ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxyl... 353 3e-94
2gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 256 5e-65
3gb|AY089999.1| Lolium perenne CACTA-family transposon sequence 52 0.002
4gb|AC162925.4| Mus musculus BAC clone RP23-302D18 from chromosom... 44 0.37
5gb|AC084301.12| Homo sapiens 3 BAC RP11-203F4 (Roswell Park Canc... 42 1.5
6gb|CP000013.1| Borrelia garinii PBi, complete genome 40 5.7
7gb|AC092213.4| Homo sapiens BAC clone RP11-190I6 from 7, complet... 40 5.7
8gb|AC007270.2| Homo sapiens BAC clone GS1-77A9 from 7, complete ... 40 5.7
9emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chr... 40 5.7
10gb|AC098563.6| Rattus norvegicus 1 BAC CH230-123A15 (Children's ... 40 5.7
11emb|BX539315.5| Zebrafish DNA sequence from clone DKEY-245E14, c... 40 5.7
12gb|AC023755.14| Homo sapiens chromosome 12, clone RP11-44P17, co... 40 5.7
13gb|AC011257.9| Homo sapiens chromosome , clone RP11-26E5, comple... 40 5.7
14gb|DP000046.1| Aotus nancymaae target 106 genomic scaffold 40 5.7
15gb|DP000047.1| Saimiri boliviensis boliviensis target 106 genomi... 40 5.7
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
17dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
18gb|AE000783.1| Borrelia burgdorferi B31, complete genome 40 5.7
19dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
20emb|X17012.1|RNIGF2 Rat IGFII gene for insulin-like growth facto... 40 5.7
21gb|U71085.1|MMU71085 Mus musculus insulin-like growth factor II ... 40 5.7
22emb|CT027994.2| M.spretus DNA sequence from clone XX-CH35_17P24 ... 40 5.7
23emb|BX001028.6| Mouse DNA sequence from clone RP23-235D4 on chro... 40 5.7
24gb|AC013548.13| Mus musculus chromosome 7, clone RP23-209O22, co... 40 5.7
25dbj|AP003182.2| Mus musculus genomic DNA, chromosome 7 clone:B18... 40 5.7 
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and
              SNF2P genes, complete cds; nucellin pseudogene, complete
              sequence; putative transposase, phosphatidylinositol
              phosphatidylcholine transfer protein sec14 cytosolic-like
              protein, and phytochrome P450-like protein genes, complete
              cds; and unknown genes
          Length = 438828

 Score =  353 bits (178), Expect = 3e-94
 Identities = 229/246 (93%)
 Strand = Plus / Minus

                                                                          
Query: 182    ggagcgtggatgaagccaccgtatttcgtgatggtcatgaaatcgcggtcgttgtcagcc 241
              ||||||||||||||||| |||| | ||||||||||||||||||||| | |||||||||||
Sbjct: 322832 ggagcgtggatgaagccgccgtctctcgtgatggtcatgaaatcgcaggcgttgtcagcc 322773

                                                                          
Query: 242    tgcatttgtagcgttgtttctatctcactattggacggttgaaatctgaggtagaactac 301
              ||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||| |
Sbjct: 322772 tgcatttgtagcgttgtgtctatctcactgttagacggttgatatctgaggtagaactgc 322713

                                                                          
Query: 302    cccgaggtacgaaggacatcttgatggatgatttctgcaaactccgactgaatgagaaag 361
              |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 322712 cccgaggtacgaaggacatcttgatggatgatttctgcaaactccgactggatgcgaaag 322653

                                                                          
Query: 362    aattcttgtctgatgtccgcgtcctggattgccgacaagcgtgcggcccaatatctgagg 421
              |||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||| 
Sbjct: 322652 aattcttgtctgatgtccgcgtcctggattgccgacaatcttgcggcccaatctttgaga 322593

                    
Query: 422    ttattt 427
              ||||||
Sbjct: 322592 ttattt 322587



 Score =  178 bits (90), Expect = 1e-41
 Identities = 105/109 (96%), Gaps = 2/109 (1%)
 Strand = Plus / Minus

                                                                          
Query: 57     agcacgattcatggtcctactaataaatagcatcgattacatataagttgaacgactgtc 116
              ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 322998 agcacgattcatggtcctactaatacatagcatcgattacatataagttgaacgactgtc 322939

                                                               
Query: 117    caaaccaaagagacatacaagttcattaaagtttaatattacaacatga 165
              ||||||||||| |||||||||||||||||||||||  ||||||||||||
Sbjct: 322938 caaaccaaagatacatacaagttcattaaagttta--attacaacatga 322892



