ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl01h07 |
|---|---|
| Clone Library Name | barley_pub |
>LEG_ANTCR (P22031) D-galactoside-specific lectin (Sea urchin egg lectin)| (SUEL) Length = 105 Score = 54.3 bits (129), Expect = 7e-08 Identities = 23/48 (47%), Positives = 30/48 (62%) Frame = -2 Query: 393 KCHASSTLALVSEACVGNSECTISVSNDIFGDPCPRVVKDLAVEAECS 250 KC +S++ +V +C G S CT+ SN +FGDPCP K LAV CS Sbjct: 56 KCRSSNSQQVVENSCEGKSSCTVLASNSVFGDPCPGTAKYLAVTYICS 103
>LPHN3_HUMAN (Q9HAR2) Latrophilin-3 precursor (Calcium-independent| alpha-latrotoxin receptor 3) (Lectomedin-3) Length = 1447 Score = 50.1 bits (118), Expect = 1e-06 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%) Frame = -2 Query: 393 KCHASSTLALVSEACVGNSECTISVSNDIFGDPCPRVVKDLAVEAECSPSSATKEARDEM 214 +C+ ++S+ C ++C + D+F DPCP K L V+ EC P ++ Sbjct: 77 RCYLPDAYKIMSQRCNNRTQCAVVAGPDVFPDPCPGTYKYLEVQYECVPYKVEQKV---- 132 Query: 213 *CGILVTSWCKGAFRSIH-----SCSWCWCKD 133 L KG ++S H S WCKD Sbjct: 133 ---FLCPGLLKGVYQSEHLFESDHQSGAWCKD 161
>LPHN3_BOVIN (O97827) Latrophilin-3 precursor| Length = 1580 Score = 50.1 bits (118), Expect = 1e-06 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%) Frame = -2 Query: 393 KCHASSTLALVSEACVGNSECTISVSNDIFGDPCPRVVKDLAVEAECSPSSATKEARDEM 214 +C+ ++S+ C ++C + D+F DPCP K L V+ EC P ++ Sbjct: 145 RCYLPDAYKIMSQRCNNRTQCAVVAGPDVFPDPCPGTYKYLEVQYECVPYKVEQKV---- 200 Query: 213 *CGILVTSWCKGAFRSIH-----SCSWCWCKD 133 L KG ++S H S WCKD Sbjct: 201 ---FLCPGLLKGVYQSEHLFESDHQSGAWCKD 229
>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) Length = 835 Score = 47.4 bits (111), Expect = 8e-06 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = -2 Query: 396 GKCHASSTLALVSEACVGNSECTISVSNDIF-GDPCPRVVKDLAVEAECS 250 G CHA + + CVG C++ V+ + F GDPC V+K L+VEA CS Sbjct: 786 GSCHAPRSYDAFKKNCVGKESCSVQVTPENFGGDPCRNVLKKLSVEAICS 835
>SAL_SILAS (Q9PVW8) Rhamnose-binding lectin precursor (SAL) (RBL) (Roe lectin)| Length = 308 Score = 45.4 bits (106), Expect = 3e-05 Identities = 20/47 (42%), Positives = 26/47 (55%) Frame = -2 Query: 390 CHASSTLALVSEACVGNSECTISVSNDIFGDPCPRVVKDLAVEAECS 250 C+A++TL V+ C G CT+ N IF DPC VK L V C+ Sbjct: 167 CYAANTLTTVAGLCNGKKSCTVEALNTIFSDPCSGTVKYLTVTYICT 213 Score = 45.1 bits (105), Expect = 4e-05 Identities = 20/46 (43%), Positives = 25/46 (54%) Frame = -2 Query: 390 CHASSTLALVSEACVGNSECTISVSNDIFGDPCPRVVKDLAVEAEC 253 C+ S TL V+ C S CTI +N+ FGDPCP K L + C Sbjct: 262 CYTSDTLNKVAAGCDHLSTCTIPANNNFFGDPCPNTYKYLRIVYAC 307
>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 832 Score = 44.7 bits (104), Expect = 5e-05 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 6/54 (11%) Frame = -2 Query: 396 GKCHASSTLALVSEA-----CVGNSECTISVSNDIFG-DPCPRVVKDLAVEAEC 253 G CHA + + CVG C+++V+ ++FG DPCP +K LAVEA C Sbjct: 778 GSCHAHKSYDAFEQEGLMQNCVGQEFCSVNVAPEVFGGDPCPGTMKKLAVEAIC 831
>LPHN2_BOVIN (O97817) Latrophilin-2 precursor (Calcium-independent| alpha-latrotoxin receptor 2) Length = 1478 Score = 43.5 bits (101), Expect = 1e-04 Identities = 23/86 (26%), Positives = 36/86 (41%) Frame = -2 Query: 390 CHASSTLALVSEACVGNSECTISVSNDIFGDPCPRVVKDLAVEAECSPSSATKEARDEM* 211 C+ ++++ C ++C + +D+F DPCP K L V+ EC P K Sbjct: 84 CYLPDAFKIMTQRCNNRTQCIVVTGSDVFPDPCPGTYKYLEVQYECVPYMEQKVFVCPGT 143 Query: 210 CGILVTSWCKGAFRSIHSCSWCWCKD 133 +V S C + WCKD Sbjct: 144 LKAIVDSPC---IYEAEQKAGAWCKD 166
