ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY483155.1| Hordeum vulgare putative cellulose synthase catal... 101 1e-18
2gb|DQ020207.1| Bambusa oldhamii cellulose synthase BoCesA1a mRNA... 80 5e-12
3gb|AF200526.1|AF200526 Zea mays cellulose synthase-2 (CesA-2) mR... 68 2e-08
4gb|DQ020209.1| Bambusa oldhamii cellulose synthase BoCesA2 mRNA,... 56 7e-05
5gb|AC158909.6| Mus musculus chromosome 1, clone RP23-118K4, comp... 48 0.018
6gb|AC123718.9| Mus musculus chromosome 1, clone RP23-401A11, com... 48 0.018
7gb|AF200525.1|AF200525 Zea mays cellulose synthase-1 (CesA-1) mR... 46 0.071
8gb|AY110415.1| Zea mays CL1166_1 mRNA sequence 46 0.071
9ref|XM_512070.1| PREDICTED: Pan troglodytes similar to Transcrip... 44 0.28
10gb|AC022069.6| Homo sapiens, clone RP11-107K17, complete sequence 44 0.28
11dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 44 0.28
12ref|XM_937014.1| PREDICTED: Homo sapiens TAF4b RNA polymerase II... 44 0.28
13ref|XM_290809.5| PREDICTED: Homo sapiens TAF4b RNA polymerase II... 44 0.28
14gb|AY888049.1| Homo sapiens TAFII105-E9 mRNA, complete cds, alte... 44 0.28
15gb|AY888048.1| Homo sapiens TAFII105 mRNA, complete cds, alterna... 44 0.28
16gb|AC121320.7| Homo sapiens chromosome 18, clone RP11-25D3, comp... 44 0.28
17emb|AL031670.6|HS681N20 Human DNA sequence from clone RP4-681N20... 44 0.28
18gb|AC120543.7| Mus musculus chromosome 8, clone RP23-330A24, com... 42 1.1
19gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
20gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
21emb|CT009661.10| Mouse DNA sequence from clone CH29-621D18 on ch... 42 1.1
22gb|AC126252.3| Mus musculus BAC clone RP23-480B9 from chromosome... 42 1.1
23emb|AL353764.9| Human DNA sequence from clone RP11-440G5 on chro... 42 1.1
24dbj|AK164733.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 42 1.1
25gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 42 1.1
26dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
27gb|AC153100.3| Oryctolagus cuniculus clone LB1-192J7, complete s... 42 1.1
28gb|AC151390.3| Oryctolagus cuniculus clone LB1-118M16, complete ... 42 1.1
29emb|X60106.1|ECCSVR E.coli csvR gene 42 1.1
30dbj|AK102140.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
31dbj|AK100188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
32dbj|AK099281.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
33dbj|AK099228.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
34dbj|AK098978.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
35dbj|AK067967.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
36dbj|AK060838.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
37dbj|AK060079.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
38gb|AC147054.4| Pan troglodytes BAC clone RP43-145A1 from 7, comp... 40 4.4
39gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 4.4
40gb|AC166564.2| Spironucleus vortens clone JGIBAWF-9K17, complete... 40 4.4
41gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.4
42emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.4
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
44gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 geno... 40 4.4
45emb|CR942285.1| Escherichia coli plasmid pCoo 40 4.4 
>gb|AY483155.1| Hordeum vulgare putative cellulose synthase catalytic subunit (CesA6)
            mRNA, complete cds
          Length = 3745

 Score =  101 bits (51), Expect = 1e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                        
Query: 209  tccgtcttcatctacaacaacaaaatcccatccaaccccctccggtatttacacgagggg 268
            |||||||||||||||||| | |||||||| || ||||||||||||||||||||| |||||
Sbjct: 3518 tccgtcttcatctacaaccaaaaaatcccgtctaaccccctccggtatttacactagggg 3459

                       
Query: 269  ggcagatactc 279
            |||||||||||
Sbjct: 3458 ggcagatactc 3448



 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                      
Query: 1    gatgcaacagctgccttatataaatagttggtgtcatagtgt 42
            ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3729 gatgcaacagctgccttatataaattgttggtgtcatagtgt 3688



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 290  atcagcagttgacgccacactgccccatggcgacggc 326
            |||||||||||||||| |||||||||||||| |||||
Sbjct: 3429 atcagcagttgacgccgcactgccccatggcaacggc 3393



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 128  tcacaatgtacgctgcaggtttcgtag 154
            |||||||||||||||||||||||||||
Sbjct: 3606 tcacaatgtacgctgcaggtttcgtag 3580
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>gb|DQ020207.1| Bambusa oldhamii cellulose synthase BoCesA1a mRNA, complete cds
          Length = 3547

