ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
2dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
3ref|XM_463975.1| Oryza sativa (japonica cultivar-group), mRNA 109 8e-21
4gb|AC010635.6| Homo sapiens chromosome 5 clone CTD-2324F15, comp... 46 0.094
5ref|NM_125527.1| Arabidopsis thaliana unknown protein AT5G61340 ... 44 0.37
6gb|AC132440.3| Mus musculus BAC clone RP23-239I24 from chromosom... 44 0.37
7gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, com... 44 0.37
8gb|AY042805.2| Arabidopsis thaliana Unknown protein (MFB13.11) m... 44 0.37
9gb|AC012336.9|AC012336 Homo sapiens chromosome 17, clone CTD-223... 44 0.37
10dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.37
11gb|AC156987.7| Mus musculus chromosome 7, clone RP23-78K13, comp... 42 1.5
12gb|AY809548.1| Schistosoma japonicum SJCHGC05584 protein mRNA, p... 42 1.5
13gb|AC113173.2| Homo sapiens chromosome 1 clone RP4-724N10, compl... 42 1.5
14emb|BX629340.6| Zebrafish DNA sequence from clone DKEY-183O11 in... 42 1.5
15emb|AL929533.12| Zebrafish DNA sequence from clone DKEY-18E17 in... 42 1.5
16emb|AL935152.9| Mouse DNA sequence from clone RP24-387M5 on chro... 42 1.5
17ref|NM_197888.1| Oryza sativa (japonica cultivar-group) myosin-l... 40 5.8
18gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.8
19gb|AC134586.4| Mus musculus BAC clone RP23-304K3 from chromosome... 40 5.8
20gb|AC128571.4| Rattus norvegicus 6 BAC CH230-424O13 (Children's ... 40 5.8
21gb|AC131756.3| Mus musculus BAC clone RP24-199J23 from chromosom... 40 5.8
22gb|AC103613.7| Mus musculus chromosome 14, clone RP24-75B12, com... 40 5.8
23gb|AC069292.12| Homo sapiens BAC clone RP11-648L18 from 7, compl... 40 5.8
24emb|AL451138.5| Human DNA sequence from clone RP11-152H3 on chro... 40 5.8
25ref|XM_786313.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.8
26emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
27emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 40 5.8
28gb|AC010320.10| Homo sapiens chromosome 19 clone CTD-2525I3, com... 40 5.8
29dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 5.8
30gb|AC018929.12| Oryza sativa chromosome 10 BAC OSJNBa0027L23 gen... 40 5.8
31ref|NM_001024867.1| Rattus norvegicus similar to DNA segment, Ch... 40 5.8
32gb|BC098069.1| Rattus norvegicus similar to DNA segment, Chr 8, ... 40 5.8
33gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 40 5.8
34dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
35dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
36gb|AC009957.11| Homo sapiens BAC clone RP11-285H23 from 2, compl... 40 5.8
37gb|DQ014508.1| Eucalyptus grandis cellulose synthase 4 (CesA4) m... 40 5.8
38dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
39emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.8
40gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
41emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
42emb|CR450834.5| Zebrafish DNA sequence from clone CH211-237B9 in... 40 5.8
43gb|AC170600.2| Mus musculus BAC clone RP23-300L16 from chromosom... 40 5.8
44emb|AJ421481.1| Bos taurus X-inactivation center region, Jpx and... 40 5.8
45emb|AL590876.20| Mouse DNA sequence from clone RP23-53K18 on chr... 40 5.8 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  119 bits (60), Expect = 8e-24
 Identities = 147/176 (83%)
 Strand = Plus / Minus

                                                                           
Query: 252     attacttatacaaatgaaatggccttctgatcatgtggtcgcaaggatgtattgttgtac 311
               ||||||||||||||||| ||| | || ||||||  || |||||| | |  |||||| || 
Sbjct: 1436026 attacttatacaaatgagatgactttatgatcagttgatcgcaacgctaaattgttatat 1435967

                                                                           
Query: 312     aacctcatagtgtaccaagtgggatagaacccgtttcggtacattgcctccatccacctt 371
               | ||||||||||||||| |||||||||||||| ||||||| |||||| |||||||| || 
Sbjct: 1435966 atcctcatagtgtaccatgtgggatagaacccatttcggtgcattgcttccatccatctc 1435907

                                                                       
Query: 372     tcagcctcacttctgctgccatgcttgcagaagccatgtaccattatatcaaaagt 427
               || ||||||   |||   | || |||||||||||||||||||||||||||||||||
Sbjct: 1435906 tcggcctcatccctgtcactattcttgcagaagccatgtaccattatatcaaaagt 1435851



