ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl01h01 |
|---|---|
| Clone Library Name | barley_pub |
>MSBB_HAEIN (P44567) Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA| acyltransferase (EC 2.3.1.-) Length = 318 Score = 32.3 bits (72), Expect = 0.32 Identities = 16/55 (29%), Positives = 29/55 (52%) Frame = -2 Query: 264 GRVHVWRGHEQEFWR*RLKTHLPLCVEGIVEQNWREHVGRVPGSVSVAAFGGGEL 100 G++ +W GH+ + R R +T+L C EQ + + ++ V+ FG GE+ Sbjct: 55 GKLGIWIGHKAKKQRTRAQTNLQYCFPHWTEQQREQVIDKMFAVVAQVMFGIGEI 109
>TRMD_PARUW (Q6MDG9) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 222 Score = 30.0 bits (66), Expect = 1.6 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Frame = +3 Query: 3 LLLRLNENAHLFCMIT-----SESQLNLHDDNLMPGHPILHRQMQPQTQILEHVRHVPAS 167 +L R E L +T ++++ + DD G P + QP T ++HV+ A Sbjct: 21 ILKRAQEKGLLTIRLTDIRDFADNRFHRVDDRPYGGGPGMVMMPQPVTMAIQHVKTPEAK 80 Query: 168 SVQLSLQHTTANAFSTSNARIPAH 239 + LS Q T NA + H Sbjct: 81 VIYLSPQGRTLNAVKCRQLALEKH 104
>TRI37_MOUSE (Q6PCX9) Tripartite motif protein 37| Length = 961 Score = 28.9 bits (63), Expect = 3.6 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%) Frame = -1 Query: 163 AGTCRTCSRICVCGCIWRW----RIGCPGMRLSSCKFSWDSDVIIQKRWA 26 A C CS++C CI RW R CP C+ ++ RWA Sbjct: 25 ARLCPHCSKLCCFSCIRRWLTEQRAQCP-----HCRAPLQLRELVNCRWA 69
>TRI37_HUMAN (O94972) Tripartite motif protein 37 (Mulibrey nanism protein)| Length = 964 Score = 28.9 bits (63), Expect = 3.6 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%) Frame = -1 Query: 163 AGTCRTCSRICVCGCIWRW----RIGCPGMRLSSCKFSWDSDVIIQKRWA 26 A C CS++C CI RW R CP C+ ++ RWA Sbjct: 25 ARLCPHCSKLCCFSCIRRWLTEQRAQCP-----HCRAPLQLRELVNCRWA 69
>DIS3_SCHPO (P37202) Mitotic control protein dis3| Length = 970 Score = 28.5 bits (62), Expect = 4.7 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -2 Query: 189 VEGIVEQNWREHVGRVPGSVSVAAFGGGELDAL 91 V GI+++NWR +VG V + + GG + L Sbjct: 363 VVGILKRNWRPYVGHVDNATIAQSKGGSQQTVL 395
>DRC1A_MOUSE (Q6P9N1) Down-regulated by CTNNB1 protein A| Length = 521 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -1 Query: 166 LAGTCRTCSRICVCG 122 L C+ CSRICVCG Sbjct: 200 LQSLCQICSRICVCG 214
>DRC1A_HUMAN (Q9BYI3) Down-regulated by CTNNB1 protein A| Length = 521 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -1 Query: 166 LAGTCRTCSRICVCG 122 L C+ CSRICVCG Sbjct: 200 LQSLCQICSRICVCG 214
>GP2_RAT (P19218) Pancreatic secretory granule membrane major glycoprotein| GP2 precursor (Pancreatic zymogen granule membrane protein GP-2) (Glycoprotein 80) (GP80) Length = 530 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 149 PTCSRQFCSTIPSTHNGKCVFNL*RQNSCSWPRHTWTLPQRRN 277 P CS ++C T PST KC + C + ++WT R++ Sbjct: 166 PECSLRYC-TDPSTAPKKCEIACRPEEECVFQNNSWTCVCRQD 207
>LGRC_BREPA (Q70LM5) Linear gramicidin synthetase subunit C [Includes:| ATP-dependent valine adenylase (ValA) (Valine activase); ATP-dependent D-valine adenylase (D-ValA) (D-valine activase); Valine racemase [ATP-hydrolyzing] (EC 5.1.1.-); ATP-dependent tr Length = 7756 Score = 28.1 bits (61), Expect = 6.1 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Frame = +3 Query: 27 AHLFCMITSESQLNLHDDNL-MPGHPILHRQMQPQTQILEHVRHV--PASSVQLSLQHTT 197 A ++ + ++ +HD+ + GH +L T+++ +R V SV+ +H T Sbjct: 987 ASIWSQVLGVEKVGIHDNFFELGGHSLL------ATRVISRLREVFGVEQSVRSIFEHPT 1040 Query: 198 ANAFSTSNARIPAHGPAT 251 +A+S A + GP T Sbjct: 1041 IDAWSEQTAALQLGGPGT 1058
>DRC1A_CHICK (Q5ZM13) Down-regulated by CTNNB1 protein A| Length = 515 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -1 Query: 166 LAGTCRTCSRICVCG 122 L C+ CSRICVCG Sbjct: 200 LQSLCQICSRICVCG 214
>ZN592_MOUSE (Q8BHZ4) Zinc finger protein 592 (Zfp-592)| Length = 1262 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +3 Query: 90 PGHPILHRQMQPQTQILEHVRHVPASSVQLS-LQHTTANAFSTSNARIPAHGPATH 254 P P+L Q Q +++ VP + +LS LQ +T + + +R PA PAT+ Sbjct: 895 PECPLLFLQKPELMQHVKNTHGVPRNVEELSSLQSSTDTSSNRPGSRAPAEPPATN 950
>HN_NIPAV (Q9IH62) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 602 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = +3 Query: 15 LNENAHLFCMITSESQLNLHDDNLMPGHPILHRQMQPQTQILEHVRHVP 161 +NEN + C T L +H+ N+ +P+ R+ +PQT+ + ++ +P Sbjct: 138 INENVNEKCKFTLPP-LKIHECNISCPNPLPFREYRPQTEGVSNLVGLP 185
>MCP_CAVPO (P70105) Membrane cofactor protein precursor (CD46 antigen)| Length = 379 Score = 27.7 bits (60), Expect = 7.9 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +2 Query: 140 GTRPTCSRQFCSTIPSTHNGKCVFN 214 G PTC + CS P NGK F+ Sbjct: 152 GRVPTCEKVLCSPPPKIQNGKYTFS 176
>ISPA_HAEIN (P45204) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 295 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +3 Query: 21 ENAHLFCMITSESQLNLHDDNLMPGHPILHRQMQPQTQIL 140 E H + +I + + DDNL GHP H Q T IL Sbjct: 75 EAIHAYSLIHDDLPA-MDDDNLRRGHPTCHIQFDEATAIL 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,002,821 Number of Sequences: 219361 Number of extensions: 995833 Number of successful extensions: 2794 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2724 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2794 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