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 50/52 (96%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 213  tcttcatctacaacaacaaaatcccatccaaccccctccggtatttacacga 264
            |||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 3351 tcttcatctacaacaa-aaaatcccatccaaccccctcaggtatttacacga 3301



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 128  tcacaatgtacgctgcaggtttcgtaggc 156
            ||||||| |||||||||||||||||||||
Sbjct: 3464 tcacaatttacgctgcaggtttcgtaggc 3436



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 290  atcagcagttgacgccacactgccccatggcgacggctttc 330
            |||||||||| || || |||||||||| |||||||||||||
Sbjct: 3254 atcagcagttcacaccgcactgccccaaggcgacggctttc 3214



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 69   ataatatactctaag-aagaaacaacaggtatcaca 103
            ||||||||||||||| || | |||||||||||||||
Sbjct: 3510 ataatatactctaagcaatagacaacaggtatcaca 3475
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>gb|AF200526.1|AF200526 Zea mays cellulose synthase-2 (CesA-2) mRNA, complete cds
          Length = 3725

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 216  tcatctacaacaacaaaatcccatccaaccccctccggtatttacacgaggggg 269
            ||||||||||||| ||| ||||||| | ||||||| ||||||||||||||||||
Sbjct: 3501 tcatctacaacaaaaaattcccatctagccccctcaggtatttacacgaggggg 3448
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>gb|DQ020209.1| Bambusa oldhamii cellulose synthase BoCesA2 mRNA, complete cds
          Length = 3648

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 227  aacaaaatcccatccaaccccctccggtatttacacgagggggg 270
            ||||||||| |||| |||| |||| |||||||||||||||||||
Sbjct: 3420 aacaaaatcacatctaaccacctctggtatttacacgagggggg 3377
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>gb|AC158909.6| Mus musculus chromosome 1, clone RP23-118K4, complete sequence
          Length = 218810

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 220    ctacaacaacaaaatcccatccaa 243
              ||||||||||||||||||||||||
Sbjct: 118438 ctacaacaacaaaatcccatccaa 118461
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>gb|AC123718.9| Mus musculus chromosome 1, clone RP23-401A11, complete sequence
          Length = 225702

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 220    ctacaacaacaaaatcccatccaa 243
              ||||||||||||||||||||||||
Sbjct: 146708 ctacaacaacaaaatcccatccaa 146685
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>gb|AF200525.1|AF200525 Zea mays cellulose synthase-1 (CesA-1) mRNA, complete cds
          Length = 3752

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 290  atcagcagttgacgccacactgcccca 316
            ||||||||||||||||||| |||||||
Sbjct: 3411 atcagcagttgacgccacattgcccca 3385



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 234  tcccatccaaccccctccggtatttacacgaggggg 269
            ||||||| | || |||| ||||||||||||||||||
Sbjct: 3489 tcccatctagcctcctcaggtatttacacgaggggg 3454
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>gb|AY110415.1| Zea mays CL1166_1 mRNA sequence
          Length = 3898

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 290  atcagcagttgacgccacactgcccca 316
            ||||||||||||||||||| |||||||
Sbjct: 3417 atcagcagttgacgccacattgcccca 3391
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>ref|XM_512070.1| PREDICTED: Pan troglodytes similar to Transcription initiation factor
            TFIID 105 kDa subunit (TAFII-105) (TAFII105) (LOC455346),
            mRNA
          Length = 1547

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 82   agaagaaacaacaggtatcacagatg 107
            |||||||||||||||| |||||||||
Sbjct: 1023 agaagaaacaacaggtttcacagatg 998
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>gb|AC022069.6| Homo sapiens, clone RP11-107K17, complete sequence
          Length = 169240

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 82     agaagaaacaacaggtatcacagatg 107
              |||||||||||||||| |||||||||
Sbjct: 153519 agaagaaacaacaggtttcacagatg 153544
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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 184     ggggcaataataacttacataa 205
               ||||||||||||||||||||||
Sbjct: 1008783 ggggcaataataacttacataa 1008804
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>ref|XM_937014.1| PREDICTED: Homo sapiens TAF4b RNA polymerase II, TATA box binding
            protein (TBP)-associated factor, 105kDa (TAF4B), mRNA
          Length = 5006

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 82   agaagaaacaacaggtatcacagatg 107
            |||||||||||||||| |||||||||
Sbjct: 2205 agaagaaacaacaggtttcacagatg 2180
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>ref|XM_290809.5| PREDICTED: Homo sapiens TAF4b RNA polymerase II, TATA box binding
            protein (TBP)-associated factor, 105kDa (TAF4B), mRNA
          Length = 5006

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 82   agaagaaacaacaggtatcacagatg 107
            |||||||||||||||| |||||||||
Sbjct: 2205 agaagaaacaacaggtttcacagatg 2180
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>gb|AY888049.1| Homo sapiens TAFII105-E9 mRNA, complete cds, alternatively spliced
          Length = 4432

