ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 52 0.002
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
3dbj|AK104920.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
4dbj|AK100167.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
5dbj|AK071455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
6dbj|AK067150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
7gb|AY106446.1| Zea mays PCO068675 mRNA sequence 52 0.002
8emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 52 0.002
9gb|AC146508.3| Pan troglodytes BAC clone RP43-172A15 from 7, com... 42 1.6
10gb|AC004833.1| Homo sapiens PAC clone RP4-547C10 from 7, complet... 42 1.6
11gb|AC135115.5| Mus musculus BAC clone RP24-251K13 from chromosom... 42 1.6
12gb|AC111014.6| Mus musculus BAC clone RP24-371P8 from chromosome... 42 1.6
13gb|AC060761.10| Mus musculus chromosome 17, clone RP23-218D19, c... 42 1.6
14gb|AC005390.1|AC005390 Homo sapiens chromosome 19, cosmid R31180... 42 1.6
15emb|AL592112.7| Mouse DNA sequence from clone RP23-87H12 on chro... 42 1.6
16gb|AC106017.11| Homo sapiens chromosome 17, clone RP11-744A16, c... 40 6.2
17emb|AL589789.7| Human DNA sequence from clone RP11-478P15 on chr... 40 6.2
18emb|AL136977.8| Human DNA sequence from clone RP11-230E14 on chr... 40 6.2
19gb|AC096542.2| Homo sapiens chromosome 1 clone RP11-332L18, comp... 40 6.2
20gb|AC144506.1| Homo sapiens chromosome 17, clone XXfos-800635C12... 40 6.2
21gb|AC139077.2| Homo sapiens chromosome 17, clone XXfos-88899C12,... 40 6.2
22gb|AC139138.2| Homo sapiens chromosome 17, clone XXfos-82524G9, ... 40 6.2
23gb|AC007952.15| Homo sapiens chromosome 17, clone RP11-160E2, co... 40 6.2
24emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 6.2
25gb|AC006502.2|AC006502 Homo sapiens, clone hRPK.36_A_1, complete... 40 6.2 
>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17,
             complete sequence
          Length = 159894

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Plus

                                                                         
Query: 222   cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 281
             |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 36907 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 36966

                                                  
Query: 282   agaaatatcag--ttcatggcgtcggtggcctgcacc 316
             | |||||||||  ||| |||   ||||||||||||||
Sbjct: 36967 a-aaatatcaggtttcgtggttccggtggcctgcacc 37002
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Plus

                                                                            
Query: 222      cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 281
                |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 34312504 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 34312563

                                                     
Query: 282      agaaatatcag--ttcatggcgtcggtggcctgcacc 316
                | |||||||||  ||| |||   ||||||||||||||
Sbjct: 34312564 a-aaatatcaggtttcgtggttccggtggcctgcacc 34312599
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>dbj|AK104920.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G04, full
            insert sequence
          Length = 1542

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 222  cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 281
            |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 1393 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 1334

                                                 
Query: 282  agaaatatcag--ttcatggcgtcggtggcctgcacc 316
            | |||||||||  ||| |||   ||||||||||||||
Sbjct: 1333 a-aaatatcaggtttcgtggttccggtggcctgcacc 1298
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>dbj|AK100167.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022F20, full
            insert sequence
          Length = 2445

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 222  cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 281
            |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 2158 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 2099

                                                 
Query: 282  agaaatatcag--ttcatggcgtcggtggcctgcacc 316
            | |||||||||  ||| |||   ||||||||||||||
Sbjct: 2098 a-aaatatcaggtttcgtggttccggtggcctgcacc 2063
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>dbj|AK071455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093B04, full
            insert sequence
          Length = 3262

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 222  cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 281
            |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 3041 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 2982

                                                 
Query: 282  agaaatatcag--ttcatggcgtcggtggcctgcacc 316
            | |||||||||  ||| |||   ||||||||||||||
Sbjct: 2981 a-aaatatcaggtttcgtggttccggtggcctgcacc 2946
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>dbj|AK067150.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096O18, full
            insert sequence
          Length = 1810

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 222  cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 281
            |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 1675 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 1616

                                                 
Query: 282  agaaatatcag--ttcatggcgtcggtggcctgcacc 316
            | |||||||||  ||| |||   ||||||||||||||
Sbjct: 1615 a-aaatatcaggtttcgtggttccggtggcctgcacc 1580
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>gb|AY106446.1| Zea mays PCO068675 mRNA sequence
          Length = 1067

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 65   aatcctcctgcattcaaattattgcagttc 94
            |||||||||||||||| |||||||||||||
Sbjct: 1032 aatcctcctgcattcagattattgcagttc 1003
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>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete
             sequence
          Length = 95419

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Plus

                                                                         
Query: 222   cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 281
             |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 84801 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 84860

                                                  
Query: 282   agaaatatcag--ttcatggcgtcggtggcctgcacc 316
             | |||||||||  ||| |||   ||||||||||||||
Sbjct: 84861 a-aaatatcaggtttcgtggttccggtggcctgcacc 84896
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>gb|AC146508.3| Pan troglodytes BAC clone RP43-172A15 from 7, complete sequence
          Length = 208067

