ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ASPG1_BACSU (P26900) L-asparaginase (EC 3.5.1.1) (L-asparagine a... 29 3.1
2HEMH_YEAST (P16622) Ferrochelatase, mitochondrial precursor (EC ... 28 5.4
3BCSA_PSEFL (P58931) Cellulose synthase catalytic subunit [UDP-fo... 28 7.0
4EPN4_HUMAN (Q14677) Epsin-4 (Epsin-related protein) (EpsinR) (En... 27 9.1
5EPN4_MOUSE (Q99KN9) Epsin-4 (Epsin-related protein) (EpsinR) (En... 27 9.1
6OPSD_MYRBE (P79798) Rhodopsin (Fragment) 27 9.1

>ASPG1_BACSU (P26900) L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase)|
           (L-ASNase)
          Length = 329

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 150 TEKLVVTLTWSIGLDADIPPLPNLHRTPI 236
           TE +V  L W++G  +D+P +  +  TPI
Sbjct: 295 TEAIVPKLMWALGQSSDLPVVKRIMETPI 323



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>HEMH_YEAST (P16622) Ferrochelatase, mitochondrial precursor (EC 4.99.1.1)|
           (Protoheme ferro-lyase) (Heme synthetase)
          Length = 393

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 118 PMMLTHAHLYKLRNWLLH*HGQSDWTQTFRRCQIYIGPLSFLSN-T*IIQGHLTDMQIQQ 294
           P+  T  H+  L    L   G+S++   F+RC+   G  +F+     +++ HL   Q  Q
Sbjct: 305 PIAFTSDHIETLHEIDLGVIGESEYKDKFKRCESLNGNQTFIEGMADLVKSHL---QSNQ 361

Query: 295 EHSSPSP*DLA 327
            +S+  P D A
Sbjct: 362 LYSNQLPLDFA 372



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>BCSA_PSEFL (P58931) Cellulose synthase catalytic subunit [UDP-forming] (EC|
           2.4.1.12)
          Length = 739

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 310 SP*DLAGTCFFASVCALAILFIVK 381
           +P DL   C FA+VC LA+L + K
Sbjct: 55  APLDLYSQCLFAAVCFLAVLVLRK 78



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>EPN4_HUMAN (Q14677) Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin)|
           (Clathrin-interacting protein localized in the
           trans-Golgi region) (Clint)
          Length = 625

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 5   QHIHYYQTTTNASTQHVQT*HVSKGNNYVGMGTATKYT 118
           +HIH  Q T   +T+H +T + SK    + +G A  YT
Sbjct: 260 KHIHITQATETTTTRHKRTANPSK---TIDLGAAAHYT 294



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>EPN4_MOUSE (Q99KN9) Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin)|
          Length = 631

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 5   QHIHYYQTTTNASTQHVQT*HVSKGNNYVGMGTATKYT 118
           +HIH  Q T   +T+H +T + SK    + +G A  YT
Sbjct: 268 KHIHITQATETTTTRHKRTANPSK---TIDLGAAAHYT 302



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>OPSD_MYRBE (P79798) Rhodopsin (Fragment)|
          Length = 349

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 165 VTLTWSIGLDADIPPL 212
           VTLTW++GL   +PPL
Sbjct: 154 VTLTWAMGLACTVPPL 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,695,050
Number of Sequences: 219361
Number of extensions: 1242024
Number of successful extensions: 2579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2577
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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