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 251      tattacttatacaaatgaaa 270
                ||||||||||||||||||||
Sbjct: 34931186 tattacttatacaaatgaaa 34931167
to top
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0482F12
          Length = 147735

 Score =  119 bits (60), Expect = 8e-24
 Identities = 147/176 (83%)
 Strand = Plus / Minus

                                                                          
Query: 252    attacttatacaaatgaaatggccttctgatcatgtggtcgcaaggatgtattgttgtac 311
              ||||||||||||||||| ||| | || ||||||  || |||||| | |  |||||| || 
Sbjct: 117298 attacttatacaaatgagatgactttatgatcagttgatcgcaacgctaaattgttatat 117239

                                                                          
Query: 312    aacctcatagtgtaccaagtgggatagaacccgtttcggtacattgcctccatccacctt 371
              | ||||||||||||||| |||||||||||||| ||||||| |||||| |||||||| || 
Sbjct: 117238 atcctcatagtgtaccatgtgggatagaacccatttcggtgcattgcttccatccatctc 117179

                                                                      
Query: 372    tcagcctcacttctgctgccatgcttgcagaagccatgtaccattatatcaaaagt 427
              || ||||||   |||   | || |||||||||||||||||||||||||||||||||
Sbjct: 117178 tcggcctcatccctgtcactattcttgcagaagccatgtaccattatatcaaaagt 117123
to top
>ref|XM_463975.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2712

 Score =  109 bits (55), Expect = 8e-21
 Identities = 142/171 (83%)
 Strand = Plus / Minus

                                                                        
Query: 257  ttatacaaatgaaatggccttctgatcatgtggtcgcaaggatgtattgttgtacaacct 316
            |||||||||||| ||| | || ||||||  || |||||| | |  |||||| || | |||
Sbjct: 2712 ttatacaaatgagatgactttatgatcagttgatcgcaacgctaaattgttatatatcct 2653

                                                                        
Query: 317  catagtgtaccaagtgggatagaacccgtttcggtacattgcctccatccacctttcagc 376
            |||||||||||| |||||||||||||| ||||||| |||||| |||||||| || || ||
Sbjct: 2652 catagtgtaccatgtgggatagaacccatttcggtgcattgcttccatccatctctcggc 2593

                                                               
Query: 377  ctcacttctgctgccatgcttgcagaagccatgtaccattatatcaaaagt 427
            ||||   |||   | || |||||||||||||||||||||||||||||||||
Sbjct: 2592 ctcatccctgtcactattcttgcagaagccatgtaccattatatcaaaagt 2542
to top
>gb|AC010635.6| Homo sapiens chromosome 5 clone CTD-2324F15, complete sequence
          Length = 81252

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 211   gactttcagatcaacaagcagatgcggggag 241
             |||||||||||||||| ||||||| ||||||
Sbjct: 72541 gactttcagatcaacaggcagatgaggggag 72511
to top
>ref|NM_125527.1| Arabidopsis thaliana unknown protein AT5G61340 mRNA, complete cds
          Length = 1114

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 244  atgtaattattacttatacaaa 265
            ||||||||||||||||||||||
Sbjct: 1072 atgtaattattacttatacaaa 1093
to top
>gb|AC132440.3| Mus musculus BAC clone RP23-239I24 from chromosome 8, complete sequence
          Length = 183218

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 151   tagaaaatgaatccaagagcgaggtt 176
             ||||||||||||||||||| ||||||
Sbjct: 34726 tagaaaatgaatccaagagagaggtt 34751
to top
>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence
          Length = 181022

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 371   ttcagcctcacttctgctgcca 392
             ||||||||||||||||||||||
Sbjct: 30131 ttcagcctcacttctgctgcca 30152
to top
>gb|AY042805.2| Arabidopsis thaliana Unknown protein (MFB13.11) mRNA, complete cds
          Length = 1114

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 244  atgtaattattacttatacaaa 265
            ||||||||||||||||||||||
Sbjct: 1072 atgtaattattacttatacaaa 1093
to top
>gb|AC012336.9|AC012336 Homo sapiens chromosome 17, clone CTD-2236G12, complete sequence
          Length = 40405

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 371  ttcagcctcacttctgctgcca 392
            ||||||||||||||||||||||
Sbjct: 7255 ttcagcctcacttctgctgcca 7234
to top
>dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFB13
          Length = 80376

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 244   atgtaattattacttatacaaa 265
             ||||||||||||||||||||||
Sbjct: 32604 atgtaattattacttatacaaa 32583
to top
>gb|AC156987.7| Mus musculus chromosome 7, clone RP23-78K13, complete sequence
          Length = 231140

