ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02d08 |
|---|---|
| Clone Library Name | barley_pub |
>PNCB_RHIME (Q92S49) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 434 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -3 Query: 213 FILEELTWKGCKHALDDAYIFGPNFVAWLTESILPKPEL 97 F +E+ W IF P F+AWL LP+ EL Sbjct: 81 FTKKEMIWLAGNSFYGRTQIFSPEFLAWLARFRLPEYEL 119
>PNCB_RHILO (Q98D24) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 434 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -3 Query: 213 FILEELTWKGCKHALDDAYIFGPNFVAWLTESILPKPEL 97 F +E+ W G + IF P F+AWL LP EL Sbjct: 81 FSKKEMIWLGGNNFYGRKQIFEPEFLAWLEGFRLPDYEL 119
>GLGB_SALTY (Q8ZLG5) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 728 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%) Frame = -3 Query: 198 LTWKGCKHALDDAYIFGP---NFVAWLTES---ILPKPELGFH 88 +TW G ++ +DD Y FGP AWL + P LG H Sbjct: 86 VTWHGQQNLIDDPYRFGPLIQEMDAWLLSEGTHLRPYETLGAH 128
>GLGB_SALTI (Q8Z235) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 728 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%) Frame = -3 Query: 198 LTWKGCKHALDDAYIFGP---NFVAWLTES---ILPKPELGFH 88 +TW G ++ +DD Y FGP AWL + P LG H Sbjct: 86 VTWHGQQNLIDDPYRFGPLIQEMDAWLLSEGTHLRPYETLGAH 128
>GLGB_SALPA (Q5PM06) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 728 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%) Frame = -3 Query: 198 LTWKGCKHALDDAYIFGP---NFVAWLTES---ILPKPELGFH 88 +TW G ++ +DD Y FGP AWL + P LG H Sbjct: 86 VTWHGQQNLIDDPYRFGPLMQEMDAWLLSEGTHLRPYETLGAH 128
>FREM2_LYTVA (Q9GV77) Extracellular matrix protein 3 precursor (FREM2 homolog)| Length = 3103 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = +2 Query: 98 SSGLGKMDSVNHATKLGPKMYASSSACLHPFHVSSSKMK-----GPQ 223 SSG+GK ++ +HA + A+S A + P + MK GPQ Sbjct: 2983 SSGIGKRETEHHAISSRQRRQANSEALVDPAQGQGTNMKRVALQGPQ 3029
>PNCB_BRUME (Q8YEP2) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 434 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 Query: 213 FILEELTWKGCKHALDDAYIFGPNFVAWLTESILPKPEL 97 F +E+ W IF P F+AWL + LP+ EL Sbjct: 81 FSKKEMIWLAGNTFYGRKQIFQPEFLAWLHDCQLPEYEL 119
>NEUA_ONCMY (Q90WG6) N-acylneuraminate cytidylyltransferase (EC 2.7.7.43)| (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) Length = 432 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Frame = +2 Query: 29 LSRTSKESAHMYHAQGLRVK*NPSSGLGKMDSVNHATKLGPKM-----YASSSACLHPFH 193 + + +K H + V + SS L D++ +L P++ ++S CLHPFH Sbjct: 84 IEKVAKTWGAQVHRRSPEVSKDSSSSL---DTIQEFARLNPEVDVICHIQATSPCLHPFH 140 Query: 194 VSSS 205 + + Sbjct: 141 LKEA 144
>RS1_CHLTR (O84100) 30S ribosomal protein S1| Length = 569 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = -3 Query: 327 SKRATRQTQATLDERAAHSGSILLGHTLYLDDEGACGPFILEELTWKGCKH 175 SK+A Q T+ ER + ++LD +G G + ++TWK +H Sbjct: 208 SKKAELIEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRH 258
>RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen)| Length = 570 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = -3 Query: 327 SKRATRQTQATLDERAAHSGSILLGHTLYLDDEGACGPFILEELTWKGCKH 175 SK+A Q T+ ER + ++LD +G G + ++TWK +H Sbjct: 208 SKKAELIEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRH 258
>PNCB_BRUSU (Q8G340) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 434 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 Query: 213 FILEELTWKGCKHALDDAYIFGPNFVAWLTESILPKPEL 97 F +E+ W IF P F+AWL + LP+ EL Sbjct: 81 FSKKEMIWLAGNTFYGRKQIFQPEFLAWLHDFQLPEYEL 119
>END4_CHLMU (Q9PJB8) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 288 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = -3 Query: 333 WRSKRATR----QTQATLDERAAHSGSILLGHTLYLDDEGACGPFILEE 199 W+ + T+ Q Q LDE + S ++ H YL++ GA P ILE+ Sbjct: 47 WKRRSLTQNMIEQFQTALDETSL---SYIMSHAGYLNNPGAPNPEILEK 92
>Y1104_HAEIN (P71369) Hypothetical metabolite transport protein HI1104| Length = 407 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = -3 Query: 285 RAAHSGSILLGHTLYLDDEGACGPFILEELTWKGCKHALDDAYIFG--PNFVAWLTESIL 112 RA + + LG + + P +L + W+G ++ G P FVAW S L Sbjct: 133 RAKAASYVALGWQVGVLGAALLTPLLLPHIGWRGM-------FLVGIFPAFVAWFLRSHL 185 Query: 111 PKPEL 97 +PE+ Sbjct: 186 HEPEI 190
>NAC94_ARATH (Q9FIW5) Putative NAC domain-containing protein 94 (ANAC094)| Length = 337 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -1 Query: 188 KGVNMHWMMHTFLGLILLRG*QNPSYPNLN 99 KGV WMMH F L L + SYPN N Sbjct: 134 KGVKTDWMMHEF-RLPSLSDSHHSSYPNYN 162 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,156,859 Number of Sequences: 219361 Number of extensions: 1071553 Number of successful extensions: 2115 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2097 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2115 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
