>gb|AY562488.1| Zea mays hydroxymethylbutenyl 4-diphosphate synthase (Hds1) gene,
            complete cds
          Length = 6353

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                
Query: 371  cctactcctcggtaggaggatccacccaacggccatggtccttgattagctg 422
            |||||||||||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct: 6192 cctactcctcggcaggaggatccacccatcggccatggtccttgatcagctg 6141

>gb|AY562489.1| Zea mays hydroxymethylbutenyl 4-diphosphate synthase (Hds1) mRNA,
            complete cds
          Length = 2631

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                
Query: 371  cctactcctcggtaggaggatccacccaacggccatggtccttgattagctg 422
            |||||||||||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct: 2443 cctactcctcggcaggaggatccacccatcggccatggtccttgatcagctg 2392

>ref|XM_466605.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2494

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                  
Query: 370  gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctga 423
            |||||||||||   ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2398 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactga 2345

>ref|XM_506856.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1669_F01.30 mRNA
          Length = 2675

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                  
Query: 370  gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctga 423
            |||||||||||   ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2391 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactga 2338

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                      
Query: 370      gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctga 423
                |||||||||||   ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 23672982 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactga 23673035

>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1669_F01
          Length = 140019

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                    
Query: 370    gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctga 423
              |||||||||||   ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 114082 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactga 114135

>dbj|AK120769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008D09, full
            insert sequence
          Length = 2675

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                  
Query: 370  gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctga 423
            |||||||||||   ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2391 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactga 2338

>dbj|AK105762.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D08, full
            insert sequence
          Length = 2494

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                  
Query: 370  gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctga 423
            |||||||||||   ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2398 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactga 2345

>gb|AY224457.1| Oryza sativa (japonica cultivar-group) isolate 23493 isoprenoid
            biosynthesis-like protein mRNA, partial cds
          Length = 1827

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                    
Query: 384  aggaggatccacccaacggccatggtccttgattagctga 423
            ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1815 aggaggatccacccaacggccatggtccttgattaactga 1776

>gb|BT014629.1| Lycopersicon esculentum clone 134132R, mRNA sequence
          Length = 2527

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 373  tactcctcggtaggaggatccacccaacggccatggtccttgattagctg 422
            |||||||||||||||||||| ||||| ||| |||| || |||||||||||
Sbjct: 2271 tactcctcggtaggaggatcaacccagcggtcatgatctttgattagctg 2222

>gb|AF435086.1| Lycopersicon esculentum GcpE mRNA, complete cds
          Length = 2373

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 373  tactcctcggtaggaggatccacccaacggccatggtccttgattagctg 422
            |||||||||||||||||||| ||||| ||| |||| || |||||||||||
Sbjct: 2293 tactcctcggtaggaggatcaacccagcggtcatgatctttgattagctg 2244

>emb|AL109618.1|HSJ775C13 Human DNA sequence from clone RP4-775C13 on chromosome 20p12.1-13
             Contains an NS1-associated protein 1 (NSAP1) pseudogene,
             complete sequence
          Length = 103819

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 117   ttaaaccaccatggttttctgc 138
             ||||||||||||||||||||||
Sbjct: 83824 ttaaaccaccatggttttctgc 83803

>ref|NM_001026389.1| Caenorhabditis elegans PaTched Related family member (ptr-12)
            (ptr-12) mRNA, complete cds
          Length = 2242

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 281  atatgtgctgggatgtccactg 302
            ||||||||||||||||||||||
Sbjct: 1947 atatgtgctgggatgtccactg 1926

>ref|NM_001026388.1| Caenorhabditis elegans PaTched Related family member (ptr-12)
            (ptr-12) mRNA, complete cds
          Length = 3032

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 281  atatgtgctgggatgtccactg 302
            ||||||||||||||||||||||
Sbjct: 2582 atatgtgctgggatgtccactg 2561

>gb|AC006670.1| Caenorhabditis elegans cosmid K07A3, complete sequence
          Length = 36454

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 281   atatgtgctgggatgtccactg 302
             ||||||||||||||||||||||
Sbjct: 12796 atatgtgctgggatgtccactg 12817

>emb|AL137128.4|CNS01DWD Human chromosome 14 DNA sequence BAC R-951P22 of library RPCI-11
           from chromosome 14 of Homo sapiens (Human), complete
           sequence
          Length = 228652

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 100 tctaattctagatacagttaa 120
           |||||||||||||||||||||
Sbjct: 866 tctaattctagatacagttaa 846

>emb|AL163011.3|CNS01RI8 Human chromosome 14 DNA sequence BAC C-2324M15 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 100791

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   tctaattctagatacagttaa 120
             |||||||||||||||||||||
Sbjct: 20203 tctaattctagatacagttaa 20223

>gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, complete sequence
          Length = 163721

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   aaccaccatggttttctgca 139
             ||||||||||||||||||||
Sbjct: 88305 aaccaccatggttttctgca 88286

>gb|AC123678.19| Mus musculus chromosome 3, clone RP23-276A22, complete sequence
          Length = 198615

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   tctattttatttcccaactg 273
             ||||||||||||||||||||
Sbjct: 83113 tctattttatttcccaactg 83094