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 73     aaatatctcagttctctggaa 93
              |||||||||||||||||||||
Sbjct: 156464 aaatatctcagttctctggaa 156444
to top
>gb|AY809548.1| Schistosoma japonicum SJCHGC05584 protein mRNA, partial cds
          Length = 1380

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 265 atgaaatggccttctgatcat 285
           |||||||||||||||||||||
Sbjct: 529 atgaaatggccttctgatcat 509
to top
>gb|AC113173.2| Homo sapiens chromosome 1 clone RP4-724N10, complete sequence
          Length = 149950

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 40    taataagaaaacaatagcaaaaata 64
             |||||| ||||||||||||||||||
Sbjct: 98989 taataataaaacaatagcaaaaata 99013
to top
>emb|BX629340.6| Zebrafish DNA sequence from clone DKEY-183O11 in linkage group 9,
             complete sequence
          Length = 172090

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 50    acaatagcaaaaatatgacta 70
             |||||||||||||||||||||
Sbjct: 12652 acaatagcaaaaatatgacta 12672
to top
>emb|AL929533.12| Zebrafish DNA sequence from clone DKEY-18E17 in linkage group 5, complete
              sequence
          Length = 251370

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     acaatagcaaaaatatgacta 70
              |||||||||||||||||||||
Sbjct: 247545 acaatagcaaaaatatgacta 247565
to top
>emb|AL935152.9| Mouse DNA sequence from clone RP24-387M5 on chromosome 2, complete
             sequence
          Length = 98020

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 136   gacctaacaatgaagtagaaa 156
             |||||||||||||||||||||
Sbjct: 36794 gacctaacaatgaagtagaaa 36814
to top
>ref|NM_197888.1| Oryza sativa (japonica cultivar-group) myosin-like protein
            (OSJNBa0027L23.22), mRNA
          Length = 2832

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 157  atgaatccaagagcgaggtt 176
            ||||||||||||||||||||
Sbjct: 1472 atgaatccaagagcgaggtt 1491
to top
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     tcccttgtgtaataagaaaa 50
              ||||||||||||||||||||
Sbjct: 988692 tcccttgtgtaataagaaaa 988711
to top
>gb|AC134586.4| Mus musculus BAC clone RP23-304K3 from chromosome 9, complete sequence
          Length = 166474

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     gtaataagaaaacaatagca 58
              ||||||||||||||||||||
Sbjct: 104179 gtaataagaaaacaatagca 104198
to top
>gb|AC128571.4| Rattus norvegicus 6 BAC CH230-424O13 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 194127

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    ttcagcctcacttctgctgc 390
              ||||||||||||||||||||
Sbjct: 107841 ttcagcctcacttctgctgc 107860
to top
>gb|AC131756.3| Mus musculus BAC clone RP24-199J23 from chromosome 19, complete
             sequence
          Length = 175604

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   atgaagtagaaaatgaatcc 164
             ||||||||||||||||||||
Sbjct: 54820 atgaagtagaaaatgaatcc 54801
to top
>gb|AC103613.7| Mus musculus chromosome 14, clone RP24-75B12, complete sequence
          Length = 191158

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 247    taattattacttatacaaatgaaa 270
              |||||||| |||||||||||||||
Sbjct: 165285 taattatttcttatacaaatgaaa 165308
to top
>gb|AC069292.12| Homo sapiens BAC clone RP11-648L18 from 7, complete sequence
          Length = 159624

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   agatatgtaattattactta 259
             ||||||||||||||||||||
Sbjct: 59606 agatatgtaattattactta 59587
to top
>emb|AL451138.5| Human DNA sequence from clone RP11-152H3 on chromosome 9, complete
             sequence
          Length = 117273

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    agaaaacaatagcaaaaata 64
             ||||||||||||||||||||
Sbjct: 55758 agaaaacaatagcaaaaata 55777
to top
>ref|XM_786313.1| PREDICTED: Strongylocentrotus purpuratus similar to CG12252-PA
            (LOC586535), mRNA
          Length = 1974

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 380  acttctgctgccatgcttgc 399
            ||||||||||||||||||||
Sbjct: 1392 acttctgctgccatgcttgc 1373
to top
>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
             complete sequence
          Length = 190432

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   tgccatgcttgcagaagcca 407
             ||||||||||||||||||||
Sbjct: 99628 tgccatgcttgcagaagcca 99609
to top
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   gaaaacttctcaaacaacta 135
             ||||||||||||||||||||
Sbjct: 63482 gaaaacttctcaaacaacta 63463
to top
>gb|AC010320.10| Homo sapiens chromosome 19 clone CTD-2525I3, complete sequence
          Length = 220458

