ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_954242.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.1
2ref|XM_328950.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.1
3gb|CP000107.1| Ehrlichia canis str. Jake, complete genome 40 6.1
4gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C... 40 6.1

>ref|XM_954242.1| Neurospora crassa OR74A hypothetical protein (NCU08245.1) partial
           mRNA
          Length = 1395

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 tgaaccaactcattctgccc 388
           ||||||||||||||||||||
Sbjct: 180 tgaaccaactcattctgccc 199



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>ref|XM_328950.1| Neurospora crassa OR74A hypothetical protein (NCU08245.1) partial
           mRNA
          Length = 1395

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 tgaaccaactcattctgccc 388
           ||||||||||||||||||||
Sbjct: 180 tgaaccaactcattctgccc 199



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>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome
          Length = 1315030

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 270     tcctctaccaatatgtatac 289
               ||||||||||||||||||||
Sbjct: 1226685 tcctctaccaatatgtatac 1226704



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>gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C3 genomic sequence, complete
             sequence
          Length = 90132

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    cataatgtttcactacaaac 30
             ||||||||||||||||||||
Sbjct: 52753 cataatgtttcactacaaac 52734


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,043,731
Number of Sequences: 3902068
Number of extensions: 3043731
Number of successful extensions: 45295
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45287
Number of HSP's gapped (non-prelim): 8
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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