ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473207.1| Oryza sativa (japonica cultivar-group), predic... 100 7e-18
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
3dbj|AK121271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
4dbj|AK071665.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
5emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4,... 100 7e-18
6emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4,... 100 7e-18
7gb|AY111312.1| Zea mays CL3400_1 mRNA sequence 56 1e-04
8gb|AC155246.1| Mus musculus BAC clone RP24-303C15 from 14, compl... 44 0.37
9ref|NM_125465.2| Arabidopsis thaliana unknown protein AT5G60720 ... 40 5.8
10gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.8
11emb|AL445218.12| Human DNA sequence from clone RP11-14O19 on chr... 40 5.8
12emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segmen... 40 5.8
13gb|AY056811.1| Arabidopsis thaliana AT5g60720/mup24_130 mRNA, co... 40 5.8
14gb|DQ080948.1| Uncultured Bacteroidetes bacterium isolate DGGE b... 40 5.8
15dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.8 
>ref|XM_473207.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2607

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 116/138 (84%)
 Strand = Plus / Minus

                                                                        
Query: 294  ctaaatattgactggaagagcggtcaggaacgccagcgtgtaaggagatgtcgacttgcc 353
            |||||||||||| ||||||||||||| ||| ||||  || |||||||| || ||||||||
Sbjct: 2607 ctaaatattgacaggaagagcggtcaagaaagccaatgtataaggagaagtagacttgcc 2548

                                                                        
Query: 354  gaagggcgcacaccagcgtggaagcttctcgagaaccgtctcgaccatcggcgtgaccct 413
             ||||| |||||||| | ||||||||||||||||||| |  | ||| |||| || || ||
Sbjct: 2547 aaagggtgcacaccatcctggaagcttctcgagaaccctgccaaccttcggtgtaactct 2488

                              
Query: 414  attcacgtctgttcttag 431
            |||||| || ||||||||
Sbjct: 2487 attcacatccgttcttag 2470
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 116/138 (84%)
 Strand = Plus / Plus

                                                                            
Query: 294      ctaaatattgactggaagagcggtcaggaacgccagcgtgtaaggagatgtcgacttgcc 353
                |||||||||||| ||||||||||||| ||| ||||  || |||||||| || ||||||||
Sbjct: 25997736 ctaaatattgacaggaagagcggtcaagaaagccaatgtataaggagaagtagacttgcc 25997795

                                                                            
Query: 354      gaagggcgcacaccagcgtggaagcttctcgagaaccgtctcgaccatcggcgtgaccct 413
                 ||||| |||||||| | ||||||||||||||||||| |  | ||| |||| || || ||
Sbjct: 25997796 aaagggtgcacaccatcctggaagcttctcgagaaccctgccaaccttcggtgtaactct 25997855

                                  
Query: 414      attcacgtctgttcttag 431
                |||||| || ||||||||
Sbjct: 25997856 attcacatccgttcttag 25997873
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>dbj|AK121271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106H08, full
            insert sequence
          Length = 4625

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 116/138 (84%)
 Strand = Plus / Minus

                                                                        
Query: 294  ctaaatattgactggaagagcggtcaggaacgccagcgtgtaaggagatgtcgacttgcc 353
            |||||||||||| ||||||||||||| ||| ||||  || |||||||| || ||||||||
Sbjct: 4272 ctaaatattgacaggaagagcggtcaagaaagccaatgtataaggagaagtagacttgcc 4213

                                                                        
Query: 354  gaagggcgcacaccagcgtggaagcttctcgagaaccgtctcgaccatcggcgtgaccct 413
             ||||| |||||||| | ||||||||||||||||||| |  | ||| |||| || || ||
Sbjct: 4212 aaagggtgcacaccatcctggaagcttctcgagaaccctgccaaccttcggtgtaactct 4153

                              
Query: 414  attcacgtctgttcttag 431
            |||||| || ||||||||
Sbjct: 4152 attcacatccgttcttag 4135
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>dbj|AK071665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106J16, full
           insert sequence
          Length = 940

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 116/138 (84%)
 Strand = Plus / Minus

                                                                       
Query: 294 ctaaatattgactggaagagcggtcaggaacgccagcgtgtaaggagatgtcgacttgcc 353
           |||||||||||| ||||||||||||| ||| ||||  || |||||||| || ||||||||
Sbjct: 655 ctaaatattgacaggaagagcggtcaagaaagccaatgtataaggagaagtagacttgcc 596

                                                                       
Query: 354 gaagggcgcacaccagcgtggaagcttctcgagaaccgtctcgaccatcggcgtgaccct 413
            ||||| |||||||| | ||||||||||||||||||| |  | ||| |||| || || ||
Sbjct: 595 aaagggtgcacaccatcctggaagcttctcgagaaccctgccaaccttcggtgtaactct 536

