>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  170 bits (86), Expect = 3e-39
 Identities = 186/218 (85%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                            
Query: 261      tccctcagcagaggtttggataaaattgggacgaaaccttcaaggattcaacatcatcaa 320
                |||||||||||||| | | ||||||||| || ||    ||||||||||  ||||||||||
Sbjct: 12443028 tccctcagcagaggctcgaataaaattgagatgattttttcaaggatttgacatcatcaa 12442969

                                                                            
Query: 321      ttgcagtccatgactgctcttgcagcttggcagcctcagcaatatcagagttgcaaccat 380
                ||| | |||||||||||||||  |||||||||||||||||||| || |||||||| ||||
Sbjct: 12442968 ttgtaatccatgactgctcttttagcttggcagcctcagcaatgtctgagttgcagccat 12442909

                                                                            
Query: 381      acacatggattgccaatcgtctacgtgttggagaagatgatcttatgtaggtattgtacc 440
                ||||||||||||| |||||||| ||  | ||||| |||| | | ||||| ||||||||||
Sbjct: 12442908 acacatggattgctaatcgtctgcgcttgggagatgatggtttaatgtaagtattgtacc 12442849

                                                      
Query: 441      aactgatgacgtcctccttcc-cactgtccttagctct 477
                ||||||| || ||||||||||  |||||||||||||||
Sbjct: 12442848 aactgattacatcctccttccgaactgtccttagctct 12442811

>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14,
              complete sequence
          Length = 132560

 Score =  170 bits (86), Expect = 3e-39
 Identities = 186/218 (85%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                          
Query: 261    tccctcagcagaggtttggataaaattgggacgaaaccttcaaggattcaacatcatcaa 320
              |||||||||||||| | | ||||||||| || ||    ||||||||||  ||||||||||
Sbjct: 100710 tccctcagcagaggctcgaataaaattgagatgattttttcaaggatttgacatcatcaa 100651

                                                                          
Query: 321    ttgcagtccatgactgctcttgcagcttggcagcctcagcaatatcagagttgcaaccat 380
              ||| | |||||||||||||||  |||||||||||||||||||| || |||||||| ||||
Sbjct: 100650 ttgtaatccatgactgctcttttagcttggcagcctcagcaatgtctgagttgcagccat 100591

                                                                          
Query: 381    acacatggattgccaatcgtctacgtgttggagaagatgatcttatgtaggtattgtacc 440
              ||||||||||||| |||||||| ||  | ||||| |||| | | ||||| ||||||||||
Sbjct: 100590 acacatggattgctaatcgtctgcgcttgggagatgatggtttaatgtaagtattgtacc 100531

                                                    
Query: 441    aactgatgacgtcctccttcc-cactgtccttagctct 477
              ||||||| || ||||||||||  |||||||||||||||
Sbjct: 100530 aactgattacatcctccttccgaactgtccttagctct 100493

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  170 bits (86), Expect = 3e-39
 Identities = 186/218 (85%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                            
Query: 261      tccctcagcagaggtttggataaaattgggacgaaaccttcaaggattcaacatcatcaa 320
                |||||||||||||| | | ||||||||| || ||    ||||||||||  ||||||||||
Sbjct: 12439791 tccctcagcagaggctcgaataaaattgagatgattttttcaaggatttgacatcatcaa 12439732

                                                                            
Query: 321      ttgcagtccatgactgctcttgcagcttggcagcctcagcaatatcagagttgcaaccat 380
                ||| | |||||||||||||||  |||||||||||||||||||| || |||||||| ||||
Sbjct: 12439731 ttgtaatccatgactgctcttttagcttggcagcctcagcaatgtctgagttgcagccat 12439672

                                                                            
Query: 381      acacatggattgccaatcgtctacgtgttggagaagatgatcttatgtaggtattgtacc 440
                ||||||||||||| |||||||| ||  | ||||| |||| | | ||||| ||||||||||
Sbjct: 12439671 acacatggattgctaatcgtctgcgcttgggagatgatggtttaatgtaagtattgtacc 12439612

                                                      
Query: 441      aactgatgacgtcctccttcc-cactgtccttagctct 477
                ||||||| || ||||||||||  |||||||||||||||
Sbjct: 12439611 aactgattacatcctccttccgaactgtccttagctct 12439574

>dbj|AK068503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153C08, full
            insert sequence
          Length = 3677

 Score =  170 bits (86), Expect = 3e-39
 Identities = 186/218 (85%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                        
Query: 261  tccctcagcagaggtttggataaaattgggacgaaaccttcaaggattcaacatcatcaa 320
            |||||||||||||| | | ||||||||| || ||    ||||||||||  ||||||||||
Sbjct: 3226 tccctcagcagaggctcgaataaaattgagatgattttttcaaggatttgacatcatcaa 3167

                                                                        
Query: 321  ttgcagtccatgactgctcttgcagcttggcagcctcagcaatatcagagttgcaaccat 380
            ||| | |||||||||||||||  |||||||||||||||||||| || |||||||| ||||
Sbjct: 3166 ttgtaatccatgactgctcttttagcttggcagcctcagcaatgtctgagttgcagccat 3107

