Clone Name | rbastl02d08 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_204546.2| Gallus gallus RAD52 motif 1 (RDM1), mRNA Length = 1411 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 139 aaaattaggcccaaaaatgtatgc 162 |||||||||||||||||||||||| Sbjct: 998 aaaattaggcccaaaaatgtatgc 1021
>dbj|AB248100.1| Gallus gallus RDM1 gene for RAD52 motif 1, complete cds Length = 5599 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 139 aaaattaggcccaaaaatgtatgc 162 |||||||||||||||||||||||| Sbjct: 4408 aaaattaggcccaaaaatgtatgc 4431
>dbj|AB080727.1| Gallus gallus mRNA for RDM1, complete cds Length = 1433 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 139 aaaattaggcccaaaaatgtatgc 162 |||||||||||||||||||||||| Sbjct: 998 aaaattaggcccaaaaatgtatgc 1021
>gb|AC098576.7| Drosophila melanogaster X BAC RP98-3E12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175262 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 gcatcatccagtgcatgttta 181 ||||||||||||||||||||| Sbjct: 80134 gcatcatccagtgcatgttta 80114
>gb|AC093657.4| Homo sapiens BAC clone RP11-447B21 from 4, complete sequence Length = 162689 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 3 atctttttctccagtataaataagcttta 31 |||||||||| |||||||||||| ||||| Sbjct: 1853 atctttttctgcagtataaataaacttta 1881
>gb|AC093744.2| Homo sapiens BAC clone RP11-25B14 from 4, complete sequence Length = 188914 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 3 atctttttctccagtataaataagcttta 31 |||||||||| |||||||||||| ||||| Sbjct: 188767 atctttttctgcagtataaataaacttta 188795
>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete sequence Length = 304204 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 gcatcatccagtgcatgttta 181 ||||||||||||||||||||| Sbjct: 287937 gcatcatccagtgcatgttta 287917
>emb|AL030994.1|DMC4F1 Drosophila melanogaster cosmid clone 4F1 Length = 44352 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 gcatcatccagtgcatgttta 181 ||||||||||||||||||||| Sbjct: 20473 gcatcatccagtgcatgttta 20453
>gb|AC102376.14| Mus musculus chromosome 18, clone RP23-314H11, complete sequence Length = 190153 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 tgcttgagtctgtcttgtag 317 |||||||||||||||||||| Sbjct: 132601 tgcttgagtctgtcttgtag 132620
>gb|AC125141.4| Mus musculus BAC clone RP24-333C3 from chromosome 17, complete sequence Length = 148447 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tctgtcttgtagccctttta 325 |||||||||||||||||||| Sbjct: 74368 tctgtcttgtagccctttta 74349
>gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosome 16, complete sequence Length = 196646 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 aggactcagggtaaaatgaa 92 |||||||||||||||||||| Sbjct: 122288 aggactcagggtaaaatgaa 122307
>emb|CR407555.9| Zebrafish DNA sequence from clone DKEY-260H8 in linkage group 5, complete sequence Length = 156095 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 catccagtgcatgtttacac 184 |||||||||||||||||||| Sbjct: 1074 catccagtgcatgtttacac 1093
>gb|AC018472.30| Homo sapiens 3 BAC RP11-402L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 101179 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 377 caaactgtgtacccaagttgaaaattac 404 |||| ||||||||| ||||||||||||| Sbjct: 83260 caaaatgtgtaccccagttgaaaattac 83233
>gb|AC093419.2| Homo sapiens chromosome 1 clone RP11-135A15, complete sequence Length = 163209 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ttccatgtcagctcttctaa 207 |||||||||||||||||||| Sbjct: 38608 ttccatgtcagctcttctaa 38589
>gb|AC093561.2| Homo sapiens chromosome 1 clone RP11-401A10, complete sequence Length = 184330 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 ttccatgtcagctcttctaa 207 |||||||||||||||||||| Sbjct: 1288 ttccatgtcagctcttctaa 1307 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,707,592 Number of Sequences: 3902068 Number of extensions: 3707592 Number of successful extensions: 64248 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64228 Number of HSP's gapped (non-prelim): 20 length of query: 404 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 382 effective length of database: 17,147,199,772 effective search space: 6550230312904 effective search space used: 6550230312904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)