ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02b04 |
|---|---|
| Clone Library Name | barley_pub |
>TROP_HUMAN (Q12816) Trophinin (MAGE-D3 antigen)| Length = 1387 Score = 34.3 bits (77), Expect = 0.17 Identities = 19/48 (39%), Positives = 28/48 (58%) Frame = +3 Query: 306 GVKPSYSASLTSVISMSSGALLSGTHSGSTVSAPPSGCSSDPSSLFRS 449 GV PS SAS ++ S+S G LS + S S+ ++ GC+ S+ F S Sbjct: 716 GVAPSTSASFSNTASISFGGTLSTSSSFSSAASISFGCAHSTSTSFSS 763
>PPZ_SCHPO (P78968) Serine/threonine-protein phosphatase PP-Z (EC 3.1.3.16)| Length = 515 Score = 33.9 bits (76), Expect = 0.22 Identities = 24/87 (27%), Positives = 37/87 (42%) Frame = +3 Query: 198 NQGMATTLPL*QPSTRKPGSGALMHHHNQT*HASSHGVKPSYSASLTSVISMSSGALLSG 377 +Q + P QP+ P + A HHH+ + +SS+ V P+ S TS + S + Sbjct: 96 SQSPTSPHPSNQPAMLSPSTAASQHHHHHS-SSSSYAVSPTSPTSPTSSGPIGSNFDSAS 154 Query: 378 THSGSTVSAPPSGCSSDPSSLFRSGFP 458 H+G G P+S S P Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDP 181
>NP1L3_HUMAN (Q99457) Nucleosome assembly protein 1-like 3| Length = 506 Score = 31.6 bits (70), Expect = 1.1 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = +3 Query: 297 SSHGVKPSYSASLTSVISMSSGALLSGTHSGSTVSAPPSGCSSDPSSLFR 446 S G + S+S +S SS + SG+ SGS S+ SG +S S L+R Sbjct: 27 SDSGEESDSSSSSSSTSDSSSSSSTSGSSSGSGSSSSSSGSTSSRSRLYR 76
>TAB3_HUMAN (Q8N5C8) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 3 (TAK1-binding protein 3) (NF-kappa-B-activating protein 1) Length = 712 Score = 30.8 bits (68), Expect = 1.9 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 14/111 (12%) Frame = +3 Query: 183 NYYRKNQGMATTLPL*QPSTRKPGSGALMHHHNQT*HASSHG-VKPSYSASLTSVISM-- 353 N +N+ + L + PS+ PG GA ++ H+SS G + P ++A + + Sbjct: 64 NRMNRNRLLHINLGIHSPSSYHPGDGAQLNGGRTLVHSSSDGHIDPQHAAGKQLICLVQE 123 Query: 354 --SSGALLSGT---------HSGSTVSAPPSGCSSDPSSLFRSGFPSSIFG 473 S+ A+++ T + + PPS PSS+ PS++ G Sbjct: 124 PHSAPAVVAATPNYNPFFMNEQNRSAATPPSQPPQQPSSMQTGMNPSAMQG 174
>TAB3_MOUSE (Q571K4) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 3 (TAK1-binding protein 3) Length = 716 Score = 30.4 bits (67), Expect = 2.4 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 14/111 (12%) Frame = +3 Query: 183 NYYRKNQGMATTLPL*QPSTRKPGSGALMHHHNQT*HASSHG-VKPSYSASLTSVISM-- 353 N +N+ + L + PS+ PG GA ++ H+SS G + P ++A + + Sbjct: 64 NRMNRNRLLHINLGIHSPSSYHPGDGAHLNGGRTLVHSSSDGHIDPQHTAGKQLICLVQE 123 Query: 354 --SSGALLSGT---------HSGSTVSAPPSGCSSDPSSLFRSGFPSSIFG 473 S+ A+++ T + + PPS PSS+ PS++ G Sbjct: 124 PHSAPAVVAATPNYNPFFMNEQNRSAATPPSQPPQQPSSMQTGMNPSAMQG 174
>ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 protein)| Length = 892 Score = 30.4 bits (67), Expect = 2.4 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +3 Query: 291 HASSHGVKPSYSASLTSVISMSSGALLSGTHSGSTVSAPPSGCSSDPSS 437 H ++ +P+ S ++ V SM S + S + S ST PSG SS PSS Sbjct: 621 HGTTLNAQPAASGAMDPVCSMQSRQVSSSSSSPST----PSGLSSVPSS 665