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 167   caagagtcttggaagaattga 187
             |||||||||||||||||||||
Sbjct: 36323 caagagtcttggaagaattga 36343
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>gb|AC004833.1| Homo sapiens PAC clone RP4-547C10 from 7, complete sequence
          Length = 68890

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 167  caagagtcttggaagaattga 187
            |||||||||||||||||||||
Sbjct: 8882 caagagtcttggaagaattga 8902
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>gb|AC135115.5| Mus musculus BAC clone RP24-251K13 from chromosome 10, complete
             sequence
          Length = 178241

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 85    attgcagttcttcaaggaaag 105
             |||||||||||||||||||||
Sbjct: 20089 attgcagttcttcaaggaaag 20069
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>gb|AC111014.6| Mus musculus BAC clone RP24-371P8 from chromosome 10, complete sequence
          Length = 141953

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 85    attgcagttcttcaaggaaag 105
             |||||||||||||||||||||
Sbjct: 75612 attgcagttcttcaaggaaag 75632
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>gb|AC060761.10| Mus musculus chromosome 17, clone RP23-218D19, complete sequence
          Length = 228922

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 224    aggtacaaaccatccaggata 244
              |||||||||||||||||||||
Sbjct: 227275 aggtacaaaccatccaggata 227255
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>gb|AC005390.1|AC005390 Homo sapiens chromosome 19, cosmid R31180, complete sequence
          Length = 39470

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 414   gttgtgccgccgtgagcaagggtgc 438
             |||||||||||||||||| ||||||
Sbjct: 32808 gttgtgccgccgtgagcacgggtgc 32784
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>emb|AL592112.7| Mouse DNA sequence from clone RP23-87H12 on chromosome 17, complete
             sequence
          Length = 158307

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   aggtacaaaccatccaggata 244
             |||||||||||||||||||||
Sbjct: 97730 aggtacaaaccatccaggata 97710
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>gb|AC106017.11| Homo sapiens chromosome 17, clone RP11-744A16, complete sequence
          Length = 178625

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     ctcctgcattcaaattattg 88
              ||||||||||||||||||||
Sbjct: 100370 ctcctgcattcaaattattg 100351



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    ctcctgcattcaaattattg 88
             ||||||||||||||||||||
Sbjct: 57656 ctcctgcattcaaattattg 57675
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>emb|AL589789.7| Human DNA sequence from clone RP11-478P15 on chromosome 1, complete
              sequence
          Length = 180785

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     ttgcagttcttcaaggaaag 105
              ||||||||||||||||||||
Sbjct: 138955 ttgcagttcttcaaggaaag 138936
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>emb|AL136977.8| Human DNA sequence from clone RP11-230E14 on chromosome Xq22.1-22.3,
             complete sequence
          Length = 66377

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    atgtagcagcagcaaataaa 31
             ||||||||||||||||||||
Sbjct: 41098 atgtagcagcagcaaataaa 41117
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>gb|AC096542.2| Homo sapiens chromosome 1 clone RP11-332L18, complete sequence
          Length = 189411

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    aggaaagcgtacgtgcctgg 118
             ||||||||||||||||||||
Sbjct: 97598 aggaaagcgtacgtgcctgg 97579
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>gb|AC144506.1| Homo sapiens chromosome 17, clone XXfos-800635C12, complete sequence
          Length = 36963

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    ctcctgcattcaaattattg 88
             ||||||||||||||||||||
Sbjct: 34866 ctcctgcattcaaattattg 34885
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>gb|AC139077.2| Homo sapiens chromosome 17, clone XXfos-88899C12, complete sequence
          Length = 37411

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    ctcctgcattcaaattattg 88
             ||||||||||||||||||||
Sbjct: 33266 ctcctgcattcaaattattg 33285
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>gb|AC139138.2| Homo sapiens chromosome 17, clone XXfos-82524G9, complete sequence
          Length = 41839

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    ctcctgcattcaaattattg 88
             ||||||||||||||||||||
Sbjct: 20333 ctcctgcattcaaattattg 20352
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>gb|AC007952.15| Homo sapiens chromosome 17, clone RP11-160E2, complete sequence
          Length = 158103

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     ctcctgcattcaaattattg 88
              ||||||||||||||||||||
Sbjct: 148015 ctcctgcattcaaattattg 148034



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    ctcctgcattcaaattattg 88
             ||||||||||||||||||||
Sbjct: 64552 ctcctgcattcaaattattg 64533
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 295     catggcgtcggtggcctgcaccag 318
               |||||||| |||||||||||||||
Sbjct: 3874432 catggcgttggtggcctgcaccag 3874455
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>gb|AC006502.2|AC006502 Homo sapiens, clone hRPK.36_A_1, complete sequence
          Length = 156736

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    ttgcagttcttcaaggaaag 105
             ||||||||||||||||||||
Sbjct: 17716 ttgcagttcttcaaggaaag 17735


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,026,673
Number of Sequences: 3902068
Number of extensions: 3026673
Number of successful extensions: 54724
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 54673
Number of HSP's gapped (non-prelim): 63
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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