ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02c03 |
|---|---|
| Clone Library Name | barley_pub |
>ASGR1_PONPY (Q5RBQ8) Asialoglycoprotein receptor 1 (ASGPR 1) (ASGP-R 1)| Length = 290 Score = 30.4 bits (67), Expect = 1.8 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Frame = +1 Query: 277 RLKS-EVELPRGTKDILMDDFCKLRLNEKEFLSDVRVLDCRQA 402 ++KS E +L + KD L +D L L+ K+F+SD+R L C+ A Sbjct: 100 KMKSLESQLEKQQKD-LSEDHSSLLLHVKQFVSDLRSLSCQMA 141
>ASGR1_HUMAN (P07306) Asialoglycoprotein receptor 1 (ASGPR 1) (ASGP-R 1)| (Hepatic lectin H1) Length = 290 Score = 30.4 bits (67), Expect = 1.8 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Frame = +1 Query: 277 RLKS-EVELPRGTKDILMDDFCKLRLNEKEFLSDVRVLDCRQA 402 ++KS E +L + KD L +D L L+ K+F+SD+R L C+ A Sbjct: 100 KMKSLESQLEKQQKD-LSEDHSSLLLHVKQFVSDLRSLSCQMA 141
>SSRP_CORDI (Q6NIL8) SsrA-binding protein| Length = 163 Score = 29.6 bits (65), Expect = 3.1 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = +1 Query: 208 RDGHEIAVVVSLHL*RCFYLTIGRLKSEVELPRGTKDILMDDFCKLRLNEKEFLSDV 378 RDG++ V +SL Y GRLK E+ L +G +D K R E+E + D+ Sbjct: 104 RDGNKTLVPLSL------YFKEGRLKVELGLAQGKQDYDKRQDIKRRTEEREVVRDL 154
>RGA2_YEAST (Q06407) Rho-type GTPase-activating protein 2| Length = 1009 Score = 29.6 bits (65), Expect = 3.1 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 265 LTIGRLKSEVELPRGTKDILMDDFCKLRLNEKEFLSDV 378 LT+ +LK +V GTK L+ D LRL ++ L+DV Sbjct: 623 LTLRKLKLDVRELEGTKKKLLQDVENLRLAKERLLNDV 660
>SYH_LISMO (Q8Y708) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 425 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +1 Query: 289 EVELPRGTKDILMDDFCKLRLNEKEF 366 +++LPRGT+DIL ++ K E EF Sbjct: 2 DLQLPRGTRDILPEEVSKWHFLETEF 27
>SYH_LISMF (Q71ZF0) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 425 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +1 Query: 289 EVELPRGTKDILMDDFCKLRLNEKEF 366 +++LPRGT+DIL ++ K E EF Sbjct: 2 DLQLPRGTRDILPEEVSKWHFLETEF 27
>ASGR1_MOUSE (P34927) Asialoglycoprotein receptor 1 (ASGPR 1) (ASGP-R 1)| (Hepatic lectin 1) (MHL-1) Length = 283 Score = 28.9 bits (63), Expect = 5.3 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = +1 Query: 268 TIGRLKSEVE--LPRGTKDILMDDFCKLRLNEKEFLSDVRVLDCRQA 402 ++GR VE L + KD L +D L L+ K+ +SDVR L C+ A Sbjct: 95 SVGRKMKLVESKLEKQQKD-LTEDHSSLLLHVKQLVSDVRSLSCQMA 140
>SYH_STAHJ (Q4L6X6) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 423 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 292 VELPRGTKDILMDDFCKLRLNEKEFLSDVRVLDCRQACGPISE 420 + +PRGT+DIL +D K R E + +++ + ++ PI E Sbjct: 2 IRIPRGTQDILPEDSSKWRYIENQLDKLMKLYNYKEIRTPIFE 44
>YM48_YEAST (Q12751) Hypothetical 113.2 kDa protein in SSO2-HSC82 intergenic| region Length = 981 Score = 28.5 bits (62), Expect = 6.9 Identities = 15/52 (28%), Positives = 29/52 (55%) Frame = -2 Query: 372 RQEFFLIQSEFAEIIHQDVLRTSG*FYLRFQPSNSEIETTLQMQADNDRDFM 217 + + FL++ +IH D+L ++G L F+ + +++T L D D D+M Sbjct: 916 KDDSFLMRRSAVHLIH-DLLYSTGFDLLPFEYNYDKLKTLLSYVRDQDEDYM 966
>FAT_DROME (P33450) Cadherin-related tumor suppressor precursor (Protein fat)| Length = 5147 Score = 28.5 bits (62), Expect = 6.9 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = -3 Query: 278 RPIVR*KQRYKCRLTTTAIS*PSRNTVASSTLRDFLLIHVVILNFNELVCLFGLDSRS 105 RP+ R +++ RLT A S S + ASS ++++ I++ N+ +F LD S Sbjct: 892 RPLDR-EEQANYRLTILASSSSSSSAAASSVSYGQCIVNIAIIDLNDNAPVFALDRES 948
>ASGR1_RAT (P02706) Asialoglycoprotein receptor 1 (ASGPR 1) (ASGP-R 1)| (Hepatic lectin 1) (RHL-1) Length = 283 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = +1 Query: 289 EVELPRGTKDILMDDFCKLRLNEKEFLSDVRVLDCRQA 402 E +L + +D L +D +L L+ K+ +SDVR L C+ A Sbjct: 104 ESQLEKHQED-LREDHSRLLLHVKQLVSDVRSLSCQMA 140
>SYH_STAES (Q8CS98) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 424 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +1 Query: 292 VELPRGTKDILMDDFCKLRLNEKEFLSDVRVLDCRQACGPISE 420 +++PRGT+DIL D K R E + + + + ++ PI E Sbjct: 2 IKMPRGTQDILPQDSAKWRYIENRLHTLMELYNYKEIRTPIFE 44
>SYH_STAEQ (Q5HNS1) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 424 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +1 Query: 292 VELPRGTKDILMDDFCKLRLNEKEFLSDVRVLDCRQACGPISE 420 +++PRGT+DIL D K R E + + + + ++ PI E Sbjct: 2 IKMPRGTQDILPQDSAKWRYIENRLHTLMELYNYKEIRTPIFE 44 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,788,854 Number of Sequences: 219361 Number of extensions: 1012742 Number of successful extensions: 2434 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2374 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2434 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
