Clone Name | rbastl02a06 |
---|---|
Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 38.5 bits (88), Expect = 0.009 Identities = 24/60 (40%), Positives = 31/60 (51%) Frame = -1 Query: 468 PCEGTGVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKEVAMRLAVRSDDPEVSDKI 289 PCE + V N SH L+GVY GG +LVR L+ V M++ VRS + D I Sbjct: 809 PCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALA--DGVTMQVTVRSKERTPVDVI 866
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = -1 Query: 468 PCEGTGVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLS-GPKEVAMRLAVRSDDPEVSDK 292 PCE + V H LSGV+ GG VL + + + +AM + ++S++P V+D Sbjct: 805 PCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNIIIKSNEPLVADL 864 Query: 291 I 289 + Sbjct: 865 V 865
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 36.6 bits (83), Expect = 0.033 Identities = 22/60 (36%), Positives = 31/60 (51%) Frame = -1 Query: 468 PCEGTGVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKEVAMRLAVRSDDPEVSDKI 289 PCE + V N SH L+G++ GG +LVR L+ V M++ VRS + D I Sbjct: 809 PCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALA--DGVTMQVTVRSKERTPVDVI 866
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 34.7 bits (78), Expect = 0.12 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = -1 Query: 468 PCEGTGVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKEVAMRLAVRSDD 310 PCE + V N +H LL+GV+ GG +LVR L V M++ RS + Sbjct: 812 PCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLL--DTVTMQVTARSSE 862
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 33.9 bits (76), Expect = 0.21 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -1 Query: 468 PCEGTGVVSSNARSHVCLLSGVYIGGVKVLVR 373 PCE + V N +H LL+GV+ GG +LVR Sbjct: 812 PCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>PHF15_HUMAN (Q9NQC1) PHD finger protein 15| Length = 576 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +3 Query: 3 SRHACISIHHNIFHLRQSMLKNQLCNERLSSS 98 ++HA + IFHL+ +++ LC LS+S Sbjct: 277 TKHAICKLQEQIFHLQMKLIEQDLCRAGLSTS 308
>RS5_IDILO (Q5QXW2) 30S ribosomal protein S5| Length = 166 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 12/63 (19%) Frame = -1 Query: 462 EGTGVVSSNARSHVCLLSGVY------------IGGVKVLVRLSFGLSGPKEVAMRLAVR 319 EGTG+++ A V +SGV+ I V+ ++ G+ P++VA + +R Sbjct: 101 EGTGIIAGGAMRAVLEVSGVHNVLSKAYGSTNPINVVRATIKALNGMKSPEQVAAKRGLR 160 Query: 318 SDD 310 D+ Sbjct: 161 VDE 163
>HN_PI3HW (P12565) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = +2 Query: 299 LTSGSSDLTASLIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 448 +T G D+ S +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGTITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)| Length = 1004 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/60 (25%), Positives = 24/60 (40%) Frame = +2 Query: 287 WILSLTSGSSDLTASLIATSLGPLSPNDNLTRTFTPPIYTPDSRHTCDLALLDTTPVPSH 466 W+ S+ + + L A + ++ + P+ DS T L D TP PSH Sbjct: 432 WLCSVVALQCSILKHLSAKQMPSHWDSEQTEKADIKPVIVTDSSVTTSLQTADKTPTPSH 491
>ERA_DEIRA (Q9RWM0) GTP-binding protein era homolog| Length = 311 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +2 Query: 308 GSSDLTASLIATSLGPLSPNDNLTRTFTPPIYTPDSRHTCDLALLDT 448 G S L + + T + P SP TR IYT D+R L +DT Sbjct: 29 GKSTLLNAFLGTKVAPTSPRPQTTRRGVRGIYTLDNR---QLIFVDT 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,016,906 Number of Sequences: 219361 Number of extensions: 1216354 Number of successful extensions: 3177 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3177 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)