Clone Information

BLAST Search Result

Clone Name	rbastl02b06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY532594.1\| Triticum aestivum minichromosomal maintenance fac...	345	8e-92
2	gb\|AY532593.1\| Triticum aestivum minichromosomal maintenance fac...	218	1e-53
3	dbj\|AK121422.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	147	4e-32
4	gb\|AY109731.1\| Zea mays CL9169_1 mRNA sequence	147	4e-32
5	gb\|AC131343.4\| Oryza sativa (japonica cultivar-group) chromosome...	92	2e-15
6	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	92	2e-15
7	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	92	2e-15
8	gb\|AC102105.8\| Mus musculus chromosome 12, clone RP23-89G24, com...	42	1.5
9	gb\|AC069426.9\| Homo sapiens 3 BAC RP11-200O17 (Roswell Park Canc...	42	1.5
10	gb\|AC137849.11\| Mus musculus chromosome 1, clone RP24-124J24, co...	40	6.0
11	gb\|CY003699.1\| Influenza A virus (A/New York/489/2003(H1N2)) seg...	40	6.0
12	gb\|CY003427.1\| Influenza A virus (A/New York/407/2002(H3N2)) seg...	40	6.0
13	gb\|AC100531.15\| Mus musculus chromosome 1, clone RP23-147I4, com...	40	6.0
14	gb\|AC142351.1\| Pan troglodytes BAC clone RP43-21J15 from 7, comp...	40	6.0
15	gb\|CY001683.1\| Influenza A virus (A/New York/78/2002(H1N2)) segm...	40	6.0
16	emb\|AL365203.19\| Human DNA sequence from clone RP11-479G22 on ch...	40	6.0
17	gb\|CY010719.1\| Influenza A virus (A/New York/631/1996(H3N2)) seg...	40	6.0
18	gb\|AC103949.6\| Homo sapiens chromosome 18, clone RP11-671P2, com...	40	6.0
19	gb\|AC026839.7\| Homo sapiens chromosome 5, clone RP11-186B13, com...	40	6.0
20	gb\|CY001739.1\| Influenza A virus (A/New York/276/2002(H3N2)) seg...	40	6.0
21	gb\|AE016818.1\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	6.0
22	gb\|AC160394.2\| Mus musculus BAC clone RP23-116C19 from chromosom...	40	6.0
23	emb\|BX934130.2\| Gallus gallus finished cDNA, clone ChEST267k10	40	6.0
24	gb\|AC108022.3\| Homo sapiens BAC clone RP11-9D8 from 4, complete ...	40	6.0
25	dbj\|AP000040.1\| Homo sapiens genomic DNA, chromosome 21q22.1, se...	40	6.0
26	gb\|CY000548.1\| Influenza A virus (A/New York/115/2002(H3N2)) seg...	40	6.0
27	gb\|CY000340.1\| Influenza A virus (A/New York/135/2002(H3N2)) seg...	40	6.0
28	emb\|AL954212.1\| Pan troglodytes chromosome 22 clone RP43-043L10 ...	40	6.0
29	emb\|BX571671.3\| Zebrafish DNA sequence from clone DKEY-153O22 in...	40	6.0
30	ref\|NM_209992.1\| Eremothecium gossypii AEL222Cp (AEL222C), mRNA	40	6.0
31	emb\|BX322618.8\| Zebrafish DNA sequence from clone CH211-265G21 i...	40	6.0
32	dbj\|AP001715.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	6.0
33	gb\|CY003772.1\| Influenza A virus (A/New York/417/2002(H1N2)) seg...	40	6.0
34	gb\|AC122220.4\| Mus musculus BAC clone RP23-122B15 from 9, comple...	40	6.0
35	gb\|CY006398.1\| Influenza A virus (A/New York/487/2003(H1N2)) seg...	40	6.0
36	gb\|CY006390.1\| Influenza A virus (A/New York/481/2003(H1N2)) seg...	40	6.0
37	dbj\|AB056778.1\| Macaca fascicularis brain cDNA clone:QccE-21094,...	40	6.0
38	dbj\|AP000281.1\| Homo sapiens genomic DNA, chromosome 21q22.1, D2...	40	6.0
39	dbj\|AP000184.1\| Homo sapiens genomic DNA, chromosome 21q22.1, D2...	40	6.0
40	dbj\|AP000108.1\| Homo sapiens genomic DNA of 21q22.1, GART and AM...	40	6.0

