>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54|
           kDa nuclear protein) (p54)
          Length = 484

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = -2

Query: 374 RTRTFKRPSRSSSQAVGGRSLARRWTRPSRTPKNRRNNKGPQRTVSHRR 228
           R+R+ +R + SSS+    RS +RR  R     ++RR +K P+R  SH R
Sbjct: 252 RSRSRRRRTPSSSRHRRSRSRSRR--RSHSKSRSRRRSKSPRRRRSHSR 298

>KE4_PIG (Q29175) Zinc transporter SLC39A7 (Solute carrier family 39 member|
           7) (Histidine-rich membrane protein Ke4) (Fragments)
          Length = 155

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
 Frame = -3

Query: 376 GGQGHSSDHQGARHKQWEVVPWQDG-----GQGPAERQKIVGTTKDHKERSV-----IAG 227
           GG GHS  H  A   + EV+ W+ G      Q   E +K  G ++  +  S         
Sbjct: 47  GGHGHSHGHGHAHGTRMEVMAWKTGVSSKEKQSSEEEEKEAGASRKRRGGSTRPKDGPVR 106

Query: 226 RDHDHEKKRGRYRINKAVYL 167
             H  E+K+G+  + + + L
Sbjct: 107 PQHSGEEKQGQTCVCQGIIL 126

>CWC22_CANAL (Q59XY0) Pre-mRNA-splicing factor CWC22|
          Length = 648

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = -2

Query: 374 RTRTFKRPSRSSSQAVGGRSLARRWTRPSRTP--------KNRRNNKGPQRTVS 237
           R+R++ R + SSS     RS +R  +R SR+P        K +++N    RT S
Sbjct: 560 RSRSYSRSASSSSYNSRSRSYSRSQSRSSRSPNPRGRQRFKTKKHNHNESRTPS 613

>GOGA2_MOUSE (Q921M4) Golgin subfamily A member 2 (Cis-Golgi matrix protein|
           GM130)
          Length = 888

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 20/74 (27%), Positives = 32/74 (43%)
 Frame = -3

Query: 457 SGGNNQRPH*PEALLEIPPTCATGVHAGGQGHSSDHQGARHKQWEVVPWQDGGQGPAERQ 278
           +GGN Q  H  E   ++    +  + +  Q      Q A + + E   WQ   Q  AE+ 
Sbjct: 248 AGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQV 307

Query: 277 KIVGTTKDHKERSV 236
             +   K+H+ER V
Sbjct: 308 HTLKEEKEHRERQV 321

>TSP3_MOUSE (Q05895) Thrombospondin-3 precursor|
          Length = 956

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 291 GPCPPSCQGTTSHC 332
           GPCPP  QG  +HC
Sbjct: 301 GPCPPGLQGNGTHC 314

>TSP3_HUMAN (P49746) Thrombospondin-3 precursor|
          Length = 956

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 291 GPCPPSCQGTTSHC 332
           GPCPP  QG  +HC
Sbjct: 301 GPCPPGLQGNGTHC 314

>PITM2_HUMAN (Q9BZ72) Membrane-associated phosphatidylinositol transfer protein|
           2 (Phosphatidylinositol transfer protein,
           membrane-associated 2) (Pyk2 N-terminal
           domain-interacting receptor 3) (NIR-3)
          Length = 1349

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 353 PSRSSSQAVGGRSLARRWTRPSRTPKNRRNNKGPQR 246
           PS S+ + + GR L ++W+  S++ ++ +    P R
Sbjct: 287 PSSSNGEPLVGRGLKKQWSTSSKSSRSSKRGASPSR 322


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,422,612
Number of Sequences: 219361
Number of extensions: 1338112
Number of successful extensions: 4016
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4011
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)