ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 280 3e-72
2gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 278 1e-71
3emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 96 9e-17
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 96 9e-17
5dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 9e-17
6dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 9e-17
7emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 96 9e-17
8emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for pu... 94 3e-16
9emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for pu... 94 3e-16
10emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic tr... 86 8e-14
11gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence 56 7e-05
12gb|AY110434.1| Zea mays CL533_2 mRNA sequence 52 0.001
13gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete se... 46 0.071
14gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete s... 46 0.071
15emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5... 44 0.28
16gb|AY109824.1| Zea mays CL533_1 mRNA sequence 44 0.28
17gb|AC182813.8| Medicago truncatula clone mth2-69k1, complete seq... 42 1.1
18gb|AC174297.11| Medicago truncatula clone mth2-73p24, complete s... 42 1.1
19gb|AC144540.7| Medicago truncatula clone mth2-19p16, complete se... 42 1.1
20gb|AC146745.20| Medicago truncatula clone mth2-53p19, complete s... 42 1.1
21gb|AC144657.6| Medicago truncatula clone mth2-16a6, complete seq... 42 1.1
22gb|AC140722.11| Medicago truncatula clone mth2-14e20, complete s... 42 1.1
23emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chr... 42 1.1
24emb|BX530033.6| Zebrafish DNA sequence from clone CH211-209F14 i... 42 1.1
25gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, compl... 42 1.1
26gb|AC022127.4|AC022127 Homo sapiens chromosome 5 clone CTD-2151N... 42 1.1
27emb|CT033770.2| Medicago truncatula chromosome 5 clone mth2-176e... 42 1.1
28emb|CR749776.6| Zebrafish DNA sequence from clone CH211-206L17 i... 42 1.1
29gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosom... 40 4.4
30gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, com... 40 4.4
31gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome... 40 4.4
32gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, c... 40 4.4
33gb|AC124740.4| Mus musculus BAC clone RP23-356M1 from chromosome... 40 4.4
34gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's ... 40 4.4
35emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on ch... 40 4.4
36emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chr... 40 4.4
37emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chr... 40 4.4
38gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's... 40 4.4
39emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chr... 40 4.4
40emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo... 40 4.4
41emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 ... 40 4.4
42gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, comp... 40 4.4
43gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, co... 40 4.4
44dbj|AK135378.1| Mus musculus 12 days embryo female mullerian duc... 40 4.4
45gb|AC008650.8| Homo sapiens chromosome 5 clone CTB-186M2, comple... 40 4.4
46dbj|AK038355.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 4.4
47gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, c... 40 4.4
48dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 40 4.4
49emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chro... 40 4.4
50emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in ... 40 4.4
51emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on ch... 40 4.4
52emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-9... 40 4.4
53gb|AC163101.9| Mus musculus chromosome 18, clone RP24-177G6, com... 40 4.4
54gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, c... 40 4.4
55gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete... 40 4.4
56gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, compl... 40 4.4 
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
            sequence
          Length = 2863

 Score =  280 bits (141), Expect = 3e-72
 Identities = 156/160 (97%), Gaps = 2/160 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    aagccaaaataatcttaaattcagttttcgactcctacaatgctgacacgatat--tgta 58
            |||||||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 2863 aagccaaaatgatcttagattcagttttcgactcctacaatgctgacacgatatattgta 2804

                                                                        
Query: 59   accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 2744

                                                    
Query: 119  aataataacattggaggagacacaaaaacatcccatttga 158
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 aataataacattggaggagacacaaaaacatcccatttga 2704



 Score =  240 bits (121), Expect = 2e-60
 Identities = 147/153 (96%), Gaps = 2/153 (1%)
 Strand = Plus / Minus

                                                                        
Query: 181  gccttgttcattcccaggctccagcaagagttaggccgccgtcgcc-gagagaccaaaat 239
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 2693 gccttgttcattcccaggctccagcaagagttaggccgccgtcgccagagagaccaaa-t 2635

                                                                        
Query: 240  ccatggcttcttcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaatat 299
            |||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 2634 ccatggcttctttctgtcctcgaaacaataatcaacactcatgtgacctcgcaaaaatat 2575

                                             
Query: 300  acagctcaaaactggctgttgctcacatcccag 332
            |||||||||||||||||||||||||||||||||
Sbjct: 2574 acagctcaaaactggctgttgctcacatcccag 2542
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>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA,
            complete cds
          Length = 2887

 Score =  278 bits (140), Expect = 1e-71
 Identities = 149/152 (98%)
 Strand = Plus / Minus

