>PANB_COREF (Q8FUA5) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC|
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
          Length = 269

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = -1

Query: 414 QGPWPLGGSSYRGVGSGCFR*LCVARKRSASGKYSVSTVDIPAHIVYQLGNKIEIMSAAI 235
           Q    LGG   +G GSG  + L  A    A+G ++V    +PA I  ++ N+++I +  I
Sbjct: 149 QSEHALGGPVVQGRGSGADKLLADAHAVQAAGAFAVVLEMVPAEIATEVTNQLDIATIGI 208

>LMNB2_HUMAN (Q03252) Lamin-B2|
          Length = 600

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = -1

Query: 402 PLG-GSSYRGVGSGCFR*LCVARKRSASGKYSVSTVDIPAHIVYQLGNKIEIMSAAILRH 226
           PLG G S  G G+G      +A++ SASG  S+  +D+    V    N  +  S    R 
Sbjct: 424 PLGSGPSVLGTGTGGSGGFHLAQQASASGSVSIEEIDLEGKFVQLKNNSDKDQSLGNWRI 483

Query: 225 PNEA*AA*KL-FEITSRYILSM*EYICKWHA 136
             +     ++ ++ T +YIL   + +  W A
Sbjct: 484 KRQVLEGEEIAYKFTPKYILRAGQMVTVWAA 514

>ISPG_PROMM (Q7V7G9) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 406

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -2

Query: 422 QLIKDHGRWVDPP 384
           QLIKD GRWVDPP
Sbjct: 394 QLIKDDGRWVDPP 406

>VP19_HHV6U (P52348) Capsid assembly and DNA maturation protein (Minor capsid|
           protein)
          Length = 299

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 116 VKPPWFSACHLQMYSYMLKIYRDVISKSFYAAYASL 223
           ++P W    H   Y Y++ +Y++V++K  Y  Y  L
Sbjct: 181 LEPDWEPRQHSTQYVYVVHVYKEVLAKLQYGIYVVL 216

>S6A13_HUMAN (Q9NSD5) Sodium- and chloride-dependent GABA transporter 2|
          Length = 569

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 225 DVAESQPTLFLFYFPTDIQYVLGCPLWIHCIFR*LIVYGL 344
           +VAES P L    +P  +  +   PLW  C F  +++ GL
Sbjct: 321 EVAESGPGLAFIAYPRAVVMLPFSPLWACCFFFMVVLLGL 360

>S6A13_RAT (P31646) Sodium- and chloride-dependent GABA transporter 2|
          Length = 602

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 225 DVAESQPTLFLFYFPTDIQYVLGCPLWIHCIFR*LIVYGL 344
           +VAES P L    +P  +  +   PLW  C F  +++ GL
Sbjct: 349 EVAESGPGLAFIAYPRAVVMLPFSPLWACCFFFMVVLLGL 388

>S6A13_MOUSE (P31649) Sodium- and chloride-dependent GABA transporter 3 (GAT3)|
          Length = 602

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 225 DVAESQPTLFLFYFPTDIQYVLGCPLWIHCIFR*LIVYGL 344
           +VAES P L    +P  +  +   PLW  C F  +++ GL
Sbjct: 349 EVAESGPGLAFIAYPRAVVMLPFSPLWACCFFFMVVLLGL 388

>MNTH_LACBR (Q93V04) Manganese transport protein mntH (Hop-inducible cation|
           transporter)
          Length = 464

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 270 TDIQYVLGCPLWIHCIFR*LIVYGLHITTGNILSLLL 380
           TD+  ++G  + I  +F   +V G+ ITT ++L LLL
Sbjct: 139 TDVAEIIGSGIAIKLLFNIPLVVGILITTADVLILLL 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,789,945
Number of Sequences: 219361
Number of extensions: 1302843
Number of successful extensions: 2794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2794
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)