>VILI2_ARATH (O81644) Villin-2| Length = 976 Score = 30.4 bits (67), Expect = 2.4 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Frame = -1 Query: 466 IDDGKPDLKSDDGS------DEQPDGGAETVDPECVPESKAPEDMDITDVK 332 +DDGK D +SD G+ P G D + VPES P+ ITD K Sbjct: 211 VDDGKLDTESDSGAFWVLFGGFAPIGRKVANDDDIVPESTPPKLYCITDGK 261
>DEXT_STRDO (P39653) Dextranase precursor (EC 3.2.1.11)| (Alpha-1,6-glucan-6-glucanohydrolase) Length = 1337 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/42 (28%), Positives = 22/42 (52%) Frame = -1 Query: 472 PKIDDGKPDLKSDDGSDEQPDGGAETVDPECVPESKAPEDMD 347 P++D+ K ++ D G+D+ P+ G D + PE+ D Sbjct: 1091 PEVDETKSEVTPDSGTDKAPEAGQVDSDKAPTVKPSTPENND 1132
>PRY3_YEAST (P47033) Protein PRY3 (Pathogen related in Sc 3)| Length = 881 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/48 (39%), Positives = 28/48 (58%) Frame = +3 Query: 294 ASSHGVKPSYSASLTSVISMSSGALLSGTHSGSTVSAPPSGCSSDPSS 437 ASS V SY+ S ++V+S + S T + S+V+ S SSDP+S Sbjct: 246 ASSSSVTTSYATSSSTVVSSDA---TSSTTTTSSVATSSSTTSSDPTS 290
>SP96_DICDI (P14328) Spore coat protein SP96| Length = 600 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/49 (40%), Positives = 27/49 (55%) Frame = +3 Query: 318 SYSASLTSVISMSSGALLSGTHSGSTVSAPPSGCSSDPSSLFRSGFPSS 464 S S++++S S SS A S + S ++ S S SS PSS S PSS Sbjct: 441 SGSSAVSSSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPSS 489 Score = 29.3 bits (64), Expect = 5.4 Identities = 24/76 (31%), Positives = 38/76 (50%) Frame = +3 Query: 210 ATTLPL*QPSTRKPGSGALMHHHNQT*HASSHGVKPSYSASLTSVISMSSGALLSGTHSG 389 A++ P ++ P S A + + +SS PS SAS +S S S+ + + + S Sbjct: 456 ASSSPSSSAASSSPSSSAASSSPSSSAASSS----PSSSASSSSSPSSSASSSSAPSSSA 511 Query: 390 STVSAPPSGCSSDPSS 437 S+ SAP S SS +S Sbjct: 512 SSSSAPSSSASSSSAS 527
>RPGR_MOUSE (Q9R0X5) X-linked retinitis pigmentosa GTPase regulator (mRpgr)| Length = 1001 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -1 Query: 436 DDGSDEQPDGGAETVDPECVPESKAPEDMDITDVK 332 D +E+ +G E V+ +PE++ E +DITD K Sbjct: 843 DTVEEERKEGEKEIVEEGSIPETEGSETIDITDEK 877
>GATA2_CHICK (P23824) GATA-binding factor 2 (GATA-2) (Transcription factor| NF-E1B) Length = 466 Score = 29.6 bits (65), Expect = 4.1 Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 15/83 (18%) Frame = +3 Query: 270 HHHNQ---------T*HASSHG------VKPSYSASLTSVISMSSGALLSGTHSGSTVSA 404 HHHN H S+ G V P S S T+ +S + A SG+H Sbjct: 108 HHHNPWTVNPFTKTPLHPSAAGAPGAISVYPGSSTSSTASVSSLTPASHSGSHLFGFPPT 167 Query: 405 PPSGCSSDPSSLFRSGFPSSIFG 473 PP S DP+S + PSS G Sbjct: 168 PPKEVSPDPNST-SAASPSSSAG 189