>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA,
            complete cds
          Length = 2923

 Score =  345 bits (174), Expect = 8e-92
 Identities = 219/234 (93%)
 Strand = Plus / Minus

                                                                        
Query: 215  gaggttgattgagttgttatgctgctactggatgcttgatgatcccacgcccttcatcca 274
            ||||| |||||||||||||||| || ||||||||| |||||||||||||||||||||| |
Sbjct: 2923 gaggtcgattgagttgttatgccgcaactggatgcctgatgatcccacgcccttcatcga 2864

                                                                        
Query: 275  ggacaaagctgttgtcgttgaagtgagagctggagaagaagggcctcagatcgtagatct 334
            ||||||||||||||||  |||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 2863 ggacaaagctgttgtcactgaagtgagagctggagaagaacggcctcaggtcgtagatct 2804

                                                                        
Query: 335  catattcttgggccttgttcttcaggtcatccactttaacctcgacatgagtcaggcgtg 394
            ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 2803 catattcttgggccttgttcttcaggtcatccactttaacctcaacgtgagtcaggcgtg 2744

                                                                  
Query: 395  tggttgatcccgacacaatctcttcaaagtgcagcgcttccttgaccagggtgc 448
            |||||||||| ||||| || ||||||||||||||||| ||||||||||||||||
Sbjct: 2743 tggttgatccagacacgatttcttcaaagtgcagcgcctccttgaccagggtgc 2690

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>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene,
            exons 1 through 18 and complete sequence
          Length = 8809

 Score =  218 bits (110), Expect = 1e-53
 Identities = 162/178 (91%), Gaps = 1/178 (0%)
 Strand = Plus / Minus

                                                                        
Query: 6    gatggcgtcaggtgcatataacactgaattatgacatcaagaaggtacaaacatctctaa 65
            ||||||||||| | |||| ||||||||||||||| |||||||||||||| ||||||| ||
Sbjct: 8259 gatggcgtcagttccata-aacactgaattatgatatcaagaaggtacagacatctcgaa 8201

                                                                        
Query: 66   atgccactggaggcacaagggtttcagatagcaaacagtacaccaacaccagaattcccg 125
            ||||| ||| |||||||||||||||||||||||||||||||||||| | ||||| || | 
Sbjct: 8200 atgccgctgtaggcacaagggtttcagatagcaaacagtacaccaatatcagaactctca 8141

                                                                      
Query: 126  taaaacagacacgagcagtcattttgccaacttacactacaagtggacatttctagct 183
             ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8140 caaaacagacacaagcagtcattttgccgacttacactacaagtggacatttctagct 8083



 Score =  194 bits (98), Expect = 2e-46
 Identities = 128/138 (92%)
 Strand = Plus / Minus

                                                                        
Query: 212  gctgaggttgattgagttgttatgctgctactggatgcttgatgatcccacgcccttcat 271
            ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct: 8041 gctgatgttgattgagttgttatgctgcaactggatgcctgatgatcccacgcccttcgt 7982

                                                                        
Query: 272  ccaggacaaagctgttgtcgttgaagtgagagctggagaagaagggcctcagatcgtaga 331
            ||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||
Sbjct: 7981 ccaggacgaagctgttgtcgctgaagtgagagctggagaagaacggcctcaggtcgtaga 7922

                              
Query: 332  tctcatattcttgggcct 349
            |||| || ||||||||||
Sbjct: 7921 tctcgtactcttgggcct 7904



 Score =  163 bits (82), Expect = 6e-37
 Identities = 97/102 (95%)
 Strand = Plus / Minus

                                                                        
Query: 347  ccttgttcttcaggtcatccactttaacctcgacatgagtcaggcgtgtggttgatcccg 406
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 7796 ccttgttcttcaggtcatccactttaacctcgacatgagtcaggcgtgcggttgatccca 7737

                                                      
Query: 407  acacaatctcttcaaagtgcagcgcttccttgaccagggtgc 448
            |||| || ||||||||||||||||| ||||||||||||||||
Sbjct: 7736 acacgatttcttcaaagtgcagcgcctccttgaccagggtgc 7695



