Clone Name | rbastl02c08 |
---|---|
Clone Library Name | barley_pub |
>emb|AL132826.18|HSJ581I13 Human DNA sequence from clone RP4-581I13 on chromosome 20 Contains the FLRT3 gene for fibronectin leucine rich transmembrane protein 3, complete sequence Length = 123695 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 aatttgttttaacatcacaaa 61 ||||||||||||||||||||| Sbjct: 110861 aatttgttttaacatcacaaa 110841
>ref|NM_129841.3| Arabidopsis thaliana protein binding AT2G42800 mRNA, complete cds Length = 1649 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tcataggttttggtgtaaga 25 |||||||||||||||||||| Sbjct: 49 tcataggttttggtgtaaga 30
>gb|AC020606.7| Homo sapiens BAC clone RP11-563O5 from 7, complete sequence Length = 151822 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 tttttcccatggcattcagagaga 90 |||||||| ||||||||||||||| Sbjct: 112778 tttttcccctggcattcagagaga 112801
>gb|AC146090.2| Pan troglodytes BAC clone RP43-47O15 from 7, complete sequence Length = 189400 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 tttttcccatggcattcagagaga 90 |||||||| ||||||||||||||| Sbjct: 94012 tttttcccctggcattcagagaga 93989
>emb|AL513549.13| Human DNA sequence from clone RP11-424H23 on chromosome 6 Contains part of a novel gene (FLJ20342), complete sequence Length = 131374 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aaagcaaccactgctgctga 168 |||||||||||||||||||| Sbjct: 113695 aaagcaaccactgctgctga 113714
>emb|AL139333.10| Human DNA sequence from clone RP11-536I19 on chromosome 6 Contains the 3' end of a novel gene, the 5' part of a novel gene similar to C21ORF5 (KIAA0933) and a CpG island, complete sequence Length = 98444 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 caaatttgttttaacatcacaaat 62 ||||| |||||||||||||||||| Sbjct: 86751 caaatatgttttaacatcacaaat 86774
>gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D19 map m551, complete sequence Length = 115310 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tcataggttttggtgtaaga 25 |||||||||||||||||||| Sbjct: 72204 tcataggttttggtgtaaga 72185
>gb|BT023464.1| Arabidopsis thaliana At2g42800 gene, complete cds Length = 1602 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tcataggttttggtgtaaga 25 |||||||||||||||||||| Sbjct: 46 tcataggttttggtgtaaga 27
>emb|BX818831.1|CNS0A9RH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB17ZF11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1611 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tcataggttttggtgtaaga 25 |||||||||||||||||||| Sbjct: 50 tcataggttttggtgtaaga 31
>gb|AC157483.2| Pan troglodytes BAC clone CH251-287G22 from chromosome unknown, complete sequence Length = 163028 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 tttttcccatggcattcagagaga 90 |||||||| ||||||||||||||| Sbjct: 94022 tttttcccctggcattcagagaga 93999
>dbj|AP005269.1| Pan troglodytes DNA, chromosome 7 clone:PTB-102E09, complete sequence Length = 172438 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 tttttcccatggcattcagagaga 90 |||||||| ||||||||||||||| Sbjct: 12943 tttttcccctggcattcagagaga 12920 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,792,260 Number of Sequences: 3902068 Number of extensions: 1792260 Number of successful extensions: 119581 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119564 Number of HSP's gapped (non-prelim): 17 length of query: 206 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 184 effective length of database: 17,147,199,772 effective search space: 3155084758048 effective search space used: 3155084758048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)