>KLF13_HUMAN (Q9Y2Y9) Krueppel-like factor 13 (Transcription factor BTEB3)|
           (Basic transcription element-binding protein 3)
           (BTE-binding protein 3) (RANTES factor of late activated
           T-lymphocytes 1) (RFLAT-1) (Transcription factor NSLP1)
           (Novel Sp1-like zin
          Length = 288

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +1

Query: 100 PPGTHQPRWKPGVAEVGVLGIYTDERKERTNHSICQKPMHKHKTHSAGRSHVKGRSLFLS 279
           P    +P  +PG A  G  G+    R+ R+   + + P  KHK H AG   V G+S  L 
Sbjct: 127 PEAGLEPEREPGPAGSGEPGLRQRVRRGRSRADL-ESPQRKHKCHYAGCEKVYGKSSHLK 185

Query: 280 NHL 288
            HL
Sbjct: 186 AHL 188

>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)|
           (Basic transcription element-binding protein 3)
           (BTE-binding protein 3) (RANTES factor of late activated
           T-lymphocytes 1) (RFLAT-1) (Erythroid transcription
           factor FKLF-2)
          Length = 289

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +1

Query: 70  GGARQHSTRPPPGTHQPR----WKPGVAEVGVLGIYTDERKERTNHSICQKPMHKHKTHS 237
           G A   +  P P   +P      +PG A  G  G+    R+ R+   + + P  KHK H 
Sbjct: 114 GQAGAPAAPPSPAWSEPEAALEQEPGPAGSGEPGLRQRGRRGRSRADL-ESPQRKHKCHY 172

Query: 238 AGRSHVKGRSLFLSNHL 288
           AG   V G+S  L  HL
Sbjct: 173 AGCEKVYGKSSHLKAHL 189

>TNP2_ECOLI (P06694) Transposase for transposon Tn21|
          Length = 988

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
 Frame = +1

Query: 55  KGRNTGGARQHSTRPPPGTHQPRWKPGVAEVGVLGIYTDERKERTNHSICQKPMHKHKTH 234
           +G NT  AR+     P G  +PRW+  V         TD   +R  + +C     K+   
Sbjct: 419 RGMNTDNARKLPADAPTGFIKPRWQKLV--------MTDAGIDRAYYELCALSELKNSLR 470

Query: 235 SAGRSHVKGRSLFLS-NHLLSSPSSIRSPNTHLQAHRAAASGCRQ 366
           S G   V+G   F      L  P    S     +   A A+GC Q
Sbjct: 471 S-GDIWVQGSRQFKDFEDYLVPPEKFTSLKQSSELPLAVATGCEQ 514

>CPXP_BRAJA (Q59203) Cytochrome P450 BJ-1 (EC 1.14.14.-) (Cytochrome P450 112)|
          Length = 401

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 134 PGFHRGWWVPGGGRVECCLAPPVFRP 57
           P  H GWWV G    +  L+   FRP
Sbjct: 39  PSGHEGWWVTGYDEAKAVLSDAAFRP 64

>NUDH_THICR (Q31GX8) Probable (di)nucleoside polyphosphate hydrolase (EC|
           3.6.1.-)
          Length = 165

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
 Frame = -2

Query: 302 EGDDKRWLDKNKDRPLTCDLPAECVLC----LCIGF*HMEWFVLSFLSSVYIPSTPTSAT 135
           E  D R L + KD  LT DLP   +      +CIG   + WF+L  LS     +  T  T
Sbjct: 61  EPSDVRVLGRTKDW-LTYDLPKHLIRHYSQPVCIGQKQI-WFLLGMLSDDEKINLNTHET 118

Query: 134 PGFHRGW-----WVPGGGRVE 87
           P F  GW     WVP    VE
Sbjct: 119 PEF-EGWSWVDYWVPVQNVVE 138

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 184 RTNHSICQKPMHKHKTHSAGRSHVKGRSLFLSNHLLSSPSSIRSPNTHLQAHRAAASGC 360
           RT H++     H   T S+ RSH +  S + S+H  SS SS  S ++H  +   ++  C
Sbjct: 431 RTRHNL-----HGRSTTSSSRSHSRSPSSYSSSH-SSSSSSHSSSHSHASSPVQSSGNC 483

>TJAP1_MOUSE (Q9DCD5) Tight junction-associated protein 1 (Tight junction|
           protein 4) (Protein incorporated later into tight
           junctions)
          Length = 539