>ref|XM_925141.2| PREDICTED: Mus musculus Rab6 interacting protein 2, transcript
            variant 5 (Rab6ip2), mRNA
          Length = 2678

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 8    aactctgtttctactttctt 27
            ||||||||||||||||||||
Sbjct: 2415 aactctgtttctactttctt 2434

>emb|CR788303.14| Zebrafish DNA sequence from clone DKEY-178E17 in linkage group 8,
              complete sequence
          Length = 175313

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 255    ctattttatttcccaactgatatacaatatgtgctg 290
              ||||||||||| ||||| | |||||| |||||||||
Sbjct: 108574 ctattttattttccaacagttatacattatgtgctg 108539

>gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, complete sequence
          Length = 189032

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    gacattatttctattttatt 264
              ||||||||||||||||||||
Sbjct: 120723 gacattatttctattttatt 120742

>gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, complete sequence
          Length = 199240

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   aaccaccatggttttctgca 139
             ||||||||||||||||||||
Sbjct: 25326 aaccaccatggttttctgca 25345

>gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, complete sequence
          Length = 215356

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    aaccaccatggttttctgca 139
              ||||||||||||||||||||
Sbjct: 105742 aaccaccatggttttctgca 105723

>gb|AC117667.9| Mus musculus chromosome 6, clone RP23-367C6, complete sequence
          Length = 134538

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      aactctgtttctactttctt 27
              ||||||||||||||||||||
Sbjct: 126752 aactctgtttctactttctt 126771

>emb|AL450104.14| Human DNA sequence from clone RP11-93N17 on chromosome 1 Contains the
             5' end of a novel gene (KIAA1078) and the 3' end of
             ribosomal protein L34 pseudogene 1 (RPL34P1) and a CpG
             island, complete sequence
          Length = 154879

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 247   cattatttctattttatttcccaa 270
             ||||||| ||||||||||||||||
Sbjct: 43723 cattattgctattttatttcccaa 43746

>gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, complete sequence
          Length = 170363

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     tgggttgggatgtcctttgt 66
              ||||||||||||||||||||
Sbjct: 115031 tgggttgggatgtcctttgt 115012

>dbj|AK134383.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030452A18 product:Rab6
            interacting protein 2, full insert sequence
          Length = 2477

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 8    aactctgtttctactttctt 27
            ||||||||||||||||||||
Sbjct: 2214 aactctgtttctactttctt 2233

>gb|AC074031.16| Homo sapiens 12 BAC RP11-272K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163912

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   acattatttctattttattt 265
             ||||||||||||||||||||
Sbjct: 39771 acattatttctattttattt 39752

>gb|AC106783.3| Homo sapiens chromosome 16 clone RP11-347K10, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   gacattatttctattttatt 264
             ||||||||||||||||||||
Sbjct: 10190 gacattatttctattttatt 10209

>gb|AC107863.9| Mus musculus chromosome 3, clone RP23-383E14, complete sequence
          Length = 194268

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 254  tctattttatttcccaactg 273
            ||||||||||||||||||||
Sbjct: 7377 tctattttatttcccaactg 7358

>gb|AC167140.1| Mus musculus BAC clone RP24-482O17 from chromosome 14, complete
             sequence
          Length = 143541

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   acattatttctattttattt 265
             ||||||||||||||||||||
Sbjct: 80609 acattatttctattttattt 80590

>gb|AF068060.1|AF068060 Cytophaga sp. 'Jeang 1995' S-layer protein precursor, gene, complete
            cds
          Length = 4889

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 109  agatacagttaaaccaccat 128
            ||||||||||||||||||||
Sbjct: 1798 agatacagttaaaccaccat 1779

>dbj|AP001982.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-344F5, complete
            sequence
          Length = 137996

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  tgcatgccatttacaaatgt 155
            ||||||||||||||||||||
Sbjct: 6593 tgcatgccatttacaaatgt 6612

>dbj|AP001977.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-248G21, complete
              sequences
          Length = 156957

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    tgcatgccatttacaaatgt 155
              ||||||||||||||||||||
Sbjct: 155647 tgcatgccatttacaaatgt 155666

>gb|AC125102.4| Mus musculus BAC clone RP24-208N22 from 6, complete sequence
          Length = 163235

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      aactctgtttctactttctt 27
              ||||||||||||||||||||
Sbjct: 120802 aactctgtttctactttctt 120783

>emb|AL662932.10| Mouse DNA sequence from clone RP23-15B7 on chromosome X, complete
              sequence
          Length = 218740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    ttatttctattttatttccc 268
              ||||||||||||||||||||
Sbjct: 203278 ttatttctattttatttccc 203259

>gb|AC136500.1| Homo sapiens chromosome 5 clone RP11-56P2, complete sequence
          Length = 183967

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     tgggttgggatgtcctttgt 66
              ||||||||||||||||||||
Sbjct: 105202 tgggttgggatgtcctttgt 105183


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,041,140
Number of Sequences: 3902068
Number of extensions: 4041140
Number of successful extensions: 88153
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88067
Number of HSP's gapped (non-prelim): 86
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)