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 82   agaagaaacaacaggtatcacagatg 107
            |||||||||||||||| |||||||||
Sbjct: 1521 agaagaaacaacaggtttcacagatg 1496
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>gb|AY888048.1| Homo sapiens TAFII105 mRNA, complete cds, alternatively spliced
          Length = 4311

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 82   agaagaaacaacaggtatcacagatg 107
            |||||||||||||||| |||||||||
Sbjct: 1521 agaagaaacaacaggtttcacagatg 1496
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>gb|AC121320.7| Homo sapiens chromosome 18, clone RP11-25D3, complete sequence
          Length = 81386

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 82    agaagaaacaacaggtatcacagatg 107
             |||||||||||||||| |||||||||
Sbjct: 51949 agaagaaacaacaggtttcacagatg 51974
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>emb|AL031670.6|HS681N20 Human DNA sequence from clone RP4-681N20 on chromosome 20p12.1-13
             Contains the 3' end of the PANK2 gene the Pantothenate
             kinase 2 (Hallervorden-Spatz syndrome), RNF24 gene for
             ring finger protein 24, a FTL (ferritin light polypeptide)
             pseudogene and two CpG Islands, complete sequence
          Length = 130263

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 217   catctacaacaacaaaatccca 238
             ||||||||||||||||||||||
Sbjct: 73380 catctacaacaacaaaatccca 73359
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>gb|AC120543.7| Mus musculus chromosome 8, clone RP23-330A24, complete sequence
          Length = 210696

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 222    acaacaacaaaatcccatcca 242
              |||||||||||||||||||||
Sbjct: 172738 acaacaacaaaatcccatcca 172758
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>gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617A08,
              complete sequence
          Length = 144781

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 290    atcagcagttgacgccacactgccccatggcgacggctttc 330
              |||||||||| || || || ||||||| |||||||||||||
Sbjct: 128290 atcagcagttcacaccgcattgccccaaggcgacggctttc 128330
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>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0029B02, complete sequence
          Length = 156649

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 290   atcagcagttgacgccacactgccccatggcgacggctttc 330
             |||||||||| || || || ||||||| |||||||||||||
Sbjct: 17133 atcagcagttcacaccgcattgccccaaggcgacggctttc 17173
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>emb|CT009661.10| Mouse DNA sequence from clone CH29-621D18 on chromosome 17, complete
             sequence
          Length = 224982

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 222   acaacaacaaaatcccatccaaccc 246
             ||||||||||||||||| |||||||
Sbjct: 51271 acaacaacaaaatcccaaccaaccc 51295
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>gb|AC126252.3| Mus musculus BAC clone RP23-480B9 from chromosome 17, complete sequence
          Length = 172380

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 222   acaacaacaaaatcccatccaaccc 246
             ||||||||||||||||| |||||||
Sbjct: 34402 acaacaacaaaatcccaaccaaccc 34378
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>emb|AL353764.9| Human DNA sequence from clone RP11-440G5 on chromosome 9 Contains the
              NFIL3 gene for interleukin 3 regulated nuclear factor, a
              novel gene and two CpG islands, complete sequence
          Length = 170898

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 18     atataaatagttggtgtcata 38
              |||||||||||||||||||||
Sbjct: 112748 atataaatagttggtgtcata 112768
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>dbj|AK164733.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
            library, clone:D630050G05 product:serine/arginine-rich
            protein specific kinase 1, full insert sequence
          Length = 4958

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 222  acaacaacaaaatcccatccaaccc 246
            ||||||||||||||||| |||||||
Sbjct: 2256 acaacaacaaaatcccaaccaaccc 2232
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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 75     tactctaagaagaaacaacaggtatcaca 103
              ||||| ||||||||||||||| |||||||
Sbjct: 965698 tactcaaagaagaaacaacagctatcaca 965670
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 290     atcagcagttgacgccacactgccccatggcgacggctttc 330
               |||||||||| || || || ||||||| |||||||||||||
Sbjct: 4506666 atcagcagttcacaccgcattgccccaaggcgacggctttc 4506706
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>gb|AC153100.3| Oryctolagus cuniculus clone LB1-192J7, complete sequence
          Length = 132131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 75     tactctaagaagaaacaacaggtatcaca 103
              ||||| ||||||||||||||| |||||||
Sbjct: 131918 tactcaaagaagaaacaacagctatcaca 131890
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>gb|AC151390.3| Oryctolagus cuniculus clone LB1-118M16, complete sequence
          Length = 41753

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 75   tactctaagaagaaacaacaggtatcaca 103
            ||||| ||||||||||||||| |||||||
Sbjct: 1784 tactcaaagaagaaacaacagctatcaca 1756
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>emb|X60106.1|ECCSVR E.coli csvR gene
          Length = 4689