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = +1

Query: 85  HSTRPPPGTHQPRWKPGVAEVGVLGIYTDERKERTNHSICQK-------PMHKHKTHSAG 243
           HST PPP  H+ R     AE    G   DE +E  N  +  +       P  +    ++G
Sbjct: 435 HSTAPPPSPHRERGLVLPAEPD-SGFPQDEEEEMLNLPVSPEEERQSLLPDKEGTEEASG 493

Query: 244 RSHVKGRS 267
            SHV GR+
Sbjct: 494 PSHVDGRA 501

>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum|
           protein MSE55)
          Length = 391

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 160 IYTDERKERTNHSICQKPM--HKHKTHSAGRSHVKGRSLFLSNHLLSSPSSIRSPNTHL 330
           + + + K R    +   P+   +H  H      V G + FLSNH  SS S+ RSP + L
Sbjct: 24  VSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGDTSFLSNHGGSSGSTHRSPRSFL 82

>CPXP_RHISN (P55544) Cytochrome P450 BJ-1 homolog (EC 1.14.14.-)|
          Length = 400

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 134 PGFHRGWWVPGGGRVECCLAPPVFRP 57
           P  H GWWV G    +  L+   FRP
Sbjct: 38  PRGHEGWWVTGYDEAKAVLSDAAFRP 63

>ADCY7_MOUSE (P51829) Adenylate cyclase type 7 (EC 4.6.1.1) (Adenylate cyclase|
           type VII) (ATP pyrophosphate-lyase 7) (Adenylyl cyclase
           7)
          Length = 1099

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 199 WNGLFFLFFRLYIYQVLLPLQRRASIAAG 113
           W  + F  F +++   LLPL RRA+I  G
Sbjct: 123 WEQVPFFLFVVFVVYALLPLSRRAAIVVG 151

>CGAT1_HUMAN (Q8TDX6) Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 1|
           (EC 2.4.1.174) (beta4GalNAcT-1)
          Length = 532

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 103 PGTHQPRWKPGVAEVGVLGIYTDERKERTNHSICQKPMHKHK 228
           P  + P  +P  A   + GIY  ER + T + +  K  HKH+
Sbjct: 194 PAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHE 235

>YHT4_YEAST (P38838) Hypothetical 30.6 kDa protein in ACT5-YCK1 intergenic|
           region
          Length = 269

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/84 (21%), Positives = 38/84 (45%)
 Frame = +2

Query: 62  ETPAAPDNTQRDHHRVPTSRDGSPALQR*EYLVYIQTKEKKEQTIPYVKSLCTNTRHTLR 241
           ++P+A  +      R+P     +P +Q+   +  +Q+K  KE  +  +K +     + ++
Sbjct: 7   KSPSAKYHDMAGSQRIPHK---NPHIQK---VAVLQSKPNKEDALNLIKEIAHKVSYLMK 60

Query: 242 EDHMSRDGLYFYPTTSYRLLPRSV 313
           E+H     L  +     RLL  +V
Sbjct: 61  ENHFKVTNLVEFYPRDQRLLGMNV 84

>DOF33_ARATH (Q8LFV3) Dof zinc finger protein DOF3.3 (AtDOF3.3) (H-protein|
           promoter-binding factor 2a)
          Length = 448

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 75  RQTTLNATTTGYPPAAMEARRCRGRSTWYIYRRKKRKNKPFHMSKA 212
           +QTT +  T   P   +   RC+   T + Y      N+P H  KA
Sbjct: 94  QQTTPDGKTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKA 139

>THN1_WHEAT (P01544) Alpha-1-purothionin precursor (Purothionin A-II)|
           [Contains: Alpha-1-purothionin; Acidic protein]
           (Fragment)
          Length = 126

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 359 QPEAAALCACRCVFGLRIEEGDDKRWLDKNKDRPLT---CDLPAECVLC 222
           Q   A +C C+   GL   +G  K  L+ N D P T   C+L     +C
Sbjct: 38  QKLCAGVCRCKISSGLSCPKGFPKLALESNSDEPDTIEYCNLGCRSSVC 86

>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 37  RKWYSGKGRNTGGARQHSTRPPPGTHQPRWKPGVAEVGVLG 159
           R  + G+  + G   Q   R PPG   P   PG+  +G  G
Sbjct: 187 RDGFPGEKGDRGDVGQAGPRGPPGEAGPPGNPGIGSIGPKG 227

>GCM1_MOUSE (P70348) Chorion-specific transcription factor GCMa (Glial cells|
           missing homolog 1) (GCM motif protein 1) (mGCMa) (mGCM1)
          Length = 436

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 161 IPSTPTSATPGFHRGWWVPGG 99
           +PS P +A PG H  W  PGG
Sbjct: 341 VPSEPPAAQPGCHPLWSNPGG 361