                                                                        
Query: 181  gccttgttcattcccaggctccagcaagagttaggccgccgtcgccgagagaccaaaatc 240
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2696 gccttgttcattcccaggctccagcgagagttaggccgccgtcgccgagagaccaaaatc 2637

                                                                        
Query: 241  catggcttcttcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaatata 300
            |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 2636 catggcttcttcctttcctcgaaacaataatcaacactcatgtgacctcgcaaaaatata 2577

                                            
Query: 301  cagctcaaaactggctgttgctcacatcccag 332
            ||||||||||||||||||||||||||||||||
Sbjct: 2576 cagctcaaaactggctgttgctcacatcccag 2545



 Score =  274 bits (138), Expect = 2e-70
 Identities = 150/153 (98%), Gaps = 2/153 (1%)
 Strand = Plus / Minus

                                                                        
Query: 6    aaaataatcttaaattcagttttcgactcctacaatgctgacacgatat--tgtaaccga 63
            |||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 2862 aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 2803

                                                                        
Query: 64   cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 2743

                                             
Query: 124  taacattggaggagacacaaaaacatcccattt 156
            |||||||||||||||||||||||||||||||||
Sbjct: 2742 taacattggaggagacacaaaaacatcccattt 2710
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 88/102 (86%), Gaps = 7/102 (6%)
 Strand = Plus / Plus

                                                                         
Query: 234   caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 286
             |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 42261 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 42320

                                                       
Query: 287   ctcgcaaaaatatacagctcaaaactggctgttgctcacatc 328
             || ||||||||||||||| |||||||||||||||||||||||
Sbjct: 42321 cttgcaaaaatatacagcacaaaactggctgttgctcacatc 42362



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                         
Query: 58    aaccgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaag 117
             |||| ||||||||||||||||||| |||||||||||||||| |||||| | || ||||||
Sbjct: 42122 aaccaacagaatactccaaaaccatagtacattgttacaaaatgtgtacgcacagaaaag 42181

                      
Query: 118   aaataataa 126
             || ||||||
Sbjct: 42182 aactaataa 42190
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 88/102 (86%), Gaps = 7/102 (6%)
 Strand = Plus / Plus

                                                                            
Query: 234      caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 286
                |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 24921676 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 24921735

                                                          
Query: 287      ctcgcaaaaatatacagctcaaaactggctgttgctcacatc 328
                || ||||||||||||||| |||||||||||||||||||||||
Sbjct: 24921736 cttgcaaaaatatacagcacaaaactggctgttgctcacatc 24921777



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                            
Query: 58       aaccgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaag 117
                |||| ||||||||||||||||||| |||||||||||||||| |||||| | || ||||||
Sbjct: 24921537 aaccaacagaatactccaaaaccatagtacattgttacaaaatgtgtacgcacagaaaag 24921596

                         
Query: 118      aaataataa 126
                || ||||||
Sbjct: 24921597 aactaataa 24921605
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>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full
            insert sequence
          Length = 2907

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 88/102 (86%), Gaps = 7/102 (6%)
 Strand = Plus / Minus

                                                                        
Query: 234  caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 286
            |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 2639 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 2580

                                                      
Query: 287  ctcgcaaaaatatacagctcaaaactggctgttgctcacatc 328
            || ||||||||||||||| |||||||||||||||||||||||
Sbjct: 2579 cttgcaaaaatatacagcacaaaactggctgttgctcacatc 2538



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 58   aaccgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaag 117
            |||| ||||||||||||||||||| |||||||||||||||| |||||| | || ||||||
Sbjct: 2778 aaccaacagaatactccaaaaccatagtacattgttacaaaatgtgtacgcacagaaaag 2719

                     
Query: 118  aaataataa 126
            || ||||||
Sbjct: 2718 aactaataa 2710
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>dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A02, full
            insert sequence
          Length = 1712

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 88/102 (86%), Gaps = 7/102 (6%)
 Strand = Plus / Minus

                                                                        
Query: 234  caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 286
            |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 1545 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 1486

                                                      
Query: 287  ctcgcaaaaatatacagctcaaaactggctgttgctcacatc 328
            || ||||||||||||||| |||||||||||||||||||||||
Sbjct: 1485 cttgcaaaaatatacagcacaaaactggctgttgctcacatc 1444



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 58   aaccgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaag 117
            |||| ||||||||||||||||||| |||||||||||||||| |||||| | || ||||||
Sbjct: 1684 aaccaacagaatactccaaaaccatagtacattgttacaaaatgtgtacgcacagaaaag 1625

                     
Query: 118  aaataataa 126
            || ||||||
Sbjct: 1624 aactaataa 1616
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 88/102 (86%), Gaps = 7/102 (6%)
 Strand = Plus / Plus

