ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NIA_EMENI (P22945) Nitrate reductase [NADPH] (EC 1.7.1.3) (NR) 30 2.3
2K1210_HUMAN (Q9ULL0) Protein KIAA1210 29 5.0
3RDR1_YEAST (Q08904) Protein RDR1 (Repressor of drug resistance p... 28 6.6
4AAA1_HUMAN (Q9NS82) Asc-type amino acid transporter 1 (Asc-1) 28 8.6

>NIA_EMENI (P22945) Nitrate reductase [NADPH] (EC 1.7.1.3) (NR)|
          Length = 873

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +1

Query: 250 RPSTVTPKQQTSKKF*GKTSLSSSTRPMKRPLLHLGRKAGPSNANCTAINTSDPE 414
           RP+ +TPK  T      KTS+SS T      L H  +  G        + T DP+
Sbjct: 609 RPTFLTPKAWTKATLTKKTSVSSDTHIFTLSLEHPSQALGLPTGQHLMLKTPDPK 663



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>K1210_HUMAN (Q9ULL0) Protein KIAA1210|
          Length = 1093

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = +1

Query: 151 QLFTGHDTVELGSMIAGRKRRLLYPHAASYAANRPSTVTPKQQTSKKF*GKTSLSSSTRP 330
           Q+F+    ++ GS +A      L P+  S + ++P         S     K  +SS   P
Sbjct: 587 QIFSESSALKRGSDVAP-----LPPNLPSKSLSKPEVKHQVFSDSGSANPKGGISSKMLP 641

Query: 331 MKRPLLHLGRKAGP 372
           MK PL  LGR   P
Sbjct: 642 MKHPLQSLGRPEDP 655



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>RDR1_YEAST (Q08904) Protein RDR1 (Repressor of drug resistance protein 1)|
          Length = 546

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 220 YPHAASYAANRPSTVTPKQQTSKKF*GKTSLSSSTRPMKRPLLHLGRKAGPSNA-NCTAI 396
           Y +   Y   R  + +P+ Q      G+TS  + +RP   P +H   +  P N  N T+ 
Sbjct: 42  YGYVCHYIDGRVPSASPQVQQV----GETSPDTESRPFVLPGIHRNEQPQPINTQNVTSQ 97

Query: 397 NTSDP 411
           N  DP
Sbjct: 98  NIVDP 102



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>AAA1_HUMAN (Q9NS82) Asc-type amino acid transporter 1 (Asc-1)|
          Length = 523

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 398 LIAVQFALDGPALRPRCKSGRFMGLV-ELLKLVLPQNFLEVCCFGVTVLGLL 246
           +I V+     PAL   C +   + LV +   L+   +F+   C+GVT+LGLL
Sbjct: 356 MIHVRHCTPIPALLVCCGATAVIMLVGDTYTLINYVSFINYLCYGVTILGLL 407


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,067,384
Number of Sequences: 219361
Number of extensions: 1070838
Number of successful extensions: 2430
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2430
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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