ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl02a02 |
|---|---|
| Clone Library Name | barley_pub |
>S6A18_HUMAN (Q96N87) Sodium- and chloride-dependent transporter XTRP2 (Solute| carrier family 6 member 18) Length = 628 Score = 32.7 bits (73), Expect = 0.50 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = -2 Query: 293 RPNFIQTSAEGSWILFVWYN------AYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLST 132 R F++ S + + WY A I ++W +IC+AA W + + I+ + T Sbjct: 145 RTGFVEECQGSSAVSYFWYRQTLNITADINDSGSIQWWLLICLAASWAVVYMCVIRGIET 204 Query: 131 ENHVVW 114 V++ Sbjct: 205 TGKVIY 210
>S6A19_PONPY (Q5R6J1) Sodium-dependent neutral amino acid transporter B(0)| (System B(0) neutral amino acid transporter) (B(0)AT1) (Solute carrier family 6 member 19) Length = 634 Score = 32.0 bits (71), Expect = 0.85 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Frame = -2 Query: 284 FIQTSAEGSWILFVWY------NAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 123 ++ A S + + WY + I ++W ++C+A W+ L + I+ + T Sbjct: 162 YVDECARSSPVDYFWYRETLNISTSISDSGSIQWRMLLCLACAWSVLYMCTIRGIETTGK 221 Query: 122 VVWL 111 VV++ Sbjct: 222 VVYI 225
>S6A18_RAT (Q62687) Sodium- and chloride-dependent transporter XTRP2 (Solute| carrier family 6 member 18) (Renal osmotic stress-induced Na-Cl organic solute cotransporter) (ROSIT) Length = 615 Score = 31.6 bits (70), Expect = 1.1 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = -2 Query: 293 RPNFIQTSAEGSWILFVWYN------AYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLST 132 R F+Q + + WY + I + ++W +C+ A WT++ + I+ + + Sbjct: 144 RTGFVQECQSSGTVSYFWYRQTLNITSDISNTGTIQWKLFLCLVACWTTVYLCVIRGIES 203 Query: 131 ENHVVW 114 V++ Sbjct: 204 TGKVIY 209
>S6A19_MOUSE (Q9D687) Sodium-dependent neutral amino acid transporter B(0)| (System B(0) neutral amino acid transporter) (B(0)AT1) (Solute carrier family 6 member 19) Length = 634 Score = 30.4 bits (67), Expect = 2.5 Identities = 12/64 (18%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Frame = -2 Query: 284 FIQTSAEGSWILFVWY------NAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 123 +++ A+ S + + WY + I ++W ++C+ W+ L + I+ + T Sbjct: 162 YVEECAKSSSVDYFWYRETLNISTSISDSGSIQWWILLCLTCAWSVLYVCIIRGIETTGK 221 Query: 122 VVWL 111 V++ Sbjct: 222 AVYI 225
>S6A19_HUMAN (Q695T7) Sodium-dependent neutral amino acid transporter B(0)| (System B(0) neutral amino acid transporter) (B(0)AT1) (Solute carrier family 6 member 19) Length = 634 Score = 30.4 bits (67), Expect = 2.5 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Frame = -2 Query: 284 FIQTSAEGSWILFVWY------NAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 123 ++ A S + + WY + I ++W ++C+A W+ L + I+ + T Sbjct: 162 YVDECARSSPVDYFWYRETLNISTSISDSGSIQWWMLLCLACAWSVLYMCTIRGIETTGK 221 Query: 122 VVWL 111 V++ Sbjct: 222 AVYI 225
>S6A18_MOUSE (O88576) Sodium- and chloride-dependent transporter XTRP2 (Solute| carrier family 6 member 18) Length = 615 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = -2 Query: 293 RPNFIQTSAEGSWILFVWYN------AYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLST 132 R F+Q + + WY + I + ++W +C+ A W+++ + I+ + + Sbjct: 144 RTGFVQECQSSGTVSYFWYRQTLNITSDISNTGTIQWKLFLCLVACWSTVYLCVIRGIES 203 Query: 131 ENHVVW 114 V++ Sbjct: 204 TGKVIY 209
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 297 PSRIQHHQLQSMTALAAWQPQQYQSCNH 380 PS +QHHQ Q+ AL PQQ + H Sbjct: 1167 PSPVQHHQHQAAQALHLASPQQQSAIYH 1194
>REC12_SCHPO (P40384) Meiotic recombination protein rec12| Length = 345 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 261 SLSRGLDKIGTKPSRIQHHQLQSMTALAAW 350 +L G TKP I HH++ S+T+ A W Sbjct: 145 ALENGTVITATKPLLISHHRISSITSTAKW 174
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 297 PSRIQHHQLQSMTALAAWQPQQYQSCNH 380 PS +QHHQ Q+ AL PQQ + H Sbjct: 1141 PSPVQHHQHQAAQALHLASPQQQSAIYH 1168
>SERC_MYCTU (P63514) Putative phosphoserine aminotransferase (EC 2.6.1.52)| (PSAT) Length = 376 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +3 Query: 234 IVPNKQDPTSLSRGLDKIGTKPSRIQHHQLQSMTALAA 347 + P+ + PT++ + G+ PS+++ QLQ++T AA Sbjct: 5 LTPHLEIPTAIKPRDGRFGSGPSKVRLEQLQTLTTTAA 42
>SERC_MYCBO (P63515) Putative phosphoserine aminotransferase (EC 2.6.1.52)| (PSAT) Length = 376 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +3 Query: 234 IVPNKQDPTSLSRGLDKIGTKPSRIQHHQLQSMTALAA 347 + P+ + PT++ + G+ PS+++ QLQ++T AA Sbjct: 5 LTPHLEIPTAIKPRDGRFGSGPSKVRLEQLQTLTTTAA 42
>DUS_AZOBR (P45672) Probable tRNA-dihydrouridine synthase (EC 1.-.-.-)| Length = 328 Score = 28.9 bits (63), Expect = 7.2 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -1 Query: 411 PTRRRLAIHVYGCNSDI-AEAAKLQEQSWTAIDDV 310 P + +A+ + GC D+ AEAAKL E AI D+ Sbjct: 64 PEQFPMAVQLAGCEPDVMAEAAKLNEDRGAAIIDI 98
>ADR1_MOUSE (Q91VH1) Adiponectin receptor protein 1| Length = 375 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/47 (25%), Positives = 28/47 (59%) Frame = -2 Query: 263 GSWILFVWYNAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 123 GS++ +++Y+ Y P+L +L I+CV + +++ + + +T H Sbjct: 218 GSFVPWLYYSFYCSPQPRLIYLSIVCVLGI-SAIIVAQWDRFATPKH 263
>ADR1_HUMAN (Q96A54) Adiponectin receptor protein 1 (Progestin and adipoQ| receptor family member I) Length = 375 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/47 (25%), Positives = 28/47 (59%) Frame = -2 Query: 263 GSWILFVWYNAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 123 GS++ +++Y+ Y P+L +L I+CV + +++ + + +T H Sbjct: 218 GSFVPWLYYSFYCSPQPRLIYLSIVCVLGI-SAIIVAQWDRFATPKH 263 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,016,485 Number of Sequences: 219361 Number of extensions: 1565497 Number of successful extensions: 3876 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3789 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3875 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