                                                                         
Query: 234   caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 286
             |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 49790 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 49849

                                                       
Query: 287   ctcgcaaaaatatacagctcaaaactggctgttgctcacatc 328
             || ||||||||||||||| |||||||||||||||||||||||
Sbjct: 49850 cttgcaaaaatatacagcacaaaactggctgttgctcacatc 49891



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                         
Query: 58    aaccgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaag 117
             |||| ||||||||||||||||||| |||||||||||||||| |||||| | || ||||||
Sbjct: 49651 aaccaacagaatactccaaaaccatagtacattgttacaaaatgtgtacgcacagaaaag 49710

                      
Query: 118   aaataataa 126
             || ||||||
Sbjct: 49711 aactaataa 49719
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>emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar Gigante
          Length = 2599

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                        
Query: 262  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 321
            |||||||||| ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 2572 aaacaataatgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 2513

                   
Query: 322  tcacatc 328
            |||||||
Sbjct: 2512 tcacatc 2506
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>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar IR64
          Length = 2599

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 87/101 (86%), Gaps = 7/101 (6%)
 Strand = Plus / Minus

                                                                        
Query: 235  aaaatccatggcttcttcctttcc-------tccaaacaataatcaacactcatgtaacc 287
            ||||||||||||||||| ||||||       || |||||||||| ||||||||| | |||
Sbjct: 2599 aaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgacc 2540

                                                     
Query: 288  tcgcaaaaatatacagctcaaaactggctgttgctcacatc 328
            | ||||||||||||||| |||||||||||||||||||||||
Sbjct: 2539 ttgcaaaaatatacagcacaaaactggctgttgctcacatc 2499
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>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation
            factor 4 gamma (eif(iso)4g gene), cultivar Tog5681
          Length = 2699

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                        
Query: 262  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 321
            |||||||||  ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 2666 aaacaataacgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 2607

                   
Query: 322  tcacatc 328
            |||||||
Sbjct: 2606 tcacatc 2600
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>gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence
          Length = 249

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 273 aacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgctcacatc 328
           ||||||||| | | ||||||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 132 aacactcatctgatctcgcaaaattatacagcccaaaactggctgttcctcgcatc 187



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 235 aaaatccatggcttcttcctttcc 258
           ||||||||||||||||| ||||||
Sbjct: 74  aaaatccatggcttctttctttcc 97
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>gb|AY110434.1| Zea mays CL533_2 mRNA sequence
          Length = 843

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 287 ctcgcaaaaatatacagctcaaaactggctgttgctcacatc 328
           ||||||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 600 ctcgcaaaattatacagcccaaaactggctgttcctcgcatc 559



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 235 aaaatccatggcttcttcctttcc 258
           ||||||||||||||||| ||||||
Sbjct: 672 aaaatccatggcttctttctttcc 649
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>gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete sequence
          Length = 92346

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 141   caaaaacatcccatttgacagaagaag 167
             |||||||||||||||||| ||||||||
Sbjct: 45816 caaaaacatcccatttgagagaagaag 45842
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>gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete sequence
          Length = 105045

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 141   caaaaacatcccatttgacagaagaag 167
             |||||||||||||||||| ||||||||
Sbjct: 28363 caaaaacatcccatttgagagaagaag 28337
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>emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5 on chromosome X, complete
            sequence
          Length = 39550

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 105  aagaactgaaaagaaataataacatt 130
            |||| |||||||||||||||||||||
Sbjct: 3229 aagagctgaaaagaaataataacatt 3204
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>gb|AY109824.1| Zea mays CL533_1 mRNA sequence
          Length = 2894

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 287  ctcgcaaaaatatacagctcaaaactggctgttgctca 324
            ||||||||| |||||||||||||| || ||||| ||||
Sbjct: 2656 ctcgcaaaattatacagctcaaaattgtctgttcctca 2619
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>gb|AC182813.8| Medicago truncatula clone mth2-69k1, complete sequence
          Length = 131049

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      aaaataatcttaaattcagtt 26
              |||||||||||||||||||||
Sbjct: 100850 aaaataatcttaaattcagtt 100830
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>gb|AC174297.11| Medicago truncatula clone mth2-73p24, complete sequence
          Length = 115210

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     aaaataatcttaaattcagtt 26
             |||||||||||||||||||||
Sbjct: 48268 aaaataatcttaaattcagtt 48248
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>gb|AC144540.7| Medicago truncatula clone mth2-19p16, complete sequence
          Length = 78737