>CNC_DROME (P20482) Segmentation protein cap'n'collar|
          Length = 1383

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 193  HSICQKPMHKHKTHSAGRSHVKGRSLFLSNHLLSSPSSIRSPNTHLQAHRAAASGCRQ 366
            H   Q PMH H++H     HV G            P  ++  + HLQ+ +    G +Q
Sbjct: 1321 HVPTQAPMHSHQSHGMQAQHVVGGMSQQQQQQSRLPPHLQQQH-HLQSQQQQPGGQQQ 1377

>NEUR_DROVI (Q24746) Protein neuralized|
          Length = 747

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 181 ERTNHSICQKPMHKHKTHSAGRSHVKGRSLFLSNHLLSSPSS--IRSPNTHLQAHR 342
           ++T H++ Q+ +H H  H+   +H    +   + H+L+  +S  + SP   + + +
Sbjct: 12  QQTGHNLQQQQLHHHHHHNHNHNHNAAAAAAAAAHVLAMENSELLMSPKDKMSSKK 67

>RPGF3_RAT (Q9Z1C8) Rap guanine nucleotide exchange factor 3 (cAMP-regulated|
           guanine nucleotide exchange factor I) (cAMP-GEFI)
           (Exchange factor directly activated by cAMP 1) (Epac 1)
          Length = 884

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 238 AGRSHVKGRSLFLSNHLLSS-PSSIRSPNTHLQAHRAAASG 357
           A   HV      L  HLL++ P+ IR    HL+ HR   SG
Sbjct: 50  ATTEHVHKAGKLLYRHLLATYPTLIRDRKYHLRLHRQCCSG 90

>CARY_LACPL (Q9RLS9) Carbamoyl-phosphate synthase arginine-specific large chain|
           (EC 6.3.5.5) (Carbamoyl-phosphate synthetase ammonia
           chain)
          Length = 1020

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 179 KKEQTIPYVKSLCTNTRHTLREDHMSRDGLYFYPTTSYRLLP 304
           K  Q   Y   +  N   T+  D  + D LYF P T  RL+P
Sbjct: 577 KAIQQAGYHAIIVNNNPETVSTDFSTSDKLYFEPLTIERLMP 618

>T2FB_YEAST (P41896) Transcription initiation factor IIF beta subunit (EC|
           3.6.1.-) (ATP-dependent helicase TFG2) (TFIIF-beta)
           (TFIIF medium subunit) (Transcription factor G 54 kDa
           subunit)
          Length = 400

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 80  DNTQRDHHRVPTSRDGSPALQR*EYLVYIQTKEKKEQTIPYVKSLC 217
           +N ++ +HRV T RDG     R  Y+ Y++T  KK   +  V   C
Sbjct: 182 NNRKKFNHRVMTDRDG-----RDRYIPYVKTIPKKTAIVGTVCHEC 222

>THN2_WHEAT (P32032) Alpha-2-purothionin precursor [Contains:|
           Alpha-2-purothionin; Acidic protein]
          Length = 136

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 359 QPEAAALCACRCVFGLRIEEGDDKRWLDKNKDRPLT---CDLPAECVLC 222
           Q   + +C C+   GL   +G  K  L+ N D P T   C+L     +C
Sbjct: 49  QKLCSTVCRCKLTSGLSCPKGFPKLALESNSDEPDTIEYCNLGCRSSVC 97

>RTCA_METTH (O27937) Probable RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)|
           (RNA-3'-phosphate cyclase) (RNA cyclase)
          Length = 337

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 122 RGWWVPGGGRVECCLAPPVFRPLPL 48
           RG++  GGGRV   + P   RP+ L
Sbjct: 154 RGYYPEGGGRVHAIIEPSELRPITL 178

>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC|
           3.4.23.-)]
          Length = 827

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +3

Query: 21  IMVSVSEMVQWQRPKHRRRQTTLNATTTGYPPAAMEARRCRGRSTWYIYRRKKRKNKPFH 200
           I   +SE+ + +R   +R+  T N  T        E +   GR+TW   RRK+ K +   
Sbjct: 32  IQDKLSEVKRGERVGTKRKYGTQNKYTGLSKGLEPEEKLRLGRNTWREIRRKRGKREKKK 91