>LPHN2_RAT (O88923) Latrophilin-2 precursor (Calcium-independent| alpha-latrotoxin receptor 2) (CIRL-2) Length = 1487 Score = 43.5 bits (101), Expect = 1e-04 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 9/95 (9%) Frame = -2 Query: 390 CHASSTLALVSEACVGNSECTISVSNDIFGDPCPRVVKDLAVEAECSPSSATKEARDEM* 211 C+ ++++ C ++C + +D+F DPCP K L V+ EC P K Sbjct: 84 CYLPDAFKIMTQRCNNRTQCVVVTGSDVFPDPCPGTYKYLEVQYECVPYMEQK------- 136 Query: 210 CGILVTSWCKGAFRSI---------HSCSWCWCKD 133 + V C G ++I + WCKD Sbjct: 137 --VFV---CPGTLKAIVDSPSIYEAEQKAGAWCKD 166
>LPHN2_HUMAN (O95490) Latrophilin-2 precursor (Calcium-independent| alpha-latrotoxin receptor 2) (Latrophilin homolog 1) (Lectomedin-1) Length = 1459 Score = 42.7 bits (99), Expect = 2e-04 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = -2 Query: 390 CHASSTLALVSEACVGNSECTISVSNDIFGDPCPRVVKDLAVEAECSP 247 C+ ++++ C ++C + +D+F DPCP K L V+ EC P Sbjct: 84 CYLPDAFKIMTQRCNNRTQCIVVTGSDVFPDPCPGTYKYLEVQYECVP 131
>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin| receptor 1) (Lectomedin-2) (Fragment) Length = 1406 Score = 42.0 bits (97), Expect = 4e-04 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = -2 Query: 393 KCHASSTLALVSEACVGNSECTISVSNDIFGDPCPRVVKDLAVEAECSP 247 +C+ ++S+ C ++C + +D F DPCP K L V+ +C P Sbjct: 22 QCYLPDAFKIMSQRCNNRTQCVVVAGSDAFPDPCPGTYKYLEVQYDCVP 70
>LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (Lectomedin-2) Length = 1474 Score = 42.0 bits (97), Expect = 4e-04 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = -2 Query: 393 KCHASSTLALVSEACVGNSECTISVSNDIFGDPCPRVVKDLAVEAECSP 247 +C+ ++S+ C ++C + +D F DPCP K L V+ +C P Sbjct: 82 QCYLPDAFKIMSQRCNNRTQCVVVAGSDAFPDPCPGTYKYLEVQYDCVP 130
>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) Length = 1472 Score = 42.0 bits (97), Expect = 4e-04 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = -2 Query: 393 KCHASSTLALVSEACVGNSECTISVSNDIFGDPCPRVVKDLAVEAECSP 247 +C+ ++S+ C ++C + +D F DPCP K L V+ +C P Sbjct: 82 QCYLPDAFKIMSQRCNNRTQCVVVAGSDAFPDPCPGTYKYLEVQYDCVP 130
>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (CIRL-1) Length = 1515 Score = 42.0 bits (97), Expect = 4e-04 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = -2 Query: 393 KCHASSTLALVSEACVGNSECTISVSNDIFGDPCPRVVKDLAVEAECSP 247 +C+ ++S+ C ++C + +D F DPCP K L V+ +C P Sbjct: 82 QCYLPDAFKIMSQRCNNRTQCVVVAGSDAFPDPCPGTYKYLEVQYDCVP 130
>CU063_PANTR (Q68US5) Protein C21orf63 homolog precursor| Length = 441 Score = 40.0 bits (92), Expect = 0.001 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -2 Query: 390 CHASSTLALVSEACVGNSECTISVSNDIFGDPC-PRVVKDLAVEAECSPSS 241 C + S L ++S C G C I V+N FG PC P V K L V C P + Sbjct: 213 CLSYSALQVLSRRCYGKQRCKIIVNNHHFGSPCLPGVKKYLTVTYACVPKN 263
>CU063_HUMAN (P58658) Protein C21orf63 precursor (SUE21)| Length = 441 Score = 40.0 bits (92), Expect = 0.001 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -2 Query: 390 CHASSTLALVSEACVGNSECTISVSNDIFGDPC-PRVVKDLAVEAECSPSS 241 C + S L ++S C G C I V+N FG PC P V K L V C P + Sbjct: 213 CLSYSALQVLSRRCYGKQRCKIIVNNHHFGSPCLPGVKKYLTVTYACVPKN 263