>DP87_DICDI (Q04503) Prespore protein DP87 precursor| Length = 555 Score = 29.6 bits (65), Expect = 4.1 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = +3 Query: 294 ASSHGVKPSYSASLTSVISM-SSGALLSGTHSGSTVSAPPSGCSSDPSSLFRSGFPSS 464 +S+ PS SA+ ++ S SS A S S ++ SAP S SS PSS S SS Sbjct: 484 SSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAASS 541
>WDR43_MOUSE (Q6ZQL4) WD-repeat protein 43 (Fragment)| Length = 665 Score = 29.3 bits (64), Expect = 5.4 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -1 Query: 463 DDGKPDLKSDDGSDEQPDGGAETVDPECVPESKAPEDMDITDVKDAE 323 DD P+ SDD DE D +E E V E ED D+ D ++ E Sbjct: 595 DDEVPEKDSDDNWDEDEDKDSE--KDEGVDEDNEEEDEDMEDKEENE 639
>BYN_DROME (P55965) T-related protein (Trp) (Protein brachyenteron)| Length = 697 Score = 29.3 bits (64), Expect = 5.4 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +3 Query: 315 PSYSASLTSVISMSSGAL---LSGTHSGSTVSAPPSGCSSDPSSLFRSGFPS 461 PS + TS+ S S+G++ +S + G SAP +GC S SS +SGF S Sbjct: 377 PSAPQTPTSLHSTSTGSVSTSVSSSSGGGIGSAPSTGCFS--SSYAQSGFMS 426
>P3F2B_XENLA (P70030) POU domain, class 3, transcription factor 2-B| (Transcription factor POU3-B) (XLPOU3B) Length = 385 Score = 29.3 bits (64), Expect = 5.4 Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 1/56 (1%) Frame = +3 Query: 249 PGSGALMHHHN-QT*HASSHGVKPSYSASLTSVISMSSGALLSGTHSGSTVSAPPS 413 PGSG MHHH + H HG S T L G H S P S Sbjct: 154 PGSGQGMHHHGLRDSHDDHHGDHGHQQPSQTQQQQQQHSQLQGGHHDHSDEDTPTS 209
>EP84_HCMVA (P17151) Early phosphoprotein p84| Length = 684 Score = 29.3 bits (64), Expect = 5.4 Identities = 24/76 (31%), Positives = 34/76 (44%) Frame = +3 Query: 237 STRKPGSGALMHHHNQT*HASSHGVKPSYSASLTSVISMSSGALLSGTHSGSTVSAPPSG 416 S+ S + HHH+ H + +T V + + GALL G+ VS+P Sbjct: 316 SSSAVSSSSNNHHHHHHHHNA-----------VTDVAAGTDGALLLPIERGAVVSSP--- 361 Query: 417 CSSDPSSLFRSGFPSS 464 S+ PSSL PSS Sbjct: 362 SSTSPSSLLSLPRPSS 377
>CSPG5_CHICK (Q9DF69) Chondroitin sulfate proteoglycan 5 precursor (Acidic| leucine-rich EGF-like domain-containing brain protein) [Contains: Chondroitin sulfate proteoglycan 5, 38 kDa form; Chondroitin sulfate proteoglycan 5, 80 kDa form] Length = 594 Score = 29.3 bits (64), Expect = 5.4 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 463 DDGKPDLKSDDGSDEQPDGGAETVDPECVPESKAP 359 DD + +L+ D+ +E+ DGG E + P S AP Sbjct: 352 DDAEEELEEDEEEEEEEDGGLEDENGYRPPASAAP 386
>SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein)| Length = 1186 Score = 28.9 bits (63), Expect = 7.1 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = +3 Query: 243 RKPGSGALMHHHNQT*HASSHGVKPSYSASLTSVISMSSGALLSGTHSGSTV-SAPPSGC 419 RK GSG H + T +S+ + SAS T S +SGA + + S ST + S Sbjct: 1084 RKSGSG----HKSATVQSSTTDKTSTDSASSTDSTSSTSGASTTTSGSSSTSGGSSTSDA 1139 Query: 420 SSDPSSLFRS 449 SS SS+ RS Sbjct: 1140 SSTSSSVSRS 1149