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 193  gctcttgaacaaagaggtagctg 215
            |||||||||||||||||||||||
Sbjct: 8085 gctcttgaacaaagaggtagctg 8063

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>dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N01, full
            insert sequence
          Length = 3214

 Score =  147 bits (74), Expect = 4e-32
 Identities = 167/198 (84%)
 Strand = Plus / Minus

                                                                        
Query: 251  tgatgatcccacgcccttcatccaggacaaagctgttgtcgttgaagtgagagctggaga 310
            |||||||||| |||||||| || ||||| ||| |||||||  ||||||| | ||||||||
Sbjct: 2949 tgatgatcccccgcccttcgtcgaggacgaagttgttgtccctgaagtgggcgctggaga 2890

                                                                        
Query: 311  agaagggcctcagatcgtagatctcatattcttgggccttgttcttcaggtcatccactt 370
            |||| || ||||| || ||||| || || || |||||||||||||||||||| || ||||
Sbjct: 2889 agaacggtctcaggtcatagatttcgtactcctgggccttgttcttcaggtcctctactt 2830

                                                                        
Query: 371  taacctcgacatgagtcaggcgtgtggttgatcccgacacaatctcttcaaagtgcagcg 430
            |||||||||  ||||||||||| || |||| ||| || || || ||||| ||||||||| 
Sbjct: 2829 taacctcgatgtgagtcaggcgcgtcgttggtcctgaaacgatttcttcgaagtgcagca 2770

                              
Query: 431  cttccttgaccagggtgc 448
            | ||||||||||||||||
Sbjct: 2769 catccttgaccagggtgc 2752

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>gb|AY109731.1| Zea mays CL9169_1 mRNA sequence
          Length = 623

 Score =  147 bits (74), Expect = 4e-32
 Identities = 173/206 (83%)
 Strand = Plus / Plus

                                                                       
Query: 243 tggatgcttgatgatcccacgcccttcatccaggacaaagctgttgtcgttgaagtgaga 302
           ||||||| ||||||||||||||||||||||||| |  |||| ||||||  |||||   | 
Sbjct: 178 tggatgcctgatgatcccacgcccttcatccagaaggaagccgttgtccctgaagcacgc 237

                                                                       
Query: 303 gctggagaagaagggcctcagatcgtagatctcatattcttgggccttgttcttcaggtc 362
           |||||||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 238 gctggagaagaacggcttcagatcgtagatctcgtattcttgggccttgttcctcaggtc 297

                                                                       
Query: 363 atccactttaacctcgacatgagtcaggcgtgtggttgatcccgacacaatctcttcaaa 422
            |||| ||| |||||||| ||||| || |||| || |||||| | ||  || ||||| ||
Sbjct: 298 ctccaatttgacctcgacgtgagtaagacgtgaggctgatcctgccatgatttcttcgaa 357

                                     
Query: 423 gtgcagcgcttccttgaccagggtgc 448
           |||||  || ||||||||||| ||||
Sbjct: 358 gtgcacggcgtccttgaccagtgtgc 383

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>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057E15,
              complete sequence
          Length = 149035

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                          
Query: 347    ccttgttcttcaggtcatccactttaacctcgacatgagtcaggcgtgtggttgatcccg 406
              |||||||||||||||| || |||||||||||||  ||||||||||| || |||| ||| |
Sbjct: 102584 ccttgttcttcaggtcctctactttaacctcgatgtgagtcaggcgcgtcgttggtcctg 102525

                                                        
Query: 407    acacaatctcttcaaagtgcagcgcttccttgaccagggtgc 448
              | || || ||||| ||||||||| | ||||||||||||||||
Sbjct: 102524 aaacgatttcttcgaagtgcagcacatccttgaccagggtgc 102483



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                          
Query: 251    tgatgatcccacgcccttcatccaggacaaagctgttgtcgttgaagtgagagctggaga 310
              |||||||||| |||||||| || ||||| ||| |||||||  ||||||| | ||||||||
Sbjct: 102793 tgatgatcccccgcccttcgtcgaggacgaagttgttgtccctgaagtgggcgctggaga 102734