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     aaaataatcttaaattcagtt 26
             |||||||||||||||||||||
Sbjct: 25465 aaaataatcttaaattcagtt 25445
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>gb|AC146745.20| Medicago truncatula clone mth2-53p19, complete sequence
          Length = 121952

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     aaaataatcttaaattcagtt 26
             |||||||||||||||||||||
Sbjct: 34894 aaaataatcttaaattcagtt 34914
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>gb|AC144657.6| Medicago truncatula clone mth2-16a6, complete sequence
          Length = 92738

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     aaaataatcttaaattcagtt 26
             |||||||||||||||||||||
Sbjct: 85376 aaaataatcttaaattcagtt 85396
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>gb|AC140722.11| Medicago truncatula clone mth2-14e20, complete sequence
          Length = 97982

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     aaaataatcttaaattcagtt 26
             |||||||||||||||||||||
Sbjct: 42222 aaaataatcttaaattcagtt 42202
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>emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chromosome 13q21.33-22.3
             Contains a signal sequence receptor, alpha
             (translocon-associated protein alpha) (SSR1) pseudogene,
             complete sequence
          Length = 151603

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 192   tcccaggctccagcaagagtt 212
             |||||||||||||||||||||
Sbjct: 87107 tcccaggctccagcaagagtt 87087
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>emb|BX530033.6| Zebrafish DNA sequence from clone CH211-209F14 in linkage group 9,
             complete sequence
          Length = 221265

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 37    acaatgctgacacgatattgtaacc 61
             |||||||||| ||||||||||||||
Sbjct: 33826 acaatgctgaaacgatattgtaacc 33802
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>gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, complete sequence
          Length = 67124

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 192  tcccaggctccagcaagagtt 212
            |||||||||||||||||||||
Sbjct: 3598 tcccaggctccagcaagagtt 3618
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>gb|AC022127.4|AC022127 Homo sapiens chromosome 5 clone CTD-2151N11, complete sequence
          Length = 83029

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 192   tcccaggctccagcaagagtt 212
             |||||||||||||||||||||
Sbjct: 34025 tcccaggctccagcaagagtt 34005
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>emb|CT033770.2| Medicago truncatula chromosome 5 clone mth2-176e1, COMPLETE SEQUENCE
          Length = 138194

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     aaaataatcttaaattcagtt 26
             |||||||||||||||||||||
Sbjct: 84861 aaaataatcttaaattcagtt 84841
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>emb|CR749776.6| Zebrafish DNA sequence from clone CH211-206L17 in linkage group 9,
             complete sequence
          Length = 154131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 37    acaatgctgacacgatattgtaacc 61
             |||||||||| ||||||||||||||
Sbjct: 76750 acaatgctgaaacgatattgtaacc 76774
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>gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosome 8, complete sequence
          Length = 153426

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   gaaaagaaataataacattg 131
             ||||||||||||||||||||
Sbjct: 39323 gaaaagaaataataacattg 39342
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>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence
          Length = 186062

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     aaattgtgtaagaactgaaa 115
              ||||||||||||||||||||
Sbjct: 107485 aaattgtgtaagaactgaaa 107504
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>gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome 13, complete sequence
          Length = 205869

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   ccatggcttcttcctttcct 259
             ||||||||||||||||||||
Sbjct: 31484 ccatggcttcttcctttcct 31503
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>gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, complete sequence
          Length = 192584

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 92     ttacaaattgtgtaagaactgaaaagaaataa 123
              |||||||| || ||||||||||||| ||||||
Sbjct: 132634 ttacaaatagtttaagaactgaaaataaataa 132665
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>gb|AC124740.4| Mus musculus BAC clone RP23-356M1 from chromosome 18, complete sequence
          Length = 190023

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   cccaggctccagcaagagtt 212
             ||||||||||||||||||||
Sbjct: 97827 cccaggctccagcaagagtt 97808
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>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 170859

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   tgaaaagaaataataacatt 130
             ||||||||||||||||||||
Sbjct: 30825 tgaaaagaaataataacatt 30844
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>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete
           sequence
          Length = 164559

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 99  ttgtgtaagaactgaaaagaaata 122
           |||||||||||||||||| |||||
Sbjct: 55  ttgtgtaagaactgaaaaaaaata 32
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>emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chromosome 9 Contains a
             novel pseudogene, complete sequence
          Length = 110443

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   caaaaatatacagctcaaaa 310
             ||||||||||||||||||||
Sbjct: 35208 caaaaatatacagctcaaaa 35189
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>emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chromosome 9 Contains the 3'
              end of a novel gene, and a novel pseudogene, complete
              sequence
          Length = 131366