>CU063_MOUSE (P58659) Protein C21orf63 homolog precursor| Length = 440 Score = 37.4 bits (85), Expect = 0.009 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = -2 Query: 390 CHASSTLALVSEACVGNSECTISVSNDIFGDPC-PRVVKDLAVEAECSPSS 241 C + + L ++S C G C + V N FG PC P V K L V C P + Sbjct: 213 CLSYTALQVLSRRCYGKQRCKVLVDNYHFGSPCLPGVKKYLTVAYACVPKN 263
>BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 828 Score = 34.7 bits (78), Expect = 0.056 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = -2 Query: 396 GKCH-ASSTLALVSEACVGNSECTISVSNDIFGD--PCPRVVKDLAVEAEC 253 G C A + +V++ CVG CT++VS+ FG C K L VE EC Sbjct: 778 GSCEGAKDAVKVVAKECVGKLNCTMNVSSHKFGSNLDCGDSPKRLFVEVEC 828
>ATG12_NEUCR (Q7S083) Autophagy-related protein 12 (Autophagy-related| ubiquitin-like modifier atg-12) Length = 157 Score = 31.6 bits (70), Expect = 0.48 Identities = 23/63 (36%), Positives = 32/63 (50%) Frame = +2 Query: 206 PHHISSRASLVADDGEHSASTAKSLTTRGHGSPNISFETLIVHSLLPTHASDTKARVLEA 385 P H ++ SLV DD ++STA S G SPN+ T+ ++L T D A + EA Sbjct: 6 PLHGTASPSLVHDDNNPNSSTA-SPVLEGRDSPNLPL-TMTASTVLMTLPRDATAALAEA 63 Query: 386 WHF 394 F Sbjct: 64 GTF 66
>HTPG_RALSO (Q8Y0Q3) Chaperone protein htpG (Heat shock protein htpG) (High| temperature protein G) Length = 640 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 200 RIPHHISSRAS-LVADDGEHSASTAKSLTTRGHGSPNISFETLIVHSLLPTHASDTKARV 376 RI H ++ S LVAD+G+ S + A+ L G +P +T V L P H K + Sbjct: 537 RITHRLTDSPSCLVADEGDISGTLARLLKQAGQKAP----DTKPVLELNPAHPLVRKLAL 592 Query: 377 LEA 385 LE+ Sbjct: 593 LES 595
>HMT1_ARATH (Q9SDL7) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (AtHMT-1) Length = 326 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = +2 Query: 134 SLHQHHEQLWIERNAPLHQLVTRIPHHISSRASLVADDGEHSASTAKSLTTRGHGSPNIS 313 SL Q +L +E + V+++ H +RA + A G + A A GH N+S Sbjct: 94 SLLQKSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYGAYLADGSEYSGHYGENVS 153 Query: 314 FETL 325 + L Sbjct: 154 LDKL 157
>CHSD_PETHY (P22925) Chalcone synthase D (EC 2.3.1.74) (Naringenin-chalcone| synthase D) Length = 419 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%) Frame = +2 Query: 212 HISSRASLVADDGEHSASTAKSLTTRGHG---------SPNISFETLIVHSL 340 ++SS + L D +ST K T G G P I+FET+++HS+ Sbjct: 336 NMSSASILFVLDEMRKSSTQKGFDTTGEGLKWGVLIGFGPGITFETIVLHSV 387
>IGS4B_HUMAN (Q8N126) Immunoglobulin superfamily member 4B precursor| (Nectin-like protein 1) (TSLC1-like protein 1) (Synaptic cell adhesion molecule 3) (Brain immunoglobulin receptor) Length = 398 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 9/42 (21%) Frame = +2 Query: 188 QLVTRIPHHISSRASLV--ADDGEHSAS-------TAKSLTT 286 QLVT PH +S S V AD+GE++ S TAKSL T Sbjct: 84 QLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVT 125
>BMP2_CHICK (Q90751) Bone morphogenetic protein 2 precursor (BMP-2) (Fragment)| Length = 353 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/67 (31%), Positives = 27/67 (40%) Frame = +2 Query: 191 LVTRIPHHISSRASLVADDGEHSASTAKSLTTRGHGSPNISFETLIVHSLLPTHASDTKA 370 L TR+ HH +S+ E S T L HG PN F +VH AS Sbjct: 149 LDTRLVHHNASK-------WESSDVTPAVLRWIAHGQPNHGFVVEVVHLDKENSASKRHV 201 Query: 371 RVLEAWH 391 R+ + H Sbjct: 202 RISRSLH 208