                                                     
Query: 311    agaagggcctcagatcgtagatctcatattcttgggcct 349
              |||| || ||||| || ||||| || || || |||||||
Sbjct: 102733 agaacggtctcaggtcatagatttcgtactcctgggcct 102695

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                            
Query: 347      ccttgttcttcaggtcatccactttaacctcgacatgagtcaggcgtgtggttgatcccg 406
                |||||||||||||||| || |||||||||||||  ||||||||||| || |||| ||| |
Sbjct: 16461985 ccttgttcttcaggtcctctactttaacctcgatgtgagtcaggcgcgtcgttggtcctg 16461926

                                                          
Query: 407      acacaatctcttcaaagtgcagcgcttccttgaccagggtgc 448
                | || || ||||| ||||||||| | ||||||||||||||||
Sbjct: 16461925 aaacgatttcttcgaagtgcagcacatccttgaccagggtgc 16461884



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                            
Query: 251      tgatgatcccacgcccttcatccaggacaaagctgttgtcgttgaagtgagagctggaga 310
                |||||||||| |||||||| || ||||| ||| |||||||  ||||||| | ||||||||
Sbjct: 16462194 tgatgatcccccgcccttcgtcgaggacgaagttgttgtccctgaagtgggcgctggaga 16462135

                                                       
Query: 311      agaagggcctcagatcgtagatctcatattcttgggcct 349
                |||| || ||||| || ||||| || || || |||||||
Sbjct: 16462134 agaacggtctcaggtcatagatttcgtactcctgggcct 16462096

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                            
Query: 347      ccttgttcttcaggtcatccactttaacctcgacatgagtcaggcgtgtggttgatcccg 406
                |||||||||||||||| || |||||||||||||  ||||||||||| || |||| ||| |
Sbjct: 16552989 ccttgttcttcaggtcctctactttaacctcgatgtgagtcaggcgcgtcgttggtcctg 16552930

                                                          
Query: 407      acacaatctcttcaaagtgcagcgcttccttgaccagggtgc 448
                | || || ||||| ||||||||| | ||||||||||||||||
Sbjct: 16552929 aaacgatttcttcgaagtgcagcacatccttgaccagggtgc 16552888



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                            
Query: 251      tgatgatcccacgcccttcatccaggacaaagctgttgtcgttgaagtgagagctggaga 310
                |||||||||| |||||||| || ||||| ||| |||||||  ||||||| | ||||||||
Sbjct: 16553198 tgatgatcccccgcccttcgtcgaggacgaagttgttgtccctgaagtgggcgctggaga 16553139

                                                       
Query: 311      agaagggcctcagatcgtagatctcatattcttgggcct 349
                |||| || ||||| || ||||| || || || |||||||
Sbjct: 16553138 agaacggtctcaggtcatagatttcgtactcctgggcct 16553100

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>gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, complete sequence
          Length = 188853

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 203    aaagaggtagctgaggttgat 223
              |||||||||||||||||||||
Sbjct: 103298 aaagaggtagctgaggttgat 103318

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>gb|AC069426.9| Homo sapiens 3 BAC RP11-200O17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 128500

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 349   ttgttcttcaggtcatccactttaacctc 377
             ||||||||||||||| |||||| ||||||
Sbjct: 50709 ttgttcttcaggtcacccacttgaacctc 50737

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>gb|AC137849.11| Mus musculus chromosome 1, clone RP24-124J24, complete sequence
          Length = 178764

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   cttcatccaggacaaagctg 285
             ||||||||||||||||||||
Sbjct: 21112 cttcatccaggacaaagctg 21093

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>gb|CY003699.1| Influenza A virus (A/New York/489/2003(H1N2)) segment 5, complete
           sequence
          Length = 1530

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 322 agatcgtagatctcatattcttgg 345
           |||||| |||||||||||||||||
Sbjct: 777 agatcgaagatctcatattcttgg 800

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>gb|CY003427.1| Influenza A virus (A/New York/407/2002(H3N2)) segment 5, complete
           sequence
          Length = 1566

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 322 agatcgtagatctcatattcttgg 345
           |||||| |||||||||||||||||
Sbjct: 800 agatcgaagatctcatattcttgg 823