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 189  aataataacttacataaaact 209
            |||||||||||||||||||||
Sbjct: 4034 aataataacttacataaaact 4014
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>dbj|AK102140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085K01, full
            insert sequence
          Length = 3768

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 290  atcagcagttgacgccacactgccccatggcgacggctttc 330
            |||||||||| || || || ||||||| |||||||||||||
Sbjct: 3418 atcagcagttcacaccgcattgccccaaggcgacggctttc 3378
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>dbj|AK100188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034D20, full
            insert sequence
          Length = 3897

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 290  atcagcagttgacgccacactgccccatggcgacggctttc 330
            |||||||||| || || || ||||||| |||||||||||||
Sbjct: 3418 atcagcagttcacaccgcattgccccaaggcgacggctttc 3378
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>dbj|AK099281.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125F05, full
            insert sequence
          Length = 3801

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 290  atcagcagttgacgccacactgccccatggcgacggctttc 330
            |||||||||| || || || ||||||| |||||||||||||
Sbjct: 3418 atcagcagttcacaccgcattgccccaaggcgacggctttc 3378
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>dbj|AK099228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091P03, full
            insert sequence
          Length = 3732

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 290  atcagcagttgacgccacactgccccatggcgacggctttc 330
            |||||||||| || || || ||||||| |||||||||||||
Sbjct: 3418 atcagcagttcacaccgcattgccccaaggcgacggctttc 3378
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>dbj|AK098978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092B06, full
            insert sequence
          Length = 3764

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 290  atcagcagttgacgccacactgccccatggcgacggctttc 330
            |||||||||| || || || ||||||| |||||||||||||
Sbjct: 3418 atcagcagttcacaccgcattgccccaaggcgacggctttc 3378
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>dbj|AK067967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013125H24, full
            insert sequence
          Length = 3802

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 290  atcagcagttgacgccacactgccccatggcgacggctttc 330
            |||||||||| || || || ||||||| |||||||||||||
Sbjct: 3418 atcagcagttcacaccgcattgccccaaggcgacggctttc 3378
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>dbj|AK060838.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D02, full
            insert sequence
          Length = 1426

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 290  atcagcagttgacgccacactgccccatggcgacggctttc 330
            |||||||||| || || || ||||||| |||||||||||||
Sbjct: 1095 atcagcagttcacaccgcattgccccaaggcgacggctttc 1055
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>dbj|AK060079.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-C08, full
           insert sequence
          Length = 1097

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 290 atcagcagttgacgccacactgccccatggcgacggctttc 330
           |||||||||| || || || ||||||| |||||||||||||
Sbjct: 669 atcagcagttcacaccgcattgccccaaggcgacggctttc 629
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>gb|AC147054.4| Pan troglodytes BAC clone RP43-145A1 from 7, complete sequence
          Length = 153627

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    ataaatagttggtgtcatag 39
             ||||||||||||||||||||
Sbjct: 64706 ataaatagttggtgtcatag 64687
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 226     caacaaaatcccatccaacc 245
               ||||||||||||||||||||
Sbjct: 1996161 caacaaaatcccatccaacc 1996142
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>gb|AC166564.2| Spironucleus vortens clone JGIBAWF-9K17, complete sequence
          Length = 38651

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 213   tcttcatctacaacaacaaaatcc 236
             ||||||||||| ||||||||||||
Sbjct: 21531 tcttcatctaccacaacaaaatcc 21554
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 97       tatcacagatgaaaagaaaaggag 120
                ||||||| ||||||||||||||||
Sbjct: 28659938 tatcacatatgaaaagaaaaggag 28659915
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    caacaaaatcccatccaacc 245
              ||||||||||||||||||||
Sbjct: 157785 caacaaaatcccatccaacc 157766
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 97       tatcacagatgaaaagaaaaggag 120
                ||||||| ||||||||||||||||
Sbjct: 28751262 tatcacatatgaaaagaaaaggag 28751239
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>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete
             sequence
          Length = 158839

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 97    tatcacagatgaaaagaaaaggag 120
             ||||||| ||||||||||||||||
Sbjct: 38958 tatcacatatgaaaagaaaaggag 38981
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>emb|CR942285.1| Escherichia coli plasmid pCoo
          Length = 98396

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   aataataacttacataaaac 208
             ||||||||||||||||||||
Sbjct: 68588 aataataacttacataaaac 68569


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,448,226
Number of Sequences: 3902068
Number of extensions: 3448226
Number of successful extensions: 60896
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60710
Number of HSP's gapped (non-prelim): 184
length of query: 330
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 308
effective length of database: 17,147,199,772
effective search space: 5281337529776
effective search space used: 5281337529776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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