                                                                        
Query: 381  acacatggattgccaatcgtctacgtgttggagaagatgatcttatgtaggtattgtacc 440
            ||||||||||||| |||||||| ||  | ||||| |||| | | ||||| ||||||||||
Sbjct: 3106 acacatggattgctaatcgtctgcgcttgggagatgatggtttaatgtaagtattgtacc 3047

                                                  
Query: 441  aactgatgacgtcctccttcc-cactgtccttagctct 477
            ||||||| || ||||||||||  |||||||||||||||
Sbjct: 3046 aactgattacatcctccttccgaactgtccttagctct 3009

>gb|AC106716.3| Homo sapiens 3 BAC RP11-202P1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152883

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 128    tttctgtagataattgttttat 149
              ||||||||||||||||||||||
Sbjct: 152165 tttctgtagataattgttttat 152144

>gb|AC117424.6| Homo sapiens 3 BAC RP11-172I10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 136511

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 128   tttctgtagataattgttttat 149
             ||||||||||||||||||||||
Sbjct: 50503 tttctgtagataattgttttat 50524

>gb|AC124727.4| Mus musculus BAC clone RP23-465O22 from chromosome 3, complete sequence
          Length = 181528

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 453   cctccttcccactgtccttag 473
             |||||||||||||||||||||
Sbjct: 96160 cctccttcccactgtccttag 96180

>gb|AC183622.3| Pan troglodytes BAC clone CH251-66G8 from chromosome 15, complete
              sequence
          Length = 206618

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 123    atgattttctgtagataattgttttatat 151
              |||||| | ||||||||||||||||||||
Sbjct: 163021 atgattatatgtagataattgttttatat 162993

>emb|BX548161.12| Zebrafish DNA sequence from clone DKEY-248F6 in linkage group 16,
             complete sequence
          Length = 188754

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   tttctgtagataattgtttta 148
             |||||||||||||||||||||
Sbjct: 65723 tttctgtagataattgtttta 65703

>gb|AC087474.9| Homo sapiens chromosome 15, clone RP11-350A1, complete sequence
          Length = 185221

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 123    atgattttctgtagataattgttttatat 151
              |||||| | ||||||||||||||||||||
Sbjct: 137710 atgattatatgtagataattgttttatat 137682

>emb|BX000364.6| Zebrafish DNA sequence from clone DKEY-11K1 in linkage group 17,
             complete sequence
          Length = 189563

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 126   attttctgtagataattgttt 146
             |||||||||||||||||||||
Sbjct: 74367 attttctgtagataattgttt 74347

>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 302     aaggattcaacatcatcaatt 322
               |||||||||||||||||||||
Sbjct: 1299378 aaggattcaacatcatcaatt 1299398

>gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, complete sequence
          Length = 214933

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    gtccaaactgcagccacaca 188
              ||||||||||||||||||||
Sbjct: 168021 gtccaaactgcagccacaca 168040

>gb|AC158220.4| Mus musculus chromosome 7, clone RP23-278M8, complete sequence
          Length = 189304

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 100  cttggtggaggcagccacac 119
            ||||||||||||||||||||
Sbjct: 4717 cttggtggaggcagccacac 4736

>gb|AC162389.6| Mus musculus 6 BAC RP24-114M8 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 189477

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    gcagcttggcagcctcagca 361
              ||||||||||||||||||||
Sbjct: 156401 gcagcttggcagcctcagca 156420

>gb|AC130969.4| Rattus norvegicus 2 BAC CH230-105B13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 238254

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   tcctccttcccactgtcctt 471
             ||||||||||||||||||||
Sbjct: 67251 tcctccttcccactgtcctt 67232

>gb|AC117098.6| Rattus norvegicus 2 BAC CH230-271M7 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 174234

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 452    tcctccttcccactgtcctt 471
              ||||||||||||||||||||
Sbjct: 169063 tcctccttcccactgtcctt 169044

>ref|XM_388668.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08492.1)
            partial mRNA
          Length = 1929

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 351  cagcctcagcaatatcagagttgcaacc 378
            ||||| |||||||||||||||| |||||
Sbjct: 1672 cagccacagcaatatcagagttacaacc 1699

>emb|CR388017.7| Zebrafish DNA sequence from clone CH211-283H24 in linkage group 7,
             complete sequence
          Length = 111978

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   aactgcagccacacaaatga 193
             ||||||||||||||||||||
Sbjct: 37071 aactgcagccacacaaatga 37090

>gb|AC115123.4| Mus musculus BAC clone RP24-129O20 from 3, complete sequence
          Length = 181380

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    attttctgtagataattgtt 145
              ||||||||||||||||||||
Sbjct: 181294 attttctgtagataattgtt 181313

>gb|AC121925.2| Mus musculus BAC clone RP24-201D17 from 6, complete sequence
          Length = 180015

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   gcagcttggcagcctcagca 361
             ||||||||||||||||||||
Sbjct: 25423 gcagcttggcagcctcagca 25442

