Clone Name | rbastl02d05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK067082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096E12, full insert sequence Length = 3335 Score = 133 bits (67), Expect = 6e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 311 ccagggaacgacctcccactgcttgtgacgagctccttgatggtcgcttgaatgtccttg 370 ||||| || ||||||||||| |||||||| || ||||||||||| ||||| |||||||| Sbjct: 3022 ccaggaaatgacctcccactacttgtgacaagttccttgatggttgcttggatgtcctta 2963 Query: 371 tcctccagcatggactccagtggcacatgtaggcggaatctccagtaatgcttcgggtta 430 || |||| || || |||| || ||||||||| ||||||||||| ||||||||||||||| Sbjct: 2962 tcgtccaacagcgaatccaatgtcacatgtagccggaatctccaataatgcttcgggtta 2903 Query: 431 gtggggtcgttgattgtttcctc 453 || ||||| |||||||||||||| Sbjct: 2902 gttgggtcattgattgtttcctc 2880
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 404 cggaatctccagtaatgcttcgggttagtggggtcgttgattgtttcctc 453 ||||||||||| ||||||||||||||||| ||||| |||||||||||||| Sbjct: 27913498 cggaatctccaataatgcttcgggttagttgggtcattgattgtttcctc 27913449 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 311 ccagggaacgacctcccactgcttgtgacgagctccttgatggtcgcttgaatgtccttg 370 ||||| || ||||||||||| |||||||| || ||||||||||| ||||| |||||||| Sbjct: 27914125 ccaggaaatgacctcccactacttgtgacaagttccttgatggttgcttggatgtcctta 27914066 Query: 371 tcctccagcatggactccagtggcacatgtag 402 || |||| || || |||| || ||||||||| Sbjct: 27914065 tcgtccaacagcgaatccaatgtcacatgtag 27914034
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 404 cggaatctccagtaatgcttcgggttagtggggtcgttgattgtttcctc 453 ||||||||||| ||||||||||||||||| ||||| |||||||||||||| Sbjct: 76856 cggaatctccaataatgcttcgggttagttgggtcattgattgtttcctc 76807 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 311 ccagggaacgacctcccactgcttgtgacgagctccttgatggtcgcttgaatgtccttg 370 ||||| || ||||||||||| |||||||| || ||||||||||| ||||| |||||||| Sbjct: 77483 ccaggaaatgacctcccactacttgtgacaagttccttgatggttgcttggatgtcctta 77424 Query: 371 tcctccagcatggactccagtggcacatgtag 402 || |||| || || |||| || ||||||||| Sbjct: 77423 tcgtccaacagcgaatccaatgtcacatgtag 77392
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 404 cggaatctccagtaatgcttcgggttagtggggtcgttgattgtttcctc 453 ||||||||||| ||||||||||||||||| ||||| |||||||||||||| Sbjct: 2832 cggaatctccaataatgcttcgggttagttgggtcattgattgtttcctc 2783 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 311 ccagggaacgacctcccactgcttgtgacgagctccttgatggtcgcttgaatgtccttg 370 ||||| || ||||||||||| |||||||| || ||||||||||| ||||| |||||||| Sbjct: 3459 ccaggaaatgacctcccactacttgtgacaagttccttgatggttgcttggatgtcctta 3400 Query: 371 tcctccagcatggactccagtggcacatgtag 402 || |||| || || |||| || ||||||||| Sbjct: 3399 tcgtccaacagcgaatccaatgtcacatgtag 3368
>gb|AY108559.1| Zea mays PCO061836 mRNA sequence Length = 710 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 404 cggaatctccagtaatgcttcgggttagtggggtcgttgattgtttcctc 453 ||||||||||| || ||||| |||||||||||||| |||||||||||||| Sbjct: 694 cggaatctccaatagtgctttgggttagtggggtcattgattgtttcctc 645
>gb|AC025794.9| Mus musculus chromosome 19, clone RP23-62O7, complete sequence Length = 242418 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 244 gttctttgtggtcctttgttgttcct 269 ||||||||||| |||||||||||||| Sbjct: 105785 gttctttgtggacctttgttgttcct 105810
>gb|AY253318.1| HIV-1 isolate 01TZA306 from Tanzania gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds Length = 8737 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tttctctagctgaaacaaca 145 |||||||||||||||||||| Sbjct: 3127 tttctctagctgaaacaaca 3146
>gb|AC130891.4| Homo sapiens 12 BAC RP11-97F22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 32143 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 ccagtagttattattctcca 86 |||||||||||||||||||| Sbjct: 19111 ccagtagttattattctcca 19130
>emb|AL162742.9| Human DNA sequence from clone RP11-127L20 on chromosome 10 Contains the gene for a novel glutathione-S-transferase gene(LOC119391), a novel gene (KIAA1754), the 5'end of a novel gene (FLJ35908), two novel genes and two CpG islands, complete sequence Length = 178428 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 agcatggactccagtggcac 396 |||||||||||||||||||| Sbjct: 143443 agcatggactccagtggcac 143462
>gb|AC140121.4| Homo sapiens 12 BAC RP13-86N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 39373 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 ccagtagttattattctcca 86 |||||||||||||||||||| Sbjct: 19842 ccagtagttattattctcca 19823
>gb|AY463223.1| HIV-1 isolate C.ZA.J54Ma from South Africa, complete genome Length = 9117 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 118 aaagattttttctctagctgaaacaaca 145 ||||||| |||||||| ||||||||||| Sbjct: 3366 aaagattgtttctctaactgaaacaaca 3393
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 Length = 1824958 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 tcctccagcatggactccag 390 |||||||||||||||||||| Sbjct: 679534 tcctccagcatggactccag 679553
>gb|DQ011177.1| HIV-1 isolate 04ZASK136B1 from South Africa, complete genome Length = 9042 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tttctctagctgaaacaaca 145 |||||||||||||||||||| Sbjct: 3367 tttctctagctgaaacaaca 3386
>gb|DQ011166.1| HIV-1 isolate 04ZASK135B1 from South Africa, complete genome Length = 9073 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tttctctagctgaaacaaca 145 |||||||||||||||||||| Sbjct: 3340 tttctctagctgaaacaaca 3359
>emb|AL773508.6| Mouse DNA sequence from clone RP23-253D15 on chromosome 2, complete sequence Length = 132091 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 tatctccctctcttcttctc 211 |||||||||||||||||||| Sbjct: 44695 tatctccctctcttcttctc 44676
>gb|AY713414.1| HIV-1 isolate 94IN_20635-4 from India gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds Length = 8745 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 118 aaagattttttctctagctgaaacaaca 145 ||||||| |||||||| ||||||||||| Sbjct: 3119 aaagattgtttctctaactgaaacaaca 3146
>gb|AC079436.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-108L19, complete sequence Length = 174622 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 atatctccctctcttcttct 210 |||||||||||||||||||| Sbjct: 72144 atatctccctctcttcttct 72163
>gb|DQ351226.1| HIV-1 isolate 03ZAPS025MB1 from South Africa, complete genome Length = 9081 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 118 aaagattttttctctagctgaaacaaca 145 ||||||| |||||||| ||||||||||| Sbjct: 3352 aaagattgtttctctaactgaaacaaca 3379 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,055,500 Number of Sequences: 3902068 Number of extensions: 4055500 Number of successful extensions: 69749 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69702 Number of HSP's gapped (non-prelim): 47 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)