>SRP40_YEAST (P32583) Suppressor protein SRP40| Length = 406 Score = 28.9 bits (63), Expect = 7.1 Identities = 22/57 (38%), Positives = 28/57 (49%) Frame = +3 Query: 294 ASSHGVKPSYSASLTSVISMSSGALLSGTHSGSTVSAPPSGCSSDPSSLFRSGFPSS 464 +SS S S+S +S S SSG S + S S+ S+ S SSD S S SS Sbjct: 28 SSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSS 84
>ATG1_YARLI (Q6C7U0) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)| (Autophagy-related protein 1) Length = 710 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +3 Query: 291 HASSHGVKPSYSASLTSVISMSSGALLSGTHSG--STVSAPPSGCSSDPS 434 H S +G + + +S+GA LSGT SG +T +PP ++ PS Sbjct: 461 HGSGNGSRNGSGNGSGNGARLSAGAALSGTSSGTSTTGKSPPVPATTTPS 510
>CDSN_PANTR (Q7YR44) Corneodesmosin precursor (S protein)| Length = 529 Score = 28.5 bits (62), Expect = 9.2 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = +3 Query: 246 KPGSGALMHHHNQT*HASSHGVKPSYSASLTSVISMSSGALLSGTHSGSTVSAPPSGCSS 425 KPG+G ++Q ++S G ++ + + S SS + SG+HSGS+ S S S Sbjct: 107 KPGTG-----YSQVSYSSGSGSSLQGASGSSQLGSSSSHSGSSGSHSGSSSSHSSSSSSF 161 Query: 426 D-PSSLFRSGFPSSI 467 SS F+ G S++ Sbjct: 162 QFSSSSFQVGNGSAL 176
>CDSN_HUMAN (Q15517) Corneodesmosin precursor (S protein)| Length = 529 Score = 28.5 bits (62), Expect = 9.2 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = +3 Query: 246 KPGSGALMHHHNQT*HASSHGVKPSYSASLTSVISMSSGALLSGTHSGSTVSAPPSGCSS 425 KPG+G ++Q ++S G ++ + + S SS + SG+HSGS+ S S S Sbjct: 107 KPGTG-----YSQVSYSSGSGSSLQGASGSSQLGSSSSHSGSSGSHSGSSSSHSSSSSSF 161 Query: 426 D-PSSLFRSGFPSSI 467 SS F+ G S++ Sbjct: 162 QFSSSSFQVGNGSAL 176
>SET_RAT (Q63945) Protein SET (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A)| (Template-activating factor I) (TAF-I) (Liver regeneration-related protein LRRGR00002) Length = 289 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = -1 Query: 475 IPKIDDGKPDLKSDDGSDEQPDGGAETVDPECVPESKAPEDMDITDVKDAE 323 +P +DD + + + DD DE+ + G E +D E E + ED D + ++ E Sbjct: 234 VPDMDDEEGEAEDDDDDDEEEE-GLEDIDEE-GDEDEGEEDDDEDEGEEGE 282
>SET_MOUSE (Q9EQU5) Protein SET (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A)| (Template-activating factor I) (TAF-I) Length = 289 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = -1 Query: 475 IPKIDDGKPDLKSDDGSDEQPDGGAETVDPECVPESKAPEDMDITDVKDAE 323 +P +DD + + + DD DE+ + G E +D E E + ED D + ++ E Sbjct: 234 VPDMDDEEGEAEDDDDDDEEEE-GLEDIDEE-GDEDEGEEDDDEDEGEEGE 282 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,446,130 Number of Sequences: 219361 Number of extensions: 1337148 Number of successful extensions: 4254 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3988 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4222 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
