ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IBP3_RAT (P15473) Insulin-like growth factor-binding protein 3 p... 29 5.3
2NU4M_LOCMI (Q36424) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 28 9.0

>IBP3_RAT (P15473) Insulin-like growth factor-binding protein 3 precursor|
           (IGFBP-3) (IBP-3) (IGF-binding protein 3)
          Length = 292

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 13/84 (15%)
 Frame = +1

Query: 163 IWRPLLSELQVTR-----IVASGTIPVNPPASC------ILAQQFPPVTLSSLYE--N*P 303
           +W   L+ L + R        +G +   P   C       LAQ  PP T  +  E    P
Sbjct: 8   LWAAALTALTLLRGPPVARAGAGAVGAGPVVRCEPCDARALAQCAPPPTAPACTELVREP 67

Query: 304 GMVGMETCFLPYGNFCSVNFRRCG 375
           G     TC L  G+ C V   RCG
Sbjct: 68  GCGCCLTCALREGDACGVYTERCG 91



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>NU4M_LOCMI (Q36424) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 444

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 15/66 (22%)
 Frame = -2

Query: 153 YSFLLGV*TWNQTVSILFTLVTCCLLIYSNASV---------------VL*EVLYWWFSN 19
           YSF+L          IL +L  CCL+I +++S+               +L  +L+  FS+
Sbjct: 57  YSFML----------ILLSLWICCLMITASSSIYSSSYHPNFFVFVVLLLLIMLFCSFSS 106

Query: 18  INLFSF 1
           +NLFSF
Sbjct: 107 LNLFSF 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,951,988
Number of Sequences: 219361
Number of extensions: 1225431
Number of successful extensions: 3215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3215
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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