Query: 201 MSKAYAQTQDTLCGKI 248
              A    + +LC  +
Sbjct: 92  DQLAEVSRKRSLCSSL 107

>IGEB_MOUSE (P03975) IgE-binding protein|
          Length = 557

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +3

Query: 21  IMVSVSEMVQWQRPKHRRRQTTLNATTTGYPPAAMEARRCRGRSTWYIYRRKKRKNKPFH 200
           I   +SE+ + +R   +R+  T N  T        E +   GR+TW   RRK+ K +   
Sbjct: 37  IQDKLSEVKRGERVGTKRKYGTQNKYTGLSKGLEPEEKLRLGRNTWREIRRKRGKREKKK 96

Query: 201 MSKAYAQTQDTLCGKI 248
              A    + +LC  +
Sbjct: 97  DQLAEVSRKRSLCSSL 112

>DCBD1_HUMAN (Q8N8Z6) Discoidin, CUB and LCCL domain-containing protein 1|
           precursor
          Length = 715

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 81  TTLNATTTGYPPAAMEARRCRGRSTWYIYRRKKRKNKPFHMSKAYAQTQDTLCGK 245
           T +N TT   P   +      G   +  +R+KK+K  P+      A+ Q T C K
Sbjct: 452 TGINITTVAIPLVLLVVLVFAGMGIFAAFRKKKKKGSPY----GSAEAQKTDCWK 502

>YLYA_BACMT (P41024) Hypothetical 14.0 kDa protein in lysA 3'region (ORF3)|
          Length = 120

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 124 WKPGVAEVGVLGIYTDERKERTNHSICQKPMHKHKTHSAGRSHVKG-RSLFLSNHLLSSP 300
           WK     +G++G+      E   H I   P H+H+    G+S VK  R ++    L+ + 
Sbjct: 47  WKEEEDIIGLIGVLVVNEYEVEIHHISVNPSHRHQ--GIGKSMVKALRDIYPDKELIPNE 104

Query: 301 SS 306
           ++
Sbjct: 105 NT 106

>ADA28_MACFA (Q9XSL6) ADAM 28 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 28) (eMDC II)
          Length = 776

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 219 QTQDTLCGKITCQG 260
           +T DT+CGK+ CQG
Sbjct: 556 KTNDTMCGKLFCQG 569

>GP151_HUMAN (Q8TDV0) Probable G-protein coupled receptor 151 (G-protein coupled|
           receptor PGR7) (GPCR-2037)
          Length = 419

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 38  GNGTVAKAETPAAPDNTQRDHHR--VPTSRDGSP 133
           G G   KAE P  PD  Q  H R  VP+ +D  P
Sbjct: 371 GKGKTEKAEIPILPDVEQFWHERDTVPSVQDNDP 404

>PDLI4_HUMAN (P50479) PDZ and LIM domain protein 4 (LIM protein RIL)|
           (Reversion-induced LIM protein)
          Length = 330

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +2

Query: 68  PAAPDNTQRDHHRV---PTSRDGSPALQR 145
           P+APD+++   HR+   P  +DGSP   R
Sbjct: 89  PSAPDDSKAQAHRIHIDPEIQDGSPTTSR 117

>NHEJ1_BRARE (Q6NV18) Nonhomologous end-joining factor 1 (Protein cernunnos)|
           (XRCC4-like factor)
          Length = 309

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +2

Query: 65  TPAAPDNTQRDHHRVPTSRDGSPALQR*EYLVYIQTKEKK----EQTIPYVKSLCTNTRH 232
           +PAA +N   DH  +  S D  P+L   E+    ++   +    +QT+P   +  +  R 
Sbjct: 236 SPAAQENHITDHQHISESTDVGPSLASQEHNNAKESGRSQVANSQQTLPLSSTAGSEDRS 295

Query: 233 TLREDHMSRDGLY 271
           T R       GL+
Sbjct: 296 TSRAKKKKAVGLF 308

>NUDH_SHIBS (Q31XF7) Probable (di)nucleoside polyphosphate hydrolase (EC|
           3.6.1.-)
          Length = 176

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 221 LCIGF*HMEWFVLSFLSSVYIPSTPTSATPGFHRGWWV 108
           +CIG    +WF+L  +S       PTS+TP F    WV
Sbjct: 91  VCIGQ-KQKWFLLQLVSGDAEIHMPTSSTPEFDGWRWV 127

>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22|
          Length = 954

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 57  RPKHRRRQTTLNATTTGYPPAAMEARRCRGRSTWYIYRRKK 179
           RP+ R R  +L+   TG PP      R   RS    Y R +
Sbjct: 827 RPRSRSRSRSLSRDRTGSPPRGRRRSRSYSRSPSRSYSRSR 867


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,285,827
Number of Sequences: 219361
Number of extensions: 1557724
Number of successful extensions: 5351
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 5116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5346
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)