ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02d01 |
|---|---|
| Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 97.8 bits (242), Expect = 7e-21 Identities = 47/52 (90%), Positives = 47/52 (90%), Gaps = 5/52 (9%) Frame = -1 Query: 236 DEWNNDPDRKNRHGAGMVPYVLLRPS-----DGDPTDEKMVMEMGIPNSISI 96 DEWNNDPDRKNRHGAGMVPYVLLRPS DGDPTDEKMVMEMGIPNSISI Sbjct: 885 DEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 79.0 bits (193), Expect = 3e-15 Identities = 35/47 (74%), Positives = 40/47 (85%) Frame = -1 Query: 236 DEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 +EWN D R+NRHGAG+VPYVLLRP +G+P D K VMEMGIPNSISI Sbjct: 886 EEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 46.2 bits (108), Expect = 2e-05 Identities = 26/47 (55%), Positives = 30/47 (63%) Frame = -1 Query: 236 DEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 D NN+P+ KNR GAG+VPY LL+ P E V GIPNSISI Sbjct: 855 DMRNNNPENKNRCGAGIVPYELLK-----PFSEPGVTGRGIPNSISI 896
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 41.6 bits (96), Expect = 6e-04 Identities = 20/44 (45%), Positives = 28/44 (63%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 N DP R+NR GAG++PY L+ PS G + G+PNS++I Sbjct: 861 NADPSRRNRCGAGVLPYELMAPSSGPG-----ITCRGVPNSVTI 899
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 41.2 bits (95), Expect = 7e-04 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 2/48 (4%) Frame = -1 Query: 233 EWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEK--MVMEMGIPNSISI 96 + N + KNR+G +PY+LL P+ D T EK + MGIPNSISI Sbjct: 830 DMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 96 N+DP+ KNR+G PY+LL P+ D + GIPNSISI Sbjct: 818 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 40.0 bits (92), Expect = 0.002 Identities = 23/45 (51%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGD-PTDEKMVMEMGIPNSISI 96 N DP RKNR G PY LL P+ D D + GIPNSISI Sbjct: 826 NKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 38.5 bits (88), Expect = 0.005 Identities = 24/47 (51%), Positives = 28/47 (59%) Frame = -1 Query: 236 DEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 DE N + KNR GAG+V Y LL+ PT E V MG+P SISI Sbjct: 855 DERNVNITLKNRAGAGVVKYELLK-----PTSEHGVTGMGVPYSISI 896
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 38.5 bits (88), Expect = 0.005 Identities = 23/44 (52%), Positives = 26/44 (59%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 N D RKNR GAG++PY LL PS V G+PNSISI Sbjct: 880 NADHGRKNRCGAGVLPYELLAPS-----SPPGVTCRGVPNSISI 918
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 38.1 bits (87), Expect = 0.006 Identities = 22/47 (46%), Positives = 27/47 (57%) Frame = -1 Query: 236 DEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 D N D KNR GAG++PY L++ P + V MGIPNS SI Sbjct: 883 DGRNKDRKLKNRCGAGILPYQLMK-----PFSDSGVTGMGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 38.1 bits (87), Expect = 0.006 Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = -1 Query: 236 DEWNNDPDRKNRHGAGMVPYVLLRP-SDGDPTDEKMVMEMGIPNSISI 96 D N D KNR GAG++PY L++P SD T MGIPNS SI Sbjct: 900 DGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTG------MGIPNSTSI 941
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 38.1 bits (87), Expect = 0.006 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 96 N D KNR+G PY+LL P+ D T + GIPNSISI Sbjct: 822 NGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 37.4 bits (85), Expect = 0.010 Identities = 21/44 (47%), Positives = 26/44 (59%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 NND +NRHG +PY LL PS ++ + GIPNSISI Sbjct: 823 NNDEKLRNRHGPVEMPYTLLYPS-----SKEGLTFRGIPNSISI 861
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 37.4 bits (85), Expect = 0.010 Identities = 23/47 (48%), Positives = 26/47 (55%) Frame = -1 Query: 236 DEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 DE N+D KNR G +PY LL PS E V GIPNS+SI Sbjct: 818 DERNDDETLKNRTGLVKMPYTLLFPS-----SEGGVTGRGIPNSVSI 859
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 37.0 bits (84), Expect = 0.014 Identities = 21/44 (47%), Positives = 26/44 (59%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 NND +NR+G +PY LL PS E+ + GIPNSISI Sbjct: 828 NNDESLRNRYGPVKMPYTLLYPS-----SEEGLTCRGIPNSISI 866
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 36.6 bits (83), Expect = 0.018 Identities = 21/46 (45%), Positives = 26/46 (56%) Frame = -1 Query: 233 EWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 E N D +NR+G +PY LL PS E+ + GIPNSISI Sbjct: 813 EKNKDETLRNRYGPAKMPYTLLYPS-----SEEGLTFRGIPNSISI 853
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 34.7 bits (78), Expect = 0.068 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTD-EKMVMEMGIPNSISI 96 N DP KNR G PY L+ P+ D + + GIPNSISI Sbjct: 819 NKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 34.7 bits (78), Expect = 0.068 Identities = 21/46 (45%), Positives = 26/46 (56%) Frame = -1 Query: 233 EWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 E NND +NR G +PY LL PS ++ + GIPNSISI Sbjct: 817 ERNNDEKLRNRCGPVQMPYTLLLPS-----SKEGLTFRGIPNSISI 857
