ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02d07 |
|---|---|
| Clone Library Name | barley_pub |
>ACOC_CUCMA (P49608) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 35.4 bits (80), Expect = 0.035 Identities = 14/17 (82%), Positives = 17/17 (100%) Frame = -3 Query: 357 LAYYNHGGILPYVIRNM 307 LAY+N+GGILPYVIRN+ Sbjct: 879 LAYFNNGGILPYVIRNL 895
>ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3)| Length = 939 Score = 33.1 bits (74), Expect = 0.17 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -3 Query: 351 YYNHGGILPYVIRNMAGAQK 292 YY HGGIL YV+R MA + K Sbjct: 920 YYRHGGILQYVLRQMAASSK 939
>ACOC_CUCMC (Q42669) Aconitase (EC 4.2.1.3) (Aconitate hydratase) (Citrate| hydro-lyase) (Fragment) Length = 764 Score = 33.1 bits (74), Expect = 0.17 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -3 Query: 357 LAYYNHGGILPYVIRNM 307 LAY++HGGIL YVIRN+ Sbjct: 743 LAYFDHGGILQYVIRNL 759
>ACOC_ARATH (Q42560) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 33.1 bits (74), Expect = 0.17 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -3 Query: 357 LAYYNHGGILPYVIRNM 307 LAY++HGGIL YVIRN+ Sbjct: 879 LAYFDHGGILQYVIRNL 895
>ACOC_SOLTU (O04916) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) (Fragment) Length = 616 Score = 32.7 bits (73), Expect = 0.22 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 357 LAYYNHGGILPYVIRNM 307 LAY+NHGGIL YVIR + Sbjct: 597 LAYFNHGGILQYVIRQL 613
>ACON_CORDI (Q6NH63) Aconitate hydratase (EC 4.2.1.3)| Length = 934 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -3 Query: 351 YYNHGGILPYVIRNMAGA 298 YY +GGIL YV+RNM A Sbjct: 917 YYRNGGILQYVLRNMINA 934
>ACON_COREF (Q8FTA8) Aconitate hydratase (EC 4.2.1.3)| Length = 937 Score = 29.6 bits (65), Expect = 1.9 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -3 Query: 351 YYNHGGILPYVIRNMAGA 298 Y+ HGGIL YV+R MA + Sbjct: 920 YFRHGGILQYVLRQMAAS 937
>ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 961 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 351 YYNHGGILPYVIRNM 307 YY +GGIL YV+RNM Sbjct: 943 YYRNGGILQYVLRNM 957
>GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.1.13)| (NADPH-GOGAT) Length = 2111 Score = 28.5 bits (62), Expect = 4.2 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -1 Query: 308 WQELRNRRTRPHTLFDLDGGMAVLL--VPPWTSRVCSLCCGLMNKPKIKL-AFPCLAWAQ 138 +++ R R FD D A+ + V PWT V C G M+ I + + LA A Sbjct: 906 YEQTRRCTLRGMLDFDFDSSQAIPIEQVEPWTEIVRRFCTGAMSYGSISMESHSSLAIAM 965 Query: 137 VDLGG 123 LGG Sbjct: 966 NRLGG 970
>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47 homolog) (Clathrin coat-associated protein AP47 homolog) (Golgi adaptor AP-1 47 kDa protein homolog) (HA1 47 kDa subunit homolog) (Clathrin assembly protein assembly protein Length = 418 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 275 HTLFDLDGGMAVLLVPPWTSRVCSLCCGLMNKPKIKLAFP 156 H+LF ++GG AV L W S V C + + ++K P Sbjct: 3 HSLFLMNGGGAVFLEKHWRSVVSRSVCAYLLEAQLKAGQP 42
>RGS6_CAEEL (Q18563) Regulator of G-protein signaling rgs-6| Length = 737 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = +1 Query: 103 FHNHNQTPPKSTCAHARHGNASFIFGLFIRPQHNEQTLD 219 F N TP K C ARH S G +RP ++ TLD Sbjct: 336 FKNPASTPTKLVCIRARH---SLSTGAVLRPLLHKYTLD 371
