>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15,
              complete sequence
          Length = 142289

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 311    tttcacctgctccaagcttct 331
              |||||||||||||||||||||
Sbjct: 130210 tttcacctgctccaagcttct 130190

>gb|AC138006.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0066O12, complete sequence
          Length = 22258

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 311   tttcacctgctccaagcttct 331
             |||||||||||||||||||||
Sbjct: 21608 tttcacctgctccaagcttct 21628

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 311     tttcacctgctccaagcttct 331
               |||||||||||||||||||||
Sbjct: 4478847 tttcacctgctccaagcttct 4478827

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 311     tttcacctgctccaagcttct 331
               |||||||||||||||||||||
Sbjct: 4487541 tttcacctgctccaagcttct 4487521

>gb|BC116614.1| Danio rerio opsin 4 (melanopsin), mRNA (cDNA clone MGC:136728
            IMAGE:7043557), complete cds
          Length = 3218

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  gggaaggctttgcttggagg 366
            ||||||||||||||||||||
Sbjct: 1594 gggaaggctttgcttggagg 1613

>emb|Z73102.1|CEB0035 Caenorhabditis elegans Cosmid B0035, complete sequence
          Length = 39483

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 162   gatgactgaatgaaattgtatagt 185
             ||||||||||||||||||| ||||
Sbjct: 22593 gatgactgaatgaaattgtgtagt 22570

>ref|NM_178289.2| Danio rerio opsin 4 (melanopsin) (opn4), mRNA
          Length = 1668

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  gggaaggctttgcttggagg 366
            ||||||||||||||||||||
Sbjct: 1507 gggaaggctttgcttggagg 1526

>emb|Z97344.2|ATFCA9 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9
          Length = 81835

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    tgcaaataaattacagatgt 53
             ||||||||||||||||||||
Sbjct: 79867 tgcaaataaattacagatgt 79886

>emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47
          Length = 198067

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    tgcaaataaattacagatgt 53
             ||||||||||||||||||||
Sbjct: 74879 tgcaaataaattacagatgt 74898

>emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 in linkage group 25,
             complete sequence
          Length = 136578

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   tgtatagtaatgtacagtgc 197
             ||||||||||||||||||||
Sbjct: 68728 tgtatagtaatgtacagtgc 68709

>gb|AC105123.4| Homo sapiens chromosome 15, clone RP11-94B17, complete sequence
          Length = 134569

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   cacccaccaaaagaaatccc 226
             ||||||||||||||||||||
Sbjct: 63819 cacccaccaaaagaaatccc 63838

>gb|AC091948.3| Homo sapiens chromosome 5 clone RP11-373N22, complete sequence
          Length = 172162

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    cctgcaaataaattacagat 51
             ||||||||||||||||||||
Sbjct: 20891 cctgcaaataaattacagat 20910

>gb|AC011346.5| Homo sapiens chromosome 5 clone CTC-295J13, complete sequence
          Length = 110077

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    cctgcaaataaattacagat 51
             ||||||||||||||||||||
Sbjct: 81917 cctgcaaataaattacagat 81936

>emb|BX323807.8| Zebrafish DNA sequence from clone DKEY-154P10 in linkage group 2,
              complete sequence
          Length = 194313

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 347    gggaaggctttgcttggagg 366
              ||||||||||||||||||||
Sbjct: 168120 gggaaggctttgcttggagg 168101

>gb|AC093533.2| Homo sapiens chromosome 5 clone RP11-46C20, complete sequence
          Length = 154814

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    atgtacgggaaggctttgct 360
              ||||||||||||||||||||
Sbjct: 116692 atgtacgggaaggctttgct 116673

>gb|AY078161.1| Danio rerio melanopsin mRNA, complete cds
          Length = 1668

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  gggaaggctttgcttggagg 366
            ||||||||||||||||||||
Sbjct: 1507 gggaaggctttgcttggagg 1526


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,408,916
Number of Sequences: 3902068
Number of extensions: 3408916
Number of successful extensions: 60983
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60912
Number of HSP's gapped (non-prelim): 71
length of query: 393
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 371
effective length of database: 17,147,199,772
effective search space: 6361611115412
effective search space used: 6361611115412
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)