>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial precursor (EC| 2.7.7.6) (MtRPOL) Length = 1207 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 174 FRSIHSCSWCWCKDNPTSEEIRTAKQTNKQTHTTPIVPSL 55 F S+H C W D PT E+ ++ + H+ PI+ L Sbjct: 1116 FVSVHDCFWTHAADIPTMNEV--CREQFVRLHSQPILEDL 1153
>SYN_XYLFT (Q87A82) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 128 GLSLHQHHEQLWIERNAPLHQLVTRIPHHISSRASLVADDGEHSAS 265 GL L HE+ E++ +VT P HI + + DDG+ A+ Sbjct: 334 GLDLQTEHERWLTEKHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAA 379
>SYN_XYLFA (Q9PAF5) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 128 GLSLHQHHEQLWIERNAPLHQLVTRIPHHISSRASLVADDGEHSAS 265 GL L HE+ E++ +VT P HI + + DDG+ A+ Sbjct: 334 GLDLQTEHERWLTEKHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAA 379
>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2330 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -2 Query: 210 CGILVTSWCKGAFRSIHSCSWCWCKDNPT 124 CG +T C +S H C WC +DNPT Sbjct: 547 CGGFLT--CHECLQS-HECGWCGNEDNPT 572
>TBL1X_HUMAN (O60907) F-box-like/WD-repeat protein TBL1X (Transducin beta-like| 1X protein) (Transducin-beta-like 1, X-linked) (SMAP55) Length = 526 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = +2 Query: 209 HHISSRASLVADDGEHSASTAKSLTTRGHGSPNISFETLIVHSLLPTHASDTKARV 376 H +++ A + DGE ++K+ RGH S V LL + + D+ AR+ Sbjct: 152 HSVNNHAKPMEIDGEVEIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARI 207
>YK13_CAEEL (P34337) Putative tyrosine-protein phosphatase C15H7.3 (EC| 3.1.3.48) Length = 398 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = -2 Query: 174 FRSIHSCSWCWCKDNPTSEEIR 109 F ++H CW K+N T+EE++ Sbjct: 366 FGTVHRSMACWFKNNSTNEEVQ 387
>SYN_XANCP (Q8PAC4) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 464 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +2 Query: 128 GLSLHQHHEQLWIERNAPLHQLVTRIPHHISSRASLVADDGEHSAS 265 GL L HE+ E + +VT P HI + + DDG+ A+ Sbjct: 332 GLDLQTEHERWLTEEHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAA 377
>SYN_XANAC (Q8PM16) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 464 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +2 Query: 128 GLSLHQHHEQLWIERNAPLHQLVTRIPHHISSRASLVADDGEHSAS 265 GL L HE+ E + +VT P HI + + DDG+ A+ Sbjct: 332 GLDLQTEHERWLTEEHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAA 377
>CLAT_CAEEL (P32756) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)| (Choline acetylase) (ChAT) Length = 627 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%) Frame = +1 Query: 106 CPYFFT-SRIIFTPT-----PRTTMDRAKRSLAPACHE 201 CPY R+IF PT PRT + K+SLA A + Sbjct: 583 CPYNIQPDRVIFAPTAFRSDPRTDLQHFKKSLAGAMRD 620
>M3K14_MOUSE (Q9WUL6) Mitogen-activated protein kinase kinase kinase 14 (EC| 2.7.11.25) (NF-kappa beta-inducing kinase) (Serine/threonine-protein kinase NIK) Length = 942 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = -2 Query: 273 LAVEAECSPSSATKEARDEM*CGILVTSWCKGAFRSIHSCSWCWCKDNPT 124 L+ ++E +PS A++ +RD + G V SW A SCS + PT Sbjct: 800 LSDDSEKNPSKASQSSRDTLSSG--VHSWNSQAEARTCSCSTALARGRPT 847 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,215,384 Number of Sequences: 219361 Number of extensions: 1054537 Number of successful extensions: 3319 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3317 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