>ref|XM_774519.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_81_139637_136254) partial mRNA
          Length = 3384

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 35  ttgtggaagattttctgtagatga 58
           ||||||||||||||||||| ||||
Sbjct: 368 ttgtggaagattttctgtacatga 391

>gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, complete sequence
          Length = 242745

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   gtccaaactgcagccacaca 188
             ||||||||||||||||||||
Sbjct: 14850 gtccaaactgcagccacaca 14869

>gb|AC136712.9| Mus musculus chromosome 3, clone RP23-36H15, complete sequence
          Length = 201139

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    attttctgtagataattgtt 145
              ||||||||||||||||||||
Sbjct: 102879 attttctgtagataattgtt 102898

>gb|AC148607.16| Medicago truncatula clone mth2-43g15, complete sequence
          Length = 148291

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    acatgattttctgtagataa 140
              ||||||||||||||||||||
Sbjct: 106237 acatgattttctgtagataa 106256

>emb|AL353807.18| Human DNA sequence from clone RP11-29H23 on chromosome 1 Contains the
             5' end of the ASH1L gene for ash1 (absent, small, or
             homeotic)-like (Drosophila), two novel genes, a pseudogene
             similar to part of death associated protein 3 (DAP3), the
             gene for a novel protein (FLJ10504), the 3' end of a novel
             pseudogene and a CpG island, complete sequence
          Length = 179064

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   ttttctgtagataattgttt 146
             ||||||||||||||||||||
Sbjct: 14233 ttttctgtagataattgttt 14214

>emb|BX511084.9| Zebrafish DNA sequence from clone DKEY-265C15 in linkage group 13,
             complete sequence
          Length = 156524

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   accaaacaaacaggatccaa 258
             ||||||||||||||||||||
Sbjct: 52547 accaaacaaacaggatccaa 52528

>emb|CR381585.11| Zebrafish DNA sequence from clone DKEY-27P7 in linkage group 20
             Contains the gene for a novel protein similar to mouse and
             human integrin beta 1 binding protein 1 (ITGB1BP1), the
             gene for a novel protein similar to vertebrate development
             and differentiation enhancing factor 2 (DDEF2) and three
             CpG islands, complete sequence
          Length = 209698

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   aactgcagccacacaaatga 193
             ||||||||||||||||||||
Sbjct: 80388 aactgcagccacacaaatga 80369

>gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, complete sequence
          Length = 166114

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   tcagcagaggtttggataaa 284
             ||||||||||||||||||||
Sbjct: 75482 tcagcagaggtttggataaa 75501

>gb|AC148986.5| Mus musculus BAC clone RP23-89A16 from chromosome 7, complete sequence
          Length = 243039

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   cttggtggaggcagccacac 119
             ||||||||||||||||||||
Sbjct: 50019 cttggtggaggcagccacac 50000

>gb|AC159625.2| Mus musculus BAC clone RP24-262L7 from chromosome 12, complete sequence
          Length = 189979

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     tggaagattttctgtagatg 57
              ||||||||||||||||||||
Sbjct: 177078 tggaagattttctgtagatg 177097

>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 260     ttccctcagcagaggtttggataa 283
               |||||||| |||||||||||||||
Sbjct: 1183556 ttccctcatcagaggtttggataa 1183533

>gb|AC154185.1| Mus musculus BAC clone RP24-67L15 from chromosome 17, complete sequence
          Length = 167726

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    gcagtccatgactgctcttg 342
              ||||||||||||||||||||
Sbjct: 124760 gcagtccatgactgctcttg 124741

>emb|BX001022.9| Zebrafish DNA sequence from clone CH211-243O19, complete sequence
          Length = 160804

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   accaaacaaacaggatccaa 258
             ||||||||||||||||||||
Sbjct: 56882 accaaacaaacaggatccaa 56901

>gb|AC102367.35| Mus musculus chromosome 3, clone RP23-211J6, complete sequence
          Length = 185452

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    cacacaacatgattttctgt 134
              ||||||||||||||||||||
Sbjct: 156276 cacacaacatgattttctgt 156257

>dbj|AP001829.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-254C5, complete
             sequence
          Length = 117291

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 133   gtagataattgttttatatcaactatgg 160
             |||| ||||| |||||||||||||||||
Sbjct: 46483 gtaggtaattattttatatcaactatgg 46456

>gb|AC161242.2| Mus musculus BAC clone RP24-200E4 from chromosome 12, complete sequence
          Length = 179665

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    tggaagattttctgtagatg 57
             ||||||||||||||||||||
Sbjct: 95063 tggaagattttctgtagatg 95082

>gb|AC141883.4| Mus musculus BAC clone RP24-128P19 from 7, complete sequence
          Length = 189828

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    cttggtggaggcagccacac 119
              ||||||||||||||||||||
Sbjct: 102543 cttggtggaggcagccacac 102524


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,012,366
Number of Sequences: 3902068
Number of extensions: 5012366
Number of successful extensions: 101914
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101755
Number of HSP's gapped (non-prelim): 151
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)