>VL2_HPV31 (P17389) Minor capsid protein L2| Length = 466 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/60 (26%), Positives = 29/60 (48%) Frame = +2 Query: 8 TSSNMFLAQSNVHQALPI*STTTEDLLKMNTCFITTTKLPPSRPAPTPGMEMPALFSVYS 187 TS ++ L+ S++ ST + + M+T ++T + P PG+ PA +YS Sbjct: 172 TSGHLLLSSSSI-------STHNYEEIPMDTFIVSTNNENITSSTPIPGVRRPARLGLYS 224
>ACON1_ECOLI (P25516) Aconitate hydratase 1 (EC 4.2.1.3) (Citrate hydro-lyase 1)| (Aconitase 1) Length = 890 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -3 Query: 357 LAYYNHGGILPYVIRNM 307 L YY + GIL YVIRNM Sbjct: 872 LTYYQNDGILHYVIRNM 888
>IREB1_RAT (Q63270) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -3 Query: 357 LAYYNHGGILPYVIRNMA 304 L Y+++GGIL Y+IR MA Sbjct: 871 LTYFHNGGILNYMIRKMA 888
>IREB1_MOUSE (P28271) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -3 Query: 357 LAYYNHGGILPYVIRNMA 304 L Y+++GGIL Y+IR MA Sbjct: 871 LTYFHNGGILNYMIRKMA 888
>IREB1_CHICK (Q90875) Iron-responsive element binding protein (IRE-BP) (Iron| regulatory protein) (IRP) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -3 Query: 357 LAYYNHGGILPYVIRNMA 304 L Y+++GGIL Y+IR MA Sbjct: 871 LTYFHNGGILNYMIRKMA 888
>ARLY_SULTO (Q970U9) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 446 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +2 Query: 5 ATSSNMFL--AQSNVHQALPI*STTTEDLLKMNTCFITTTKLPPS 133 ATSS + L A SN+ + S EDL+ +++ FI KLP S Sbjct: 217 ATSSRLDLINAVSNLSLLMLFFSRIAEDLILLSSMFINIVKLPDS 261
>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor| Length = 263 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = +2 Query: 68 TTTEDLLKMNTCFITTTKLPPSRPAPTPGMEMP 166 TT T TTT PP+RP P P + P Sbjct: 38 TTVPTCAPTTTTTTTTTCAPPTRPPPPPCTDAP 70
>ACON_BRAJA (P70920) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 906 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -3 Query: 357 LAYYNHGGILPYVIRNMA 304 L YY +GGIL YV+R +A Sbjct: 888 LDYYRNGGILHYVLRKLA 905
>ACON_STAES (Q8CPC2) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -3 Query: 357 LAYYNHGGILPYVIRN 310 L YY HGGIL V+RN Sbjct: 882 LDYYRHGGILQMVLRN 897
>ACON_STAEQ (Q5HPJ0) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -3 Query: 357 LAYYNHGGILPYVIRN 310 L YY HGGIL V+RN Sbjct: 882 LDYYRHGGILQMVLRN 897
>SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,| arginine/serine-rich 2-interacting protein) (SC35-interacting protein 1) (CTD-associated SR protein 11) (Splicing regulatory protein 129) (SRrp129) (NY-REN-40 antigen) Length = 1148 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +2 Query: 38 NVHQALPI*STTTEDLLKMNTCFITTTKLPPSRPAPTPGMEM 163 N+H LP+ T L+++ T + LPP P P P ++ Sbjct: 933 NIHPQLPLHLHTGVPLMQVATPTSVSQGLPPPPPPPPPSQQV 974
>ACON_CORJK (Q4JVM4) Aconitate hydratase (EC 4.2.1.3)| Length = 936 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = -3 Query: 351 YYNHGGILPYVIRNM 307 YY +GGIL +V+RNM Sbjct: 918 YYRNGGILQFVLRNM 932 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,994,229 Number of Sequences: 219361 Number of extensions: 1280422 Number of successful extensions: 3636 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3505 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3631 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