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 18     acatacaagttcactaaagtttaat 42
              ||||||||||||| |||||||||||
Sbjct: 322926 acatacaagttcattaaagtttaat 322902
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>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score =  256 bits (129), Expect = 5e-65
 Identities = 207/233 (88%)
 Strand = Plus / Plus

                                                                          
Query: 181    cggagcgtggatgaagccaccgtatttcgtgatggtcatgaaatcgcggtcgttgtcagc 240
              |||||||||||||||||| |||| | |||||   |||||||||   ||| ||||||||||
Sbjct: 101680 cggagcgtggatgaagccgccgtctgtcgtgggagtcatgaaacaacgggcgttgtcagc 101739

                                                                          
Query: 241    ctgcatttgtagcgttgtttctatctcactattggacggttgaaatctgaggtagaacta 300
              ||||||||||||  |||| || || ||||||||||||||||||  |||||||||||||| 
Sbjct: 101740 ctgcatttgtaggattgtgtcgatgtcactattggacggttgatttctgaggtagaactg 101799

                                                                          
Query: 301    ccccgaggtacgaaggacatcttgatggatgatttctgcaaactccgactgaatgagaaa 360
              |||| ||||||||||||||||||||||||||||||| |||||||||||||| |||  |||
Sbjct: 101800 ccccaaggtacgaaggacatcttgatggatgatttccgcaaactccgactggatgccaaa 101859

                                                                   
Query: 361    gaattcttgtctgatgtccgcgtcctggattgccgacaagcgtgcggcccaat 413
              |||||||||||||||||||||||||||||||||||||| ||  ||||||||||
Sbjct: 101860 gaattcttgtctgatgtccgcgtcctggattgccgacacgctcgcggcccaat 101912



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 77/85 (90%), Gaps = 5/85 (5%)
 Strand = Plus / Plus

                                                                          
Query: 84     tagcatcgattacatataagttgaacgactgtccaaaccaaagagaca---tacaagttc 140
              ||||||||||||||| |||||||||||||| || ||||||||||||||   |||||||||
Sbjct: 101534 tagcatcgattacatctaagttgaacgactctcgaaaccaaagagacatactacaagttc 101593

                                       
Query: 141    attaaagtttaatattacaacatga 165
              |||||||||||  ||||||||||||
Sbjct: 101594 attaaagttta--attacaacatga 101616
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>gb|AY089999.1| Lolium perenne CACTA-family transposon sequence
          Length = 12483

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 83/102 (81%)
 Strand = Plus / Minus

                                                                         
Query: 235   gtcagcctgcatttgtagcgttgtttctatctcactattggacggttgaaatctgaggta 294
             |||| |||||||||| ||| |||| ||||| ||||| || ||||| ||| | | |  |||
Sbjct: 10621 gtcaccctgcatttggagcattgtgtctatgtcactgttcgacggctgatagccggcgta 10562

                                                       
Query: 295   gaactaccccgaggtacgaaggacatcttgatggatgatttc 336
             ||||| ||||| | | | || |||||||||||||||||||||
Sbjct: 10561 gaactcccccgcgcttctaacgacatcttgatggatgatttc 10520
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>gb|AC162925.4| Mus musculus BAC clone RP23-302D18 from chromosome 6, complete sequence
          Length = 225947

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 33     aaagtttaatatgacaactata 54
              ||||||||||||||||||||||
Sbjct: 159378 aaagtttaatatgacaactata 159357
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>gb|AC084301.12| Homo sapiens 3 BAC RP11-203F4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172875

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 134    caagttcattaaagtttaata 154
              |||||||||||||||||||||
Sbjct: 101194 caagttcattaaagtttaata 101214
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>gb|CP000013.1| Borrelia garinii PBi, complete genome
          Length = 904246

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    tttaatattacaacatgaat 167
              ||||||||||||||||||||
Sbjct: 632705 tttaatattacaacatgaat 632724
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>gb|AC092213.4| Homo sapiens BAC clone RP11-190I6 from 7, complete sequence
          Length = 137237

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   caagttcattaaagtttaat 153
             ||||||||||||||||||||
Sbjct: 88603 caagttcattaaagtttaat 88584
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>gb|AC007270.2| Homo sapiens BAC clone GS1-77A9 from 7, complete sequence
          Length = 182958

