ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450983.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
3dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
4dbj|AK073815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
5dbj|AK062110.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
6gb|AC147570.3| Homo sapiens BAC clone RP11-1176F21 from UL, comp... 44 0.41
7gb|AC004527.2|AC004527 Homo sapiens chromosome 21, Neurofibromat... 44 0.41
8dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 44 0.41
9gb|AY898799.1| Homo sapiens NF1-ch21 pseudogene, complete sequence 44 0.41
10gb|AY898798.1| Homo sapiens NF1-ch18 pseudogene, complete sequence 44 0.41
11dbj|AP001634.1| Homo sapiens genomic DNA, chromosome 21q11.1 clo... 44 0.41
12dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 44 0.41
13gb|AC008194.9| Drosophila melanogaster clone BACR49A05, complete... 42 1.6
14emb|BX897699.1| Bartonella henselae strain Houston-1, complete g... 42 1.6
15emb|AL669992.1|NCB19C19 Neurospora crassa DNA linkage group II B... 42 1.6
16gb|AE003511.4| Drosophila melanogaster chromosome X, section 63 ... 42 1.6
17gb|AC108440.8| Mus musculus chromosome 19, clone RP23-379H7, com... 42 1.6
18gb|AC113078.17| Mus musculus chromosome 18, clone RP23-287G21, c... 40 6.4
19gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, co... 40 6.4
20gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosom... 40 6.4
21gb|AC122476.4| Mus musculus BAC clone RP24-334L2 from chromosome... 40 6.4
22gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosom... 40 6.4
23gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome... 40 6.4
24emb|AL589908.4| Human DNA sequence from clone RP11-258M3 on chro... 40 6.4
25emb|AL512307.12| Human DNA sequence from clone RP11-285B6 on chr... 40 6.4
26emb|AL157713.10| Human DNA sequence from clone RP11-110J1 on chr... 40 6.4
27emb|AL121919.20|HSJ492J12 Human DNA sequence from clone RP3-492J... 40 6.4
28gb|AC124157.4| Equus caballus clone CH241-37P10, complete sequence 40 6.4
29gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, com... 40 6.4
30emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4,... 40 6.4
31gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, comple... 40 6.4
32gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, compl... 40 6.4
33dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 6.4
34gb|AC011835.8| Homo sapiens chromosome 8, clone RP11-143D15, com... 40 6.4
35gb|AC016065.14| Homo sapiens chromosome 8, clone RP11-115C21, co... 40 6.4
36gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosom... 40 6.4
37dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
38gb|AC109222.14| Mus musculus chromosome 18, clone RP23-251L6, co... 40 6.4
39emb|BX470215.5| Mouse DNA sequence from clone RP24-558L5 on chro... 40 6.4
40gb|AC130533.2| Mus musculus BAC clone RP23-211B19 from 8, comple... 40 6.4
41emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, ... 40 6.4
42gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, c... 40 6.4
43gb|DP000020.1| Equus caballus target 1 genomic scaffold 40 6.4
44emb|AL772387.13| Mouse DNA sequence from clone RP23-133B16 on ch... 40 6.4
45emb|AL772213.7| Mouse DNA sequence from clone RP23-104G16 on chr... 40 6.4 
>ref|XM_450983.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3192

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 410  atcaggctgctcgtctgatccatca 434
            |||||||||||||||||||||||||
Sbjct: 2713 atcaggctgctcgtctgatccatca 2689
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 410      atcaggctgctcgtctgatccatca 434
                |||||||||||||||||||||||||
Sbjct: 17965479 atcaggctgctcgtctgatccatca 17965455
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>dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1509_C06
          Length = 113436

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 410   atcaggctgctcgtctgatccatca 434
             |||||||||||||||||||||||||
Sbjct: 17133 atcaggctgctcgtctgatccatca 17109
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>dbj|AK073815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065D05, full
            insert sequence
          Length = 3191

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 410  atcaggctgctcgtctgatccatca 434
            |||||||||||||||||||||||||
Sbjct: 2712 atcaggctgctcgtctgatccatca 2688
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>dbj|AK062110.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B08, full
            insert sequence
          Length = 1884

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 410  atcaggctgctcgtctgatccatca 434
            |||||||||||||||||||||||||
Sbjct: 1403 atcaggctgctcgtctgatccatca 1379
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>gb|AC147570.3| Homo sapiens BAC clone RP11-1176F21 from UL, complete sequence
          Length = 191237

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 84   cacaccaaaaacaaactgatag 105
            ||||||||||||||||||||||
Sbjct: 2226 cacaccaaaaacaaactgatag 2247
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>gb|AC004527.2|AC004527 Homo sapiens chromosome 21, Neurofibromatosis 1 (NF1) related locus,
             complete sequence
          Length = 131971