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>gb|AC100531.15| Mus musculus chromosome 1, clone RP23-147I4, complete sequence
          Length = 202351

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   cttcatccaggacaaagctg 285
             ||||||||||||||||||||
Sbjct: 33699 cttcatccaggacaaagctg 33718

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>gb|AC142351.1| Pan troglodytes BAC clone RP43-21J15 from 7, complete sequence
          Length = 159635

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     aaacatctctaaatgccact 73
              ||||||||||||||||||||
Sbjct: 104407 aaacatctctaaatgccact 104388

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>gb|CY001683.1| Influenza A virus (A/New York/78/2002(H1N2)) segment 5, complete
           sequence
          Length = 1566

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 322 agatcgtagatctcatattcttgg 345
           |||||| |||||||||||||||||
Sbjct: 800 agatcgaagatctcatattcttgg 823

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>emb|AL365203.19| Human DNA sequence from clone RP11-479G22 on chromosome 10 Contains the
             3' end of a novel gene (FLJ13031) (FLJ40349), the ITGB1
             gene for integrin beta 1 (fibronectin receptor beta
             polypeptide antigen CD29 includes MDF2 MSK12), an
             adenylate kinase 3 like 1 (AK3L1) pseudogene, a novel
             gene, the 5' end of a novel gene, a NADH dehydrogenase
             subunit 4L (ND4L) pseudogene, a pseudogene similar to part
             of integrin beta 2 (antigen CD18 (p95) lymphocyte
             function-associated antigen 1; macrophage antigen 1
             (mac-1) beta subunit) (ITGB2) and a CpG island, complete
             sequence
          Length = 197973

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    ggaggcacaagggtttcaga 93
             ||||||||||||||||||||
Sbjct: 92711 ggaggcacaagggtttcaga 92692

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>gb|CY010719.1| Influenza A virus (A/New York/631/1996(H3N2)) segment 5, complete
           sequence
          Length = 1522

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 322 agatcgtagatctcatattcttgg 345
           |||||| |||||||||||||||||
Sbjct: 777 agatcgaagatctcatattcttgg 800

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>gb|AC103949.6| Homo sapiens chromosome 18, clone RP11-671P2, complete sequence
          Length = 177301

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     aaacatctctaaatgccact 73
              ||||||||||||||||||||
Sbjct: 117250 aaacatctctaaatgccact 117231

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>gb|AC026839.7| Homo sapiens chromosome 5, clone RP11-186B13, complete sequence
          Length = 156721

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    aaacatctctaaatgccact 73
             ||||||||||||||||||||
Sbjct: 25257 aaacatctctaaatgccact 25276

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>gb|CY001739.1| Influenza A virus (A/New York/276/2002(H3N2)) segment 5, complete
           sequence
          Length = 1566

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 322 agatcgtagatctcatattcttgg 345
           |||||| |||||||||||||||||
Sbjct: 800 agatcgaagatctcatattcttgg 823

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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    gagctggagaagaagggcct 320
              ||||||||||||||||||||
Sbjct: 214396 gagctggagaagaagggcct 214377

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>gb|AC160394.2| Mus musculus BAC clone RP23-116C19 from chromosome 9, complete sequence
          Length = 201200

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 395   tggttgatcccgacacaatctctt 418
             ||||||||||||| ||||||||||
Sbjct: 24190 tggttgatcccgaaacaatctctt 24167

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>emb|BX934130.2| Gallus gallus finished cDNA, clone ChEST267k10
          Length = 1947

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 351  gttcttcaggtcatccactt 370
            ||||||||||||||||||||
Sbjct: 1258 gttcttcaggtcatccactt 1277

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>gb|AC108022.3| Homo sapiens BAC clone RP11-9D8 from 4, complete sequence
          Length = 162609

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    tcaggtgcatataacactga 32
             ||||||||||||||||||||
Sbjct: 18559 tcaggtgcatataacactga 18578

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>dbj|AP000040.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 11/28, complete
             sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   tgctgctactggatgcttga 253
             ||||||||||||||||||||
Sbjct: 14249 tgctgctactggatgcttga 14268

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>gb|CY000548.1| Influenza A virus (A/New York/115/2002(H3N2)) segment 5, complete
           sequence
          Length = 1566

