-3234P18, complete sequence
          Length = 200418

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   acaaaaaaccctggaaacca 350
             ||||||||||||||||||||
Sbjct: 22691 acaaaaaaccctggaaacca 22710



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>gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complete sequence
          Length = 219476

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    cagcttcatggacacatgac 307
              ||||||||||||||||||||
Sbjct: 114792 cagcttcatggacacatgac 114773



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 163     cacacaaaattccaaaccaaaata 186
               ||||||||| ||||||||||||||
Sbjct: 5782574 cacacaaaaatccaaaccaaaata 5782551



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>gb|AC009756.9|AC009756 Homo sapiens, clone RP11-45P2, complete sequence
          Length = 178624

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 331    acaaaaaaccctggaaacca 350
              ||||||||||||||||||||
Sbjct: 120867 acaaaaaaccctggaaacca 120886



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>emb|AL672214.8| Mouse DNA sequence from clone RP23-161C9 on chromosome X, complete
             sequence
          Length = 47355

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   gctatatgatttgatttggc 235
             ||||||||||||||||||||
Sbjct: 15902 gctatatgatttgatttggc 15921



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>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0544H11
          Length = 178376

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 163   cacacaaaattccaaaccaaaata 186
             ||||||||| ||||||||||||||
Sbjct: 12376 cacacaaaaatccaaaccaaaata 12353



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>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1135_F06
          Length = 102230

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 163   cacacaaaattccaaaccaaaata 186
             ||||||||| ||||||||||||||
Sbjct: 72088 cacacaaaaatccaaaccaaaata 72065



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>emb|AL929019.4| Zebrafish DNA sequence from clone CH211-149L13, complete sequence
          Length = 149316

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 79   aataacaacacacacagaca 98
            ||||||||||||||||||||
Sbjct: 5092 aataacaacacacacagaca 5073



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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    atggatgaaccagaaaccag 290
              ||||||||||||||||||||
Sbjct: 328902 atggatgaaccagaaaccag 328883



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>emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, complete sequence
          Length = 180436

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    ccaccatcagcctacacatg 273
              ||||||||||||||||||||
Sbjct: 107879 ccaccatcagcctacacatg 107898



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>gb|AC142100.3| Mus musculus BAC clone RP24-366C18 from 18, complete sequence
          Length = 175110

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   agaactcttccacacgcaca 166
             ||||||||||||||||||||
Sbjct: 82753 agaactcttccacacgcaca 82772



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>emb|CR407703.23| Zebrafish DNA sequence from clone CH211-141H12 in linkage group 9,
             complete sequence
          Length = 150766

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    aataacaacacacacagaca 98
             ||||||||||||||||||||
Sbjct: 94620 aataacaacacacacagaca 94639


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,076,967
Number of Sequences: 3902068
Number of extensions: 5076967
Number of successful extensions: 99017
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98943
Number of HSP's gapped (non-prelim): 74
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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