ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02c05 |
|---|---|
| Clone Library Name | barley_pub |
>OP1S2_BRARE (Q9W6A8) Opsin-1, short-wave-sensitive 2 (Blue-sensitive opsin)| (Blue cone photoreceptor pigment) (Opsin SWS-2) Length = 354 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -3 Query: 196 ECCIIIVFFFCTATPFET*TFCSGR*I*VMQKTRVGRSSSS*TQ 65 E ++ +F FC A PF T FC G+ + ++ ++ S+ TQ Sbjct: 208 ESYVMFLFCFCFAVPFSTIVFCYGQLLITLKLAAKAQADSASTQ 251
>APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9| (Pseudo-response regulator 9) Length = 468 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -3 Query: 394 PTRKKNSANLYRHMWASMSRRSPPAKMATSAP 299 P RK NL++H+W ++ R P A S P Sbjct: 142 PMRKNELKNLWQHVWRRLTLRDDPTAHAQSLP 173
>OPSB_CARAU (P32310) Blue-sensitive opsin (Blue cone photoreceptor pigment)| Length = 351 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -3 Query: 196 ECCIIIVFFFCTATPFET*TFCSGR*I*VMQKTRVGRSSSS*TQ 65 E ++ +F FC A PF T FC G+ + ++ ++ S+ TQ Sbjct: 205 ESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSASTQ 248
>YJY2_YEAST (P47087) Hypothetical 23.2 kDa protein in SPC1-ILV3 intergenic| region Length = 207 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = -3 Query: 256 LFRWQGFLFVLFQAPCANVAECCIIIVFFFCTATP 152 + R F F+ F C + CI IVFFF P Sbjct: 8 ILRQSSFNFITFYLACQLLTFLCIYIVFFFVKFLP 42
>ZN148_RAT (Q62806) Zinc finger protein 148 (Zinc finger DNA-binding protein| 89) (Transcription factor ZBP-89) Length = 794 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 147 SNGVAVQKKKTMMIQHSATFAQGA*NRTKRNPCHLNKP 260 S+ A K M+Q + F Q A +RT +N +LN P Sbjct: 589 SSSQASSSDKANMLQEYSKFLQQALDRTSQNDAYLNSP 626
>ZN148_MOUSE (Q61624) Zinc finger protein 148 (Zinc finger DNA-binding protein| 89) (Transcription factor ZBP-89) (G-rich box-binding protein) (Beta enolase repressor factor 1) (Transcription factor BFCOL1) Length = 794 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 147 SNGVAVQKKKTMMIQHSATFAQGA*NRTKRNPCHLNKP 260 S+ A K M+Q + F Q A +RT +N +LN P Sbjct: 589 SSSQASSSDKANMLQEYSKFLQQALDRTSQNDAYLNSP 626
>ZN148_HUMAN (Q9UQR1) Zinc finger protein 148 (Zinc finger DNA-binding protein| 89) (Transcription factor ZBP-89) Length = 794 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 147 SNGVAVQKKKTMMIQHSATFAQGA*NRTKRNPCHLNKP 260 S+ A K M+Q + F Q A +RT +N +LN P Sbjct: 589 SSSQASSSDKANMLQEYSKFLQQALDRTSQNDAYLNSP 626
>LHX61_MOUSE (Q9R1R0) LIM/homeobox protein Lhx6.1| Length = 363 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +1 Query: 277 CRTRHKKQAQMSPFWPAGYALTYLPT 354 CR RHKK P P+G T LP+ Sbjct: 270 CRARHKKHTPQHPVPPSGAPPTRLPS 295
>RPC2_MOUSE (P59470) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -1 Query: 390 LERKTQQTCTGICGQVCQGVARRPKWRH 307 L+R T QT + G + R+P WRH Sbjct: 779 LKRYTNQTFDKVMGPMLDAATRKPIWRH 806
>RPC2_HUMAN (Q9NW08) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -1 Query: 390 LERKTQQTCTGICGQVCQGVARRPKWRH 307 L+R T QT + G + R+P WRH Sbjct: 779 LKRYTNQTFDKVMGPMLDAATRKPIWRH 806
>GRIK1_MOUSE (Q60934) Glutamate receptor, ionotropic kainate 1 precursor| (Glutamate receptor 5) (GluR-5) (GluR5) Length = 836 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -3 Query: 403 STCPTRKKNSANLYRHMWASMSRRSPPA 320 ST KK+ + Y MWA MS R P A Sbjct: 689 STMTFFKKSKISTYEKMWAFMSSRQPSA 716
>YPL2_CAEEL (O44440) Protein yippee-like B0546.4| Length = 161 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Frame = -3 Query: 391 TRKKNSANLYRHMWASMSRRSPPAKMATS----APVFCASCDRKIG 266 T A L++ W + R KM T VFC +C++K+G Sbjct: 37 TGSTGPATLFKRAWNVVYGRCEHRKMTTGWHTVRDVFCVTCNQKLG 82
>RL1_RICPR (Q9ZE23) 50S ribosomal protein L1| Length = 238 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -2 Query: 398 MSYSKEKLSKPVQAYVGKYVKA*PAGQNGD 309 +S+S + L K + A++G +KA P G G+ Sbjct: 186 LSFSDQDLLKNLNAFIGAVIKAKPVGLKGN 215
>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch 3)| [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2319 Score = 23.1 bits (48), Expect(2) = 9.6 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = -2 Query: 362 QAYVGKYVKA*PAGQNGDIC 303 + Y+G YV P G +GD C Sbjct: 1102 RGYMGGYVCECPTGYSGDSC 1121 Score = 22.3 bits (46), Expect(2) = 9.6 Identities = 6/21 (28%), Positives = 10/21 (47%) Frame = -3 Query: 214 PCANVAECCIIIVFFFCTATP 152 PC N C ++ + C+ P Sbjct: 1132 PCQNGGSCIDLVAHYLCSCPP 1152 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,488,371 Number of Sequences: 219361 Number of extensions: 1005593 Number of successful extensions: 2602 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2533 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2602 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