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 322 agatcgtagatctcatattcttgg 345
           |||||| |||||||||||||||||
Sbjct: 800 agatcgaagatctcatattcttgg 823

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>gb|CY000340.1| Influenza A virus (A/New York/135/2002(H3N2)) segment 5, complete
           sequence
          Length = 1566

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 322 agatcgtagatctcatattcttgg 345
           |||||| |||||||||||||||||
Sbjct: 800 agatcgaagatctcatattcttgg 823

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>emb|AL954212.1| Pan troglodytes chromosome 22 clone RP43-043L10 map 22q22.11, complete
             sequence
          Length = 192328

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   tgctgctactggatgcttga 253
             ||||||||||||||||||||
Sbjct: 50412 tgctgctactggatgcttga 50431

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>emb|BX571671.3| Zebrafish DNA sequence from clone DKEY-153O22 in linkage group 20,
             complete sequence
          Length = 86323

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   cttcaggtcatccactttaa 373
             ||||||||||||||||||||
Sbjct: 16672 cttcaggtcatccactttaa 16691

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>ref|NM_209992.1| Eremothecium gossypii AEL222Cp (AEL222C), mRNA
          Length = 705

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 301 gagctggagaagaagggcct 320
           ||||||||||||||||||||
Sbjct: 46  gagctggagaagaagggcct 65

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>emb|BX322618.8| Zebrafish DNA sequence from clone CH211-265G21 in linkage group 20,
             complete sequence
          Length = 144211

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   cttcaggtcatccactttaa 373
             ||||||||||||||||||||
Sbjct: 71855 cttcaggtcatccactttaa 71836

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>dbj|AP001715.1| Homo sapiens genomic DNA, chromosome 21q, section 59/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    tgctgctactggatgcttga 253
              ||||||||||||||||||||
Sbjct: 179399 tgctgctactggatgcttga 179418

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>gb|CY003772.1| Influenza A virus (A/New York/417/2002(H1N2)) segment 5, complete
           sequence
          Length = 1541

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 322 agatcgtagatctcatattcttgg 345
           |||||| |||||||||||||||||
Sbjct: 788 agatcgaagatctcatattcttgg 811

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>gb|AC122220.4| Mus musculus BAC clone RP23-122B15 from 9, complete sequence
          Length = 188580

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 395   tggttgatcccgacacaatctctt 418
             ||||||||||||| ||||||||||
Sbjct: 22573 tggttgatcccgaaacaatctctt 22596

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>gb|CY006398.1| Influenza A virus (A/New York/487/2003(H1N2)) segment 5, complete
           sequence
          Length = 1508

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 322 agatcgtagatctcatattcttgg 345
           |||||| |||||||||||||||||
Sbjct: 755 agatcgaagatctcatattcttgg 778

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>gb|CY006390.1| Influenza A virus (A/New York/481/2003(H1N2)) segment 5, complete
           sequence
          Length = 1554

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 322 agatcgtagatctcatattcttgg 345
           |||||| |||||||||||||||||
Sbjct: 788 agatcgaagatctcatattcttgg 811

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>dbj|AB056778.1| Macaca fascicularis brain cDNA clone:QccE-21094, full insert
           sequence
          Length = 1550

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 gaacaaagaggtagctgagg 218
           ||||||||||||||||||||
Sbjct: 727 gaacaaagaggtagctgagg 746

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>dbj|AP000281.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:T1588, complete sequence
          Length = 66129

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   tgctgctactggatgcttga 253
             ||||||||||||||||||||
Sbjct: 58308 tgctgctactggatgcttga 58327

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>dbj|AP000184.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             Q78C10-f32E9, segment 11/21, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   tgctgctactggatgcttga 253
             ||||||||||||||||||||
Sbjct: 20225 tgctgctactggatgcttga 20244

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>dbj|AP000108.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             Q78C10-149C3 region, segment 11/20
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   tgctgctactggatgcttga 253
             ||||||||||||||||||||
Sbjct: 20225 tgctgctactggatgcttga 20244


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,634,243
Number of Sequences: 3902068
Number of extensions: 3634243
Number of successful extensions: 80814
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80706
Number of HSP's gapped (non-prelim): 107
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result