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 99     ttgtgtaagaactgaaaagaaata 122
              |||||||||||||||||| |||||
Sbjct: 129421 ttgtgtaagaactgaaaaaaaata 129398
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>gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 211584

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   tgaaaagaaataataacatt 130
             ||||||||||||||||||||
Sbjct: 41625 tgaaaagaaataataacatt 41606
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>emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chromosome 13 Contains the
             Foxq1 gene for forkhead box Q1 (Hfh1l), two novel genes
             and two CpG islands, complete sequence
          Length = 187709

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   ttcattcccaggctccagca 206
             ||||||||||||||||||||
Sbjct: 35935 ttcattcccaggctccagca 35916
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>emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo-8-phosphate synthase, exons
           1-4
          Length = 1812

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 taagaactgaaaagaaataa 123
           ||||||||||||||||||||
Sbjct: 639 taagaactgaaaagaaataa 620
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>emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 in linkage group 20,
             complete sequence
          Length = 86384

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   tgaaaagaaataataacatt 130
             ||||||||||||||||||||
Sbjct: 84744 tgaaaagaaataataacatt 84763
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>gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, complete sequence
          Length = 96678

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    acaaattgtgtaagaactga 113
             ||||||||||||||||||||
Sbjct: 56401 acaaattgtgtaagaactga 56382
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>gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, complete sequence
          Length = 148110

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   ttgttcattcccaggctcca 203
             ||||||||||||||||||||
Sbjct: 70836 ttgttcattcccaggctcca 70817
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>dbj|AK135378.1| Mus musculus 12 days embryo female mullerian duct includes
            surrounding region cDNA, RIKEN full-length enriched
            library, clone:6820409O14 product:unclassifiable, full
            insert sequence
          Length = 3242

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 301  cagctcaaaactggctgttg 320
            ||||||||||||||||||||
Sbjct: 2547 cagctcaaaactggctgttg 2566
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>gb|AC008650.8| Homo sapiens chromosome 5 clone CTB-186M2, complete sequence
          Length = 139226

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aagccaaaataatcttaaat 20
             ||||||||||||||||||||
Sbjct: 28464 aagccaaaataatcttaaat 28483
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>dbj|AK038355.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130097D18
           product:unclassifiable, full insert sequence
          Length = 719

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 cccaggctccagcaagagtt 212
           ||||||||||||||||||||
Sbjct: 28  cccaggctccagcaagagtt 9
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>gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, complete sequence
          Length = 41476

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 101  gtgtaagaactgaaaagaaa 120
            ||||||||||||||||||||
Sbjct: 5836 gtgtaagaactgaaaagaaa 5855
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 104    taagaactgaaaagaaataataac 127
              |||||||| |||||||||||||||
Sbjct: 183747 taagaacttaaaagaaataataac 183724
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>emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chromosome 2, complete
             sequence
          Length = 159731

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   gaaaagaaataataacattg 131
             ||||||||||||||||||||
Sbjct: 65829 gaaaagaaataataacattg 65810
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>emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in linkage group 20,
           complete sequence
          Length = 9831

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 tgaaaagaaataataacatt 130
           ||||||||||||||||||||
Sbjct: 360 tgaaaagaaataataacatt 379
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>emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on chromosome 17, complete
              sequence
          Length = 203311

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    gctcaaaactggctgttgct 322
              ||||||||||||||||||||
Sbjct: 133196 gctcaaaactggctgttgct 133215
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>emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-99L13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178433

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 124   taacattggaggagacacaaaaac 147
             ||||||||||||||||||| ||||
Sbjct: 93093 taacattggaggagacacataaac 93116
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>gb|AC163101.9| Mus musculus chromosome 18, clone RP24-177G6, complete sequence
          Length = 154555

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    cagctcaaaactggctgttg 320
              ||||||||||||||||||||
Sbjct: 125944 cagctcaaaactggctgttg 125963
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>gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, complete sequence
          Length = 242449

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   cagctcaaaactggctgttg 320
             ||||||||||||||||||||
Sbjct: 68402 cagctcaaaactggctgttg 68421
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>gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete sequence
          Length = 136080

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   ttcccaggctccagcaagag 210
             ||||||||||||||||||||
Sbjct: 42008 ttcccaggctccagcaagag 41989
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>gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  gaaaagaaataataacattg 131
            ||||||||||||||||||||
Sbjct: 7379 gaaaagaaataataacattg 7360


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,031,987
Number of Sequences: 3902068
Number of extensions: 4031987
Number of successful extensions: 90896
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90733
Number of HSP's gapped (non-prelim): 160
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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