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    caagttcattaaagtttaat 153
              ||||||||||||||||||||
Sbjct: 121577 caagttcattaaagtttaat 121596
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>emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chromosome 9 Contains a
            novel pseudogene, complete sequence
          Length = 110443

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  agacatacaagttcattaaa 146
            ||||||||||||||||||||
Sbjct: 5619 agacatacaagttcattaaa 5600
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>gb|AC098563.6| Rattus norvegicus 1 BAC CH230-123A15 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 250414

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   aagttcattaaagtttaata 154
             ||||||||||||||||||||
Sbjct: 57662 aagttcattaaagtttaata 57643
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>emb|BX539315.5| Zebrafish DNA sequence from clone DKEY-245E14, complete sequence
          Length = 172139

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    atttgtagcgttgtttctat 264
              ||||||||||||||||||||
Sbjct: 164377 atttgtagcgttgtttctat 164358
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>gb|AC023755.14| Homo sapiens chromosome 12, clone RP11-44P17, complete sequence
          Length = 135689

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    catacaagttcactaaagtt 38
             ||||||||||||||||||||
Sbjct: 17034 catacaagttcactaaagtt 17053
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>gb|AC011257.9| Homo sapiens chromosome , clone RP11-26E5, complete sequence
          Length = 184194

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    catacaagttcactaaagtt 38
             ||||||||||||||||||||
Sbjct: 71462 catacaagttcactaaagtt 71481
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>gb|DP000046.1| Aotus nancymaae target 106 genomic scaffold
          Length = 387541

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      agtagcaattcacagagaca 20
              ||||||||||||||||||||
Sbjct: 141563 agtagcaattcacagagaca 141582
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>gb|DP000047.1| Saimiri boliviensis boliviensis target 106 genomic scaffold
          Length = 211360

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     agtagcaattcacagagaca 20
             ||||||||||||||||||||
Sbjct: 31594 agtagcaattcacagagaca 31613
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 131      atacaagttcattaaagttt 150
                ||||||||||||||||||||
Sbjct: 39691061 atacaagttcattaaagttt 39691080
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>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0456E05
          Length = 173699

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    atacaagttcattaaagttt 150
              ||||||||||||||||||||
Sbjct: 172017 atacaagttcattaaagttt 172036
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>gb|AE000783.1| Borrelia burgdorferi B31, complete genome
          Length = 910724

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    tttaatattacaacatgaat 167
              ||||||||||||||||||||
Sbjct: 630755 tttaatattacaacatgaat 630774
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>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0470A12
          Length = 185095

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   atacaagttcattaaagttt 150
             ||||||||||||||||||||
Sbjct: 41960 atacaagttcattaaagttt 41979
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>emb|X17012.1|RNIGF2 Rat IGFII gene for insulin-like growth factor II
          Length = 30000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   aagttcattaaagtttaata 154
             ||||||||||||||||||||
Sbjct: 17265 aagttcattaaagtttaata 17246
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>gb|U71085.1|MMU71085 Mus musculus insulin-like growth factor II (Igf2) gene, complete cds
          Length = 27874

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   aagttcattaaagtttaata 154
             ||||||||||||||||||||
Sbjct: 16194 aagttcattaaagtttaata 16175
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>emb|CT027994.2| M.spretus DNA sequence from clone XX-CH35_17P24 on chromosome 7,
             complete sequence
          Length = 169471

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   aagttcattaaagtttaata 154
             ||||||||||||||||||||
Sbjct: 49246 aagttcattaaagtttaata 49227
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>emb|BX001028.6| Mouse DNA sequence from clone RP23-235D4 on chromosome X, complete
             sequence
          Length = 141668

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    acagagacatacaagttcac 31
             ||||||||||||||||||||
Sbjct: 20757 acagagacatacaagttcac 20738
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>gb|AC013548.13| Mus musculus chromosome 7, clone RP23-209O22, complete sequence
          Length = 220084

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   aagttcattaaagtttaata 154
             ||||||||||||||||||||
Sbjct: 53183 aagttcattaaagtttaata 53164
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>dbj|AP003182.2| Mus musculus genomic DNA, chromosome 7 clone:B189M11, complete
             sequences
          Length = 105288

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   aagttcattaaagtttaata 154
             ||||||||||||||||||||
Sbjct: 23308 aagttcattaaagtttaata 23289


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,459,850
Number of Sequences: 3902068
Number of extensions: 3459850
Number of successful extensions: 66592
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66486
Number of HSP's gapped (non-prelim): 105
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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