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 34.7 bits (78), Expect = 0.068 Identities = 20/44 (45%), Positives = 25/44 (56%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 N+DP +NR G +PY LL S E+ + GIPNSISI Sbjct: 826 NSDPSLRNRTGPVQLPYTLLHRS-----SEEGLTFKGIPNSISI 864
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 34.7 bits (78), Expect = 0.068 Identities = 20/44 (45%), Positives = 25/44 (56%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 NNDP +R G +PY LL PS ++ + GIPNSISI Sbjct: 826 NNDPSLYHRVGPVQLPYTLLHPS-----SKEGLTFRGIPNSISI 864
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 33.9 bits (76), Expect = 0.12 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = -1 Query: 227 NNDPDRK-NRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 NNDP + NR G +PY LL PS E+ + GIPNSISI Sbjct: 800 NNDPSLQGNRLGPVQLPYTLLYPSS-----EEGLTFRGIPNSISI 839
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 33.1 bits (74), Expect = 0.20 Identities = 20/44 (45%), Positives = 22/44 (50%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 NND NR G +PY LL P+ T GIPNSISI Sbjct: 828 NNDQSLSNRLGPVQLPYTLLHPNSEGLTCR------GIPNSISI 865
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 33.1 bits (74), Expect = 0.20 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 N+ KNR G VPY LL P T E+ + GIPNS+SI Sbjct: 821 NSHKSWKNRSGPVNVPYTLLFP-----TSEEGLTGKGIPNSVSI 859
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 32.0 bits (71), Expect = 0.44 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 N D +NR+G +PY +L P+ +++ + GIPNSISI Sbjct: 823 NKDSSLRNRNGPVKMPYTVLLPT----CEDEGLTFRGIPNSISI 862
>COT2_RAT (O09018) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| (Apolipoprotein AI regulatory protein 1) (ARP-1) (Ovalbumin upstream promoter beta nuclear receptor) (COUPb) Length = 414 Score = 30.8 bits (68), Expect = 0.98 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -3 Query: 213 PEKPTRRRHGAVCAAQAVGR*SHGRENGDGNGHPQQHLHLSCLVCG 76 P+ P + + A A G S G G G+ QQ H+ C+VCG Sbjct: 40 PQTPGQGGPASTPAQTAAG--SQGGPGGPGSDKQQQQQHIECVVCG 83
>UREE_RHOS4 (Q3J156) Urease accessory protein ureE| Length = 182 Score = 30.8 bits (68), Expect = 0.98 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -3 Query: 219 PRPEKPTRRRHGAVCAAQAVGR*SHGRENGDGNGHPQQHLHLS 91 PR E P R GA + +G HG G G+ HP H+H+S Sbjct: 128 PRTE-PFRPEGGAYGHGRTLGH-DHGPAQGHGHDHPHVHVHIS 168
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 29.3 bits (64), Expect = 2.8 Identities = 19/44 (43%), Positives = 21/44 (47%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 96 N D NR G PY LL P T E + GIPNS+SI Sbjct: 823 NGDNILTNRSGPVNAPYTLLFP-----TSEGGLTGKGIPNSVSI 861
>COT2_MOUSE (P43135) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| (Apolipoprotein AI regulatory protein 1) (ARP-1) Length = 414 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -3 Query: 213 PEKPTRRRHGAVCAAQAVGR*SHGRENGDGNGHPQQHLHLSCLVCG 76 P+ P + + A A G G G G+ QQ H+ C+VCG Sbjct: 40 PQTPGQGGPASTPAQTAAG--GQGGPGGPGSDKQQQQQHIECVVCG 83
>COT2_HUMAN (P24468) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| (Apolipoprotein AI regulatory protein 1) (ARP-1) Length = 414 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -3 Query: 213 PEKPTRRRHGAVCAAQAVGR*SHGRENGDGNGHPQQHLHLSCLVCG 76 P+ P + + A A G G G G+ QQ H+ C+VCG Sbjct: 40 PQTPGQGGPASTPAQTAAG--GQGGPGGPGSDKQQQQQHIECVVCG 83
>COT2_BOVIN (Q9TTR7) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| Length = 414 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -3 Query: 213 PEKPTRRRHGAVCAAQAVGR*SHGRENGDGNGHPQQHLHLSCLVCG 76 P+ P + + A A G G G G+ QQ H+ C+VCG Sbjct: 40 PQTPGQGGPASTPAQTAAG--GQGGPGGPGSDKQQQQQHIECVVCG 83
>Y463_CHRVO (Q7P0V2) UPF0341 protein CV_0463| Length = 258 Score = 29.3 bits (64), Expect = 2.8 Identities = 16/35 (45%), Positives = 17/35 (48%) Frame = -3 Query: 216 RPEKPTRRRHGAVCAAQAVGR*SHGRENGDGNGHP 112 R E T +HGAV A G H RE G G G P Sbjct: 45 RLELLTTGKHGAVYAEFVEGAARHRREQGGGRGQP 79
>ASPA_PROMM (Q7V5L6) Probable aspartoacylase (EC 3.5.1.15)| Length = 304 Score = 28.5 bits (62), Expect = 4.9 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -1 Query: 236 DEWNNDPDRKNRHGAGMVPYV 174 D+W+ P+ N HG G+VP + Sbjct: 24 DQWSQTPELINTHGVGVVPVI 44
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 28.1 bits (61), Expect = 6.3 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -1 Query: 227 NNDPDRKNRHGAGMVPYVLLRPS 159 NND +NR G +PY LL PS Sbjct: 709 NNDETLRNRTGPAKMPYTLLYPS 731 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,116,072 Number of Sequences: 219361 Number of extensions: 784716 Number of successful extensions: 1955 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 1824 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1931 length of database: 80,573,946 effective HSP length: 54 effective length of database: 68,728,452 effective search space used: 1649482848 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
