Clone Name | rbastl02a04 |
---|---|
Clone Library Name | barley_pub |
>SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,| arginine/serine-rich 2-interacting protein) (SC35-interacting protein 1) (CTD-associated SR protein 11) (Splicing regulatory protein 129) (SRrp129) (NY-REN-40 antigen) Length = 1148 Score = 33.5 bits (75), Expect = 0.28 Identities = 20/60 (33%), Positives = 30/60 (50%) Frame = -2 Query: 461 WRQGNMSRDAFKMIVRKTVDKVSSSVPGNHIPKTPAKIRQYVQSSQRKVTKLVMGYVDKY 282 ++ +++++ +K IVRK VDKV S G + + KV LV YVDKY Sbjct: 1080 YQNKDITKEEYKEIVRKAVDKVCHSKSG--------------EVNSTKVANLVKAYVDKY 1125
>CP242_PIG (P79402) Cytochrome P450 2C42 (EC 1.14.14.1) (CYPIIC42) (Fragment)| Length = 327 Score = 31.6 bits (70), Expect = 1.1 Identities = 18/39 (46%), Positives = 23/39 (58%) Frame = -3 Query: 118 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVDISFPF 2 +GTT+L S TSV Y K P+P +F HF+D S F Sbjct: 220 KGTTILTSL--TSVLYDCKAFPNPEVFDPGHFLDESGNF 256
>RS17E_SULAC (Q4JAX5) 30S ribosomal protein S17e| Length = 82 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/60 (26%), Positives = 27/60 (45%) Frame = -2 Query: 452 GNMSRDAFKMIVRKTVDKVSSSVPGNHIPKTPAKIRQYVQSSQRKVTKLVMGYVDKYVKL 273 GN+ K + R+ DK + + +YV S +KV + GY+ +YVK+ Sbjct: 2 GNVYTKDIKRVARELYDKFKDQASDKY-DDNKKLVDEYVNVSSKKVKNRIAGYLTRYVKI 60
>CR1EA_BACTX (Q57458) Pesticidal crystal protein cry1Ea (Insecticidal| delta-endotoxin CryIE(a)) (Crystaline entomocidal protoxin) (133 kDa crystal protein) Length = 1171 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%) Frame = +3 Query: 33 TTNRTGLGSNLTEYETDV*THDS----NTVVPSVLTRIPSCKG 149 T R+ +N+T T V TH S NT+ P ++T+IP KG Sbjct: 430 TLTRSLYNTNITSLPTFVWTHHSATNTNTINPDIITQIPLVKG 472
>RS17E_SULSO (Q980K7) 30S ribosomal protein S17e| Length = 79 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/60 (26%), Positives = 28/60 (46%) Frame = -2 Query: 452 GNMSRDAFKMIVRKTVDKVSSSVPGNHIPKTPAKIRQYVQSSQRKVTKLVMGYVDKYVKL 273 GN+ K IV++ D+ + ++ IR YV +KV + GY+ +Y K+ Sbjct: 2 GNIYTKDIKRIVKEIYDRYKDEIKDDYNTNKQIVIR-YVDVKSKKVRNRIAGYLTRYYKI 60
>CP2CJ_HUMAN (P33261) Cytochrome P450 2C19 (EC 1.14.13.80) ((R)-limonene| 6-monooxygenase) (EC 1.14.13.48) ((S)-limonene 6-monooxygenase) (EC 1.14.13.49) ((S)-limonene 7-monooxygenase) (CYPIIC19) (P450-11A) (Mephenytoin 4-hydroxylase) (CYPIIC17) (P450-254C Length = 490 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -3 Query: 118 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVD 17 +GTT+L S TSV + K P+P +F +HF+D Sbjct: 383 KGTTILTSL--TSVLHDNKEFPNPEMFDPRHFLD 414
>SYA_LEGPA (Q5X4B7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 860 Score = 28.9 bits (63), Expect = 6.8 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Frame = -3 Query: 232 AVVEVVKNTDSGGKPCIVLLEHLFA*ESPLQEGILVSTEGT-TVLESCV*TSVSYSVKL- 59 A+ ++ +N D V+ +H+ + + +G+L S EG VL + +V + KL Sbjct: 255 AIAQLGQNIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGYVLRRIIRRAVRHGNKLG 314 Query: 58 LPSPVLF-VVKHFVDI 14 LPSP F +V+ +D+ Sbjct: 315 LPSPFFFKLVQPLIDV 330
>CP239_MOUSE (P56656) Cytochrome P450 2C39 (EC 1.14.14.1) (CYPIIC39)| Length = 490 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = -3 Query: 118 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVDISFPF 2 +GTTV+ S TSV + K P+P LF HF+D + F Sbjct: 383 KGTTVVTSL--TSVLHDSKEFPNPELFDPGHFLDANGNF 419 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,785,788 Number of Sequences: 219361 Number of extensions: 1085799 Number of successful extensions: 2678 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2648 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2677 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)