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 84    cacaccaaaaacaaactgatag 105
             ||||||||||||||||||||||
Sbjct: 94121 cacaccaaaaacaaactgatag 94100
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>dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, section 4/105
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 84    cacaccaaaaacaaactgatag 105
             ||||||||||||||||||||||
Sbjct: 17742 cacaccaaaaacaaactgatag 17721
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>gb|AY898799.1| Homo sapiens NF1-ch21 pseudogene, complete sequence
          Length = 10837

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 84   cacaccaaaaacaaactgatag 105
            ||||||||||||||||||||||
Sbjct: 2583 cacaccaaaaacaaactgatag 2562
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>gb|AY898798.1| Homo sapiens NF1-ch18 pseudogene, complete sequence
          Length = 10834

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 84   cacaccaaaaacaaactgatag 105
            ||||||||||||||||||||||
Sbjct: 2577 cacaccaaaaacaaactgatag 2556
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>dbj|AP001634.1| Homo sapiens genomic DNA, chromosome 21q11.1 clone:B585O4, D21S290-LL56
             region, complete sequence
          Length = 71829

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 84    cacaccaaaaacaaactgatag 105
             ||||||||||||||||||||||
Sbjct: 33976 cacaccaaaaacaaactgatag 33955
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>dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681B3, complete
             sequence
          Length = 182424

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 84    cacaccaaaaacaaactgatag 105
             ||||||||||||||||||||||
Sbjct: 97775 cacaccaaaaacaaactgatag 97796
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>gb|AC008194.9| Drosophila melanogaster clone BACR49A05, complete sequence
          Length = 181437

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 17    tctcaaaacaaattagaattc 37
             |||||||||||||||||||||
Sbjct: 64814 tctcaaaacaaattagaattc 64794
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>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     atctcaaaacaaattagaatt 36
              |||||||||||||||||||||
Sbjct: 337876 atctcaaaacaaattagaatt 337856
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>emb|AL669992.1|NCB19C19 Neurospora crassa DNA linkage group II BAC clone B19C19
          Length = 61082

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 422   gtctgatccatcatcactctt 442
             |||||||||||||||||||||
Sbjct: 36394 gtctgatccatcatcactctt 36414
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>gb|AE003511.4| Drosophila melanogaster chromosome X, section 63 of 74 of the complete
             sequence
          Length = 297969

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 17    tctcaaaacaaattagaattc 37
             |||||||||||||||||||||
Sbjct: 53196 tctcaaaacaaattagaattc 53176
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>gb|AC108440.8| Mus musculus chromosome 19, clone RP23-379H7, complete sequence
          Length = 177196

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 427  atccatcatcactcttcaggt 447
            |||||||||||||||||||||
Sbjct: 9042 atccatcatcactcttcaggt 9022
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>gb|AC113078.17| Mus musculus chromosome 18, clone RP23-287G21, complete sequence
          Length = 195627

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 9    tcaaaatatctcaaaacaaa 28
            ||||||||||||||||||||
Sbjct: 7206 tcaaaatatctcaaaacaaa 7187
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>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence
          Length = 195273

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   caactctcccactatagcaa 233
             ||||||||||||||||||||
Sbjct: 84114 caactctcccactatagcaa 84095
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>gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosome y, complete sequence
          Length = 167384

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    caactctcccactatagcaa 233
              ||||||||||||||||||||
Sbjct: 104096 caactctcccactatagcaa 104115
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>gb|AC122476.4| Mus musculus BAC clone RP24-334L2 from chromosome 18, complete sequence
          Length = 200538

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      tcaaaatatctcaaaacaaa 28
              ||||||||||||||||||||
Sbjct: 157997 tcaaaatatctcaaaacaaa 157978
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>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence
          Length = 179668

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 215    aactctcccactatagcaaccatc 238
              |||||||||| |||||||||||||
Sbjct: 144936 aactctcccagtatagcaaccatc 144959
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>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence
          Length = 214405

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 215    aactctcccactatagcaaccatc 238
              |||||||||| |||||||||||||
Sbjct: 198796 aactctcccagtatagcaaccatc 198773
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>emb|AL589908.4| Human DNA sequence from clone RP11-258M3 on chromosome 6, complete
            sequence
          Length = 13135

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   tgccaacatcacaccaaaaa 94
            ||||||||||||||||||||
Sbjct: 2445 tgccaacatcacaccaaaaa 2464
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>emb|AL512307.12| Human DNA sequence from clone RP11-285B6 on chromosome 1 Contains part
             of the RGS7 gene for regulator of G-protein signalling 7,
             complete sequence
          Length = 182323

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aatcaaaatatctcaaaaca 26
             ||||||||||||||||||||
Sbjct: 89297 aatcaaaatatctcaaaaca 89278
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>emb|AL157713.10| Human DNA sequence from clone RP11-110J1 on chromosome 1q23.3-24.3
              Contains the ETV3 gene for ets variant gene 3, a cytochrome
              c somatic pseudogene (HCP2), a ets variant gene 3 (ETV3)
              pseudogene, a keratin 8 (KRT8) pseudogene, a smu-1
              suppressor of mec-8 and unc-52 homolog (C. elegans) (SMU1)
              pseudogene, the 5' end of the ARHGEF11 gene for Rho guanine
              nucleotide exchange factor (GEF) 11 and two CPG islands,
              complete sequence
          Length = 167292

