ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GAT5B_XENLA (P43696) GATA-binding factor 5-B (Transcription fact... 31 1.3
2H1_TIGCA (P35060) Histone H1 31 1.7
3GAT5A_XENLA (P43695) GATA-binding factor 5-A (Transcription fact... 31 1.7
4FHAB_BORPE (P12255) Filamentous hemagglutinin 31 1.7
5UT1_HUMAN (Q13336) Urea transporter, erythrocyte 30 3.8
6REPS1_MOUSE (O54916) RalBP1-associated Eps domain-containing pro... 29 6.4
7AKA12_HUMAN (Q02952) A-kinase anchor protein 12 (A-kinase anchor... 29 6.4
8FOG_DROME (P40795) Protein folded gastrulation precursor [Contai... 28 8.4
9K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043 28 8.4

>GAT5B_XENLA (P43696) GATA-binding factor 5-B (Transcription factor xGATA-5B)|
          Length = 388

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 371 ESHMEKTKAPMTPNVLSLGKKPPVGEGAAGKGG 273
           ESH     +P TP+  S    PPVG  +A  GG
Sbjct: 73  ESHAFNASSPHTPSGFSYSHSPPVGNSSARDGG 105



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>H1_TIGCA (P35060) Histone H1|
          Length = 181

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 452 EKPFILSGNGAGQNGQTKVSDSAGFRRESHMEKTKAPMTPNVLSLGKKPPVGEGAA 285
           EK  ++   GAG +G  K++ +A   +   + K K   TP   +   K P GE  A
Sbjct: 74  EKKKLVQTKGAGASGSFKLAAAAKAEKPKAVAKPKKAKTPKKKAAATKKPTGEKKA 129



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>GAT5A_XENLA (P43695) GATA-binding factor 5-A (Transcription factor xGATA-5A)|
          Length = 390

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 371 ESHMEKTKAPMTPNVLSLGKKPPVGEGAAGKGG 273
           ESH     +P TP   S    PPVG  +A  GG
Sbjct: 72  ESHAFNASSPHTPTGFSYSHSPPVGNSSARDGG 104



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>FHAB_BORPE (P12255) Filamentous hemagglutinin|
          Length = 3590

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 31   ITAAMAVQYFQDYLQFSLTANTN*CSHSKGDWKNRNTVERMHHLLD 168
            +    A++YF+  L  SLTA  N    S   W  ++T E + +LLD
Sbjct: 1907 VRTVSAMEYFKTPLPVSLTALDNRAGLSPATWNFQSTYELLDYLLD 1952



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>UT1_HUMAN (Q13336) Urea transporter, erythrocyte|
          Length = 389

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 210 HVPASSCLVFVFTRLVGPPP*PAFAGCSFTNWGFLAQAQNIRCHWSFC---LLHMTLTTK 380
           H+ A  C +F            A+ G    N  F+A+     C W FC   LL + +TTK
Sbjct: 309 HLLALGCALFT-----------AYLGVGMAN--FMAEVGLPACTWPFCLATLLFLIMTTK 355

Query: 381 SCTIRYLCLAILTSP 425
           +  I  + L+ +T P
Sbjct: 356 NSNIYKMPLSKVTYP 370



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>REPS1_MOUSE (O54916) RalBP1-associated Eps domain-containing protein 1|
           (RalBP1-interacting protein 1)
          Length = 743

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 298 VKEQPAKAGQGGGPTSRVKTKTRQELAGTWRATLPLLPEGDQDYPEDDASSQLYSGFSSL 119
           V EQP + G  G P     +K+            P +P  +Q +PE + SS+ +  FS  
Sbjct: 328 VGEQPGEVGYSGSPAEAPPSKS------------PSMPSLNQTWPELNQSSEQWETFSER 375

Query: 118 PSN 110
            S+
Sbjct: 376 SSS 378



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>AKA12_HUMAN (Q02952) A-kinase anchor protein 12 (A-kinase anchor protein 250|
           kDa) (AKAP 250) (Myasthenia gravis autoantigen gravin)
          Length = 1781

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -1

Query: 422 AGQNGQTKVSDSAGFRRESHMEKTKAPMTPNVLSLGKKPPVGEGAAGKG 276
           A   G  KV    GF+     +KT+ P T  +L++  K   GEGAAG G
Sbjct: 166 ANDIGFKKVFKFVGFKFTVKKDKTEKPDTVQLLTV--KKDEGEGAAGAG 212



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>FOG_DROME (P40795) Protein folded gastrulation precursor [Contains: Protein|
           folded gastrulation; G protein-coupled receptor ligand]
          Length = 730

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = -2

Query: 259 PTSRVKTKTRQELAGTWRATLPLLPEGDQDYPEDDASSQLYSGFSSLPSNVNINLCWP*V 80
           PT  VK +    LAG    + P  P GD DY +D+ S ++    S +P+ +   L  P V
Sbjct: 90  PTDLVKQELI--LAGGSNGSPPPPPIGDYDYGDDEESEEIVYDLSVIPTAMQDGLP-PSV 146

Query: 79  RIGD 68
             GD
Sbjct: 147 GTGD 150



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>K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043|
          Length = 1716

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 289  QPAKAGQGGGPTSRVKTKTRQELAGTWRATLPLLPEGDQDYPEDDASSQLYSGFS 125
            +P    +GGGP  R +   R + A   R+TLP      Q  P  +   + Y GFS
Sbjct: 1242 KPEGGSEGGGPGGR-QDHDRSKNAYLQRSTLPRSQLPPQTRPAGNKDEEEYEGFS 1295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,362,242
Number of Sequences: 219361
Number of extensions: 1254219
Number of successful extensions: 3923
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3922
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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