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 135    agacctaacaatgaagtagaaaat 158
              |||| |||||||||||||||||||
Sbjct: 131128 agacttaacaatgaagtagaaaat 131105
to top
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 251     tattacttatacaaatgaaa 270
               ||||||||||||||||||||
Sbjct: 2329672 tattacttatacaaatgaaa 2329653
to top
>gb|AC018929.12| Oryza sativa chromosome 10 BAC OSJNBa0027L23 genomic sequence, complete
              sequence
          Length = 143961

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    atgaatccaagagcgaggtt 176
              ||||||||||||||||||||
Sbjct: 124829 atgaatccaagagcgaggtt 124848
to top
>ref|NM_001024867.1| Rattus norvegicus similar to DNA segment, Chr 8, ERATO Doi 531,
            expressed (MGC116266), mRNA
          Length = 1743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 252  attacttatacaaatgaaat 271
            ||||||||||||||||||||
Sbjct: 1149 attacttatacaaatgaaat 1168
to top
>gb|BC098069.1| Rattus norvegicus similar to DNA segment, Chr 8, ERATO Doi 531,
            expressed, mRNA (cDNA clone MGC:116266 IMAGE:7444656),
            complete cds
          Length = 1743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 252  attacttatacaaatgaaat 271
            ||||||||||||||||||||
Sbjct: 1149 attacttatacaaatgaaat 1168
to top
>gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-31g23, complete
             sequence
          Length = 113812

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    taataagaaaacaatagcaaaaat 63
             |||||||||||||| |||||||||
Sbjct: 29657 taataagaaaacaaaagcaaaaat 29634
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 116      gaaaacttctcaaacaacta 135
                ||||||||||||||||||||
Sbjct: 35298666 gaaaacttctcaaacaacta 35298685



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 388      tgccatgcttgcagaagcca 407
                ||||||||||||||||||||
Sbjct: 34188246 tgccatgcttgcagaagcca 34188227
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 157      atgaatccaagagcgaggtt 176
                ||||||||||||||||||||
Sbjct: 22472406 atgaatccaagagcgaggtt 22472425
to top
>gb|AC009957.11| Homo sapiens BAC clone RP11-285H23 from 2, complete sequence
          Length = 191119

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    cctaacaatgaagtagaaaa 157
              ||||||||||||||||||||
Sbjct: 139027 cctaacaatgaagtagaaaa 139046
to top
>gb|DQ014508.1| Eucalyptus grandis cellulose synthase 4 (CesA4) mRNA, complete cds
          Length = 3782

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 178  aacaatacattacctgttttggca 201
            |||||||||||| |||||||||||
Sbjct: 3702 aacaatacattaactgttttggca 3679
to top
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_E04
          Length = 118192

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   tattacttatacaaatgaaa 270
             ||||||||||||||||||||
Sbjct: 90683 tattacttatacaaatgaaa 90664
to top
>emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete
             sequence
          Length = 101125

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   tgccatgcttgcagaagcca 407
             ||||||||||||||||||||
Sbjct: 38926 tgccatgcttgcagaagcca 38907
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 157      atgaatccaagagcgaggtt 176
                ||||||||||||||||||||
Sbjct: 22484874 atgaatccaagagcgaggtt 22484893
to top
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
             complete sequence
          Length = 173770

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   gaaaacttctcaaacaacta 135
             ||||||||||||||||||||
Sbjct: 94511 gaaaacttctcaaacaacta 94530
to top
>emb|CR450834.5| Zebrafish DNA sequence from clone CH211-237B9 in linkage group 11,
             complete sequence
          Length = 137302

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   atatgtaattattacttata 261
             ||||||||||||||||||||
Sbjct: 55917 atatgtaattattacttata 55936
to top
>gb|AC170600.2| Mus musculus BAC clone RP23-300L16 from chromosome 14, complete sequence
          Length = 216861

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 247    taattattacttatacaaatgaaa 270
              |||||||| |||||||||||||||
Sbjct: 115322 taattatttcttatacaaatgaaa 115345
to top
>emb|AJ421481.1| Bos taurus X-inactivation center region, Jpx and Xist genes
          Length = 233345

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     aagaaaacaatagcaaaaat 63
              ||||||||||||||||||||
Sbjct: 197784 aagaaaacaatagcaaaaat 197803
to top
>emb|AL590876.20| Mouse DNA sequence from clone RP23-53K18 on chromosome X, complete
             sequence
          Length = 67297

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    taagaaaacaatagcaaaaa 62
             ||||||||||||||||||||
Sbjct: 40926 taagaaaacaatagcaaaaa 40945


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,705,629
Number of Sequences: 3902068
Number of extensions: 4705629
Number of successful extensions: 95571
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95347
Number of HSP's gapped (non-prelim): 224
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top