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     aaatatctcaaaacaaatta 31
              ||||||||||||||||||||
Sbjct: 119073 aaatatctcaaaacaaatta 119092
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>emb|AL121919.20|HSJ492J12 Human DNA sequence from clone RP3-492J12 on chromosome 20 Contains the
             C20orf174 gene for chromosome 20 open reading frame 174
             and a CpG island, complete sequence
          Length = 129942

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   acaggaagaaccaaggaatg 209
             ||||||||||||||||||||
Sbjct: 95346 acaggaagaaccaaggaatg 95327
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>gb|AC124157.4| Equus caballus clone CH241-37P10, complete sequence
          Length = 193986

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   ggcaaaggaataggatagaa 184
             ||||||||||||||||||||
Sbjct: 95592 ggcaaaggaataggatagaa 95611
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>gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, complete sequence
          Length = 246033

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      aatcaaaatatctcaaaaca 26
              ||||||||||||||||||||
Sbjct: 183272 aatcaaaatatctcaaaaca 183253
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>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
              complete sequence
          Length = 173522

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     tcaaaacaaattagaattct 38
              ||||||||||||||||||||
Sbjct: 158800 tcaaaacaaattagaattct 158781
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>gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, complete sequence
          Length = 174158

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   ggcaaaggaataggatagaa 184
             ||||||||||||||||||||
Sbjct: 72880 ggcaaaggaataggatagaa 72861
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>gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, complete sequence
          Length = 195110

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    atgcatcatcataaccagac 286
              ||||||||||||||||||||
Sbjct: 143504 atgcatcatcataaccagac 143485
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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     tcatggcaaaggaataggat 180
               ||||||||||||||||||||
Sbjct: 1782058 tcatggcaaaggaataggat 1782077
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>gb|AC011835.8| Homo sapiens chromosome 8, clone RP11-143D15, complete sequence
          Length = 182151

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    atgcatcatcataaccagac 286
              ||||||||||||||||||||
Sbjct: 175085 atgcatcatcataaccagac 175104
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>gb|AC016065.14| Homo sapiens chromosome 8, clone RP11-115C21, complete sequence
          Length = 185463

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    atgcatcatcataaccagac 286
              ||||||||||||||||||||
Sbjct: 149691 atgcatcatcataaccagac 149710
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>gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosome 16, complete
             sequence
          Length = 180876

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   agaaccaaggaatggcaaca 215
             ||||||||||||||||||||
Sbjct: 66984 agaaccaaggaatggcaaca 66965
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 19       tcaaaacaaattagaattct 38
                ||||||||||||||||||||
Sbjct: 27728174 tcaaaacaaattagaattct 27728155
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>gb|AC109222.14| Mus musculus chromosome 18, clone RP23-251L6, complete sequence
          Length = 201310

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    aatcaaaatatctcaaaaca 26
            ||||||||||||||||||||
Sbjct: 7997 aatcaaaatatctcaaaaca 7978
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>emb|BX470215.5| Mouse DNA sequence from clone RP24-558L5 on chromosome X, complete
             sequence
          Length = 137502

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   caactctcccactatagcaa 233
             ||||||||||||||||||||
Sbjct: 24102 caactctcccactatagcaa 24083
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>gb|AC130533.2| Mus musculus BAC clone RP23-211B19 from 8, complete sequence
          Length = 203431

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   caactctcccactatagcaa 233
             ||||||||||||||||||||
Sbjct: 59775 caactctcccactatagcaa 59794
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>emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, complete sequence
          Length = 192649

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     aaaacaaattagaattctcc 40
              ||||||||||||||||||||
Sbjct: 111675 aaaacaaattagaattctcc 111694
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>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence
          Length = 140942

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   gacatgcttcctcgcatggt 308
             ||||||||||||||||||||
Sbjct: 62021 gacatgcttcctcgcatggt 62040
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>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    ggcaaaggaataggatagaa 184
              ||||||||||||||||||||
Sbjct: 928595 ggcaaaggaataggatagaa 928614
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>emb|AL772387.13| Mouse DNA sequence from clone RP23-133B16 on chromosome 2, complete
             sequence
          Length = 195412

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   caactctcccactatagcaa 233
             ||||||||||||||||||||
Sbjct: 19584 caactctcccactatagcaa 19603
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>emb|AL772213.7| Mouse DNA sequence from clone RP23-104G16 on chromosome 2, complete
             sequence
          Length = 218975

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 427   atccatcatcactcttcagg 446
             ||||||||||||||||||||
Sbjct: 47067 atccatcatcactcttcagg 47048


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,027,583
Number of Sequences: 3902068
Number of extensions: 4027583
Number of successful extensions: 81064
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80920
Number of HSP's gapped (non-prelim): 144
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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