ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VG12_SHV21 (P24915) Hypothetical gene 12 protein 29 2.3
2NIN_HUMAN (Q8N4C6) Ninein (hNinein) 29 3.0
3YWV1_CAEEL (Q11075) Hypothetical protein B0403.1 29 3.0
4Y098_NPVOP (O10343) Hypothetical 36.0 kDa protein (ORF99) 28 5.2
5CID16_SCHPO (O13798) Caffeine-induced protein 16 28 5.2
6RNFC_BUCAI (P57215) Electron transport complex protein rnfC 28 6.8
7YNO4_YEAST (P53907) Hypothetical 84.2 kDa protein in MFA2-MEP2 i... 27 8.8
8CCL11_HORSE (Q9TTQ4) Eotaxin precursor (Small inducible cytokine... 27 8.8
9IF2_STRT2 (Q5M5V5) Translation initiation factor IF-2 27 8.8
10IF2_STRT1 (Q5M1B9) Translation initiation factor IF-2 27 8.8
11KLOTB_HUMAN (Q86Z14) Beta klotho (BetaKlotho) (Klotho beta-like ... 27 8.8

>VG12_SHV21 (P24915) Hypothetical gene 12 protein|
          Length = 169

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 361 ILFVVCFRYSACSLCSCMK*WTTMYYWDSPLLVDEKYHSFY 239
           I+  VC     C LC  +    T+  W S +L  E Y++FY
Sbjct: 76  IVLCVCVSTLLCILCILLDICLTIRLWQSSVLCYEVYNTFY 116



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>NIN_HUMAN (Q8N4C6) Ninein (hNinein)|
          Length = 2090

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 297  VHHFIHEHKEQAEYLKQTTNKIEVMKAPKL 386
            VHH I E K++ +YL+  T  +E +KA ++
Sbjct: 1380 VHHVIEECKQENQYLEGNTQLLEKVKAHEI 1409



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>YWV1_CAEEL (Q11075) Hypothetical protein B0403.1|
          Length = 198

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 409 FSKHVFYVSFGAFITSILFVVCFRYSACSL 320
           F KH+ YVS  AF+     + CFR++  SL
Sbjct: 23  FQKHIEYVSNSAFLKCRQLLRCFRFTNVSL 52



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>Y098_NPVOP (O10343) Hypothetical 36.0 kDa protein (ORF99)|
          Length = 313

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 376 AFITSILFVVCFRYSACSLCSCMK*WTTMYYWDSPLL 266
           AF T +L  VC      ++ +C+K W T++ +  PLL
Sbjct: 83  AFKTPVLGHVCVLQHKPAMYACLKEWYTLFEFQVPLL 119



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>CID16_SCHPO (O13798) Caffeine-induced protein 16|
          Length = 1202

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 286  YWDSPLLVDEKYHSFYCVT*WCNIYHFY 203
            YW S  L+D+ +H+F     WC +  FY
Sbjct: 1026 YWASNRLIDKTHHAFPSSYTWCIMVIFY 1053



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>RNFC_BUCAI (P57215) Electron transport complex protein rnfC|
          Length = 473

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +2

Query: 53  IDSASKNSLKIKLVNNFKNLVIQKK*PKGKLNTEVETLTGSG*EKYTAHSIEM 211
           I S SK    IK  + FK  +I+KK P G     V++LTG     +  HSI++
Sbjct: 178 IQSISKIQHLIKNKSLFKICIIKKKYPAGSSKVLVKSLTGKE-VPHGKHSIDI 229



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>YNO4_YEAST (P53907) Hypothetical 84.2 kDa protein in MFA2-MEP2 intergenic|
           region
          Length = 740

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
 Frame = +2

Query: 8   ELCRLLTFYLTNPSQIDSASKNSLKIKLVNNFKNLVIQKK*PKGKLNTEVETLTGSG*EK 187
           + C L T  L N  + DS+S+ +          N+ I +K    +LN+  E +  +G   
Sbjct: 418 DFCGLFTSKLRNFFKTDSSSRKN---------SNMDIGQKMRSKELNSVQEEIDDNGSTT 468

Query: 188 YTAHSIEMINITPLGHAIKRMIFFIHQKW-------GIPVIHCSPS------FHTRAQRT 328
            T  S+     +P  H++      IH+ +        I  + C  S      F    + T
Sbjct: 469 NTNTSVLSSTFSPTAHSVLTAQTSIHENFRSRSNSNPIDPLRCDRSVLKINNFEPVYEGT 528

Query: 329 SRVSKTNN--------KQNRGNE 373
            R + +N+        K NRGNE
Sbjct: 529 GRSTISNSAERTNREEKLNRGNE 551



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>CCL11_HORSE (Q9TTQ4) Eotaxin precursor (Small inducible cytokine A11) (CCL11)|
          Length = 100

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 136 RQAKY*SRDPNRKWVREIYSSLDRNDK 216
           +QAK    DP +KWV++    LD N +
Sbjct: 67  KQAKKICADPKQKWVQDAMKYLDENSR 93



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>IF2_STRT2 (Q5M5V5) Translation initiation factor IF-2|
          Length = 943

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 314 RAQRTSRVSKTNNKQ---NRGNESPKANIENMF 403
           R QR S  +K  NK+   NRGN +PK   E  F
Sbjct: 323 RNQRNSNWNKNKNKKGKNNRGNSAPKPVTERKF 355



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>IF2_STRT1 (Q5M1B9) Translation initiation factor IF-2|
          Length = 943

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 314 RAQRTSRVSKTNNKQ---NRGNESPKANIENMF 403
           R QR S  +K  NK+   NRGN +PK   E  F
Sbjct: 323 RNQRNSNWNKNKNKKGKNNRGNSAPKPVTERKF 355



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>KLOTB_HUMAN (Q86Z14) Beta klotho (BetaKlotho) (Klotho beta-like protein)|
          Length = 1044

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 295 TMYYWDSPLLVDEKY 251
           T+Y+WD PL + EKY
Sbjct: 192 TLYHWDLPLALQEKY 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,380,278
Number of Sequences: 219361
Number of extensions: 943673
Number of successful extensions: 2474
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2474
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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