ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL360236.26| Human DNA sequence from clone RP11-380M3 on chr... 42 0.91
2gb|AC137558.3| Mus musculus BAC clone RP23-16I17 from chromosome... 40 3.6
3emb|AL354661.14| Human DNA sequence from clone RP11-386D8 on chr... 40 3.6
4dbj|AK124590.1| Homo sapiens cDNA FLJ42599 fis, clone BRACE3010416 40 3.6
5dbj|BS000197.1| Pan troglodytes chromosome 22 clone:PTB-108M20, ... 40 3.6
6emb|AL096870.5|CNS00YVI Human chromosome 14 DNA sequence BAC R-9... 40 3.6
7gb|AF052139.1|AF052139 Homo sapiens clone 23744 mRNA sequence 40 3.6
8gb|AC165222.4| Cavia porcellus, clone Cavia porcellus-25196157D3... 40 3.6
9dbj|AB002366.1| Human mRNA for KIAA0368 gene, partial cds 40 3.6
10dbj|AP001010.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 3.6

>emb|AL360236.26| Human DNA sequence from clone RP11-380M3 on chromosome 6 Contains a
             novel pseudogene, part of the KCNQ5 gene for potassium
             voltage-gated channel KQT-like subfamily member 5, and a
             phosphoglycerate mutase 1 (brain) (PGAM1) pseudogene,
             complete sequence
          Length = 154998

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    gggcatccaattctccaccgc 113
             |||||||||||||||||||||
Sbjct: 40090 gggcatccaattctccaccgc 40070



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>gb|AC137558.3| Mus musculus BAC clone RP23-16I17 from chromosome 6, complete sequence
          Length = 225612

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    gccaaatgcagccacagaca 131
              ||||||||||||||||||||
Sbjct: 118669 gccaaatgcagccacagaca 118688



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>emb|AL354661.14| Human DNA sequence from clone RP11-386D8 on chromosome 9 Contains the
             gene for a novel olfactory (seven transmembrane helix)
             receptor and the 3' end of the gene for a novel protein
             (including KIAA0368), complete sequence
          Length = 138069

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   atgcagccacagacacagat 136
             ||||||||||||||||||||
Sbjct: 70954 atgcagccacagacacagat 70973



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>dbj|AK124590.1| Homo sapiens cDNA FLJ42599 fis, clone BRACE3010416
          Length = 4178

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  atgcagccacagacacagat 136
            ||||||||||||||||||||
Sbjct: 3654 atgcagccacagacacagat 3635



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>dbj|BS000197.1| Pan troglodytes chromosome 22 clone:PTB-108M20, map 22, complete
             sequences
          Length = 192863

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    gagtcccaactaaatttaca 73
             ||||||||||||||||||||
Sbjct: 27701 gagtcccaactaaatttaca 27682



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>emb|AL096870.5|CNS00YVI Human chromosome 14 DNA sequence BAC R-934B9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196533

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    atgaaaatgcccaccttttc 38
             ||||||||||||||||||||
Sbjct: 24579 atgaaaatgcccaccttttc 24598



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>gb|AF052139.1|AF052139 Homo sapiens clone 23744 mRNA sequence
          Length = 1227

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 117 atgcagccacagacacagat 136
           ||||||||||||||||||||
Sbjct: 692 atgcagccacagacacagat 673



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>gb|AC165222.4| Cavia porcellus, clone Cavia porcellus-25196157D3, complete sequence
          Length = 43983

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 163  ccagttctgttcaactatcc 182
            ||||||||||||||||||||
Sbjct: 8494 ccagttctgttcaactatcc 8513



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>dbj|AB002366.1| Human mRNA for KIAA0368 gene, partial cds
          Length = 5665

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  atgcagccacagacacagat 136
            ||||||||||||||||||||
Sbjct: 5147 atgcagccacagacacagat 5128



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>dbj|AP001010.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-701H16, complete
             sequence
          Length = 173709

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   ccacagacacagatcctgga 142
             ||||||||||||||||||||
Sbjct: 79035 ccacagacacagatcctgga 79054


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,191,365
Number of Sequences: 3902068
Number of extensions: 2191365
Number of successful extensions: 36799
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36789
Number of HSP's gapped (non-prelim): 10
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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