                             
Query: 414 attcacgtctgttcttag 431
           |||||| || ||||||||
Sbjct: 535 attcacatccgttcttag 518
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>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
             complete sequence
          Length = 163039

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 116/138 (84%)
 Strand = Plus / Plus

                                                                         
Query: 294   ctaaatattgactggaagagcggtcaggaacgccagcgtgtaaggagatgtcgacttgcc 353
             |||||||||||| ||||||||||||| ||| ||||  || |||||||| || ||||||||
Sbjct: 32063 ctaaatattgacaggaagagcggtcaagaaagccaatgtataaggagaagtagacttgcc 32122

                                                                         
Query: 354   gaagggcgcacaccagcgtggaagcttctcgagaaccgtctcgaccatcggcgtgaccct 413
              ||||| |||||||| | ||||||||||||||||||| |  | ||| |||| || || ||
Sbjct: 32123 aaagggtgcacaccatcctggaagcttctcgagaaccctgccaaccttcggtgtaactct 32182

                               
Query: 414   attcacgtctgttcttag 431
             |||||| || ||||||||
Sbjct: 32183 attcacatccgttcttag 32200
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>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13,
              complete sequence
          Length = 139226

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 116/138 (84%)
 Strand = Plus / Plus

                                                                          
Query: 294    ctaaatattgactggaagagcggtcaggaacgccagcgtgtaaggagatgtcgacttgcc 353
              |||||||||||| ||||||||||||| ||| ||||  || |||||||| || ||||||||
Sbjct: 123998 ctaaatattgacaggaagagcggtcaagaaagccaatgtataaggagaagtagacttgcc 124057

                                                                          
Query: 354    gaagggcgcacaccagcgtggaagcttctcgagaaccgtctcgaccatcggcgtgaccct 413
               ||||| |||||||| | ||||||||||||||||||| |  | ||| |||| || || ||
Sbjct: 124058 aaagggtgcacaccatcctggaagcttctcgagaaccctgccaaccttcggtgtaactct 124117

                                
Query: 414    attcacgtctgttcttag 431
              |||||| || ||||||||
Sbjct: 124118 attcacatccgttcttag 124135
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>gb|AY111312.1| Zea mays CL3400_1 mRNA sequence
          Length = 640

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 328 agcgtgtaaggagatgtcgacttgccgaagggcgcacaccagcgtggaagcttctc 383
           |||||||| ||||| || ||||||||||||||||  ||||| ||||| ||||||||
Sbjct: 251 agcgtgtacggagaggtggacttgccgaagggcgtgcaccaccgtggcagcttctc 306
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>gb|AC155246.1| Mus musculus BAC clone RP24-303C15 from 14, complete sequence
          Length = 151983

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 292   gcctaaatattgactggaagag 313
             ||||||||||||||||||||||
Sbjct: 66274 gcctaaatattgactggaagag 66295
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>ref|NM_125465.2| Arabidopsis thaliana unknown protein AT5G60720 mRNA, complete cds
          Length = 2340

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 245  tagtagtaccctaaaaggctaaaa 268
            ||||||||||||||| ||||||||
Sbjct: 2143 tagtagtaccctaaatggctaaaa 2120
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 390     cgtctcgaccatcggcgtgaccct 413
               |||||||||||||| |||||||||
Sbjct: 2925956 cgtctcgaccatcgacgtgaccct 2925933
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>emb|AL445218.12| Human DNA sequence from clone RP11-14O19 on chromosome 1 Contains two
             novel genes, complete sequence
          Length = 44203

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 173   tgaaagctacaaatgcaatgaatctaaa 200
             ||||||||||||||||||| ||| ||||
Sbjct: 11182 tgaaagctacaaatgcaatcaatttaaa 11155
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>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7
          Length = 349213

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 375    aagcttctcgagaaccgtctcgac 398
              ||||| ||||||||||||||||||
Sbjct: 238599 aagctgctcgagaaccgtctcgac 238622
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>gb|AY056811.1| Arabidopsis thaliana AT5g60720/mup24_130 mRNA, complete cds
          Length = 2199

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 245  tagtagtaccctaaaaggctaaaa 268
            ||||||||||||||| ||||||||
Sbjct: 2065 tagtagtaccctaaatggctaaaa 2042
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>gb|DQ080948.1| Uncultured Bacteroidetes bacterium isolate DGGE band GWS-c11-PA 16S
           ribosomal RNA gene, partial sequence
          Length = 502

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 125 ccaacggcagtcctctacgt 144
           ||||||||||||||||||||
Sbjct: 345 ccaacggcagtcctctacgt 364
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>dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUP24
          Length = 77999

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   tagtagtaccctaaaaggctaaaa 268
             ||||||||||||||| ||||||||
Sbjct: 61628 tagtagtaccctaaatggctaaaa 61651


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,528,911
Number of Sequences: 3902068
Number of extensions: 2528911
Number of successful extensions: 41032
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40980
Number of HSP's gapped (non-prelim): 52
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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