ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX015230.1|CNS08JWY Single read from an extremity of a full-... 42 0.51
2emb|BX000434.11| Zebrafish DNA sequence from clone CH211-2E18, c... 40 2.0
3gb|AC149044.1| Pan troglodytes chromosome X clone PTB-089E19 map... 38 8.0
4ref|XM_380957.1| Gibberella zeae PH-1 chromosome 1 conserved hyp... 38 8.0
5emb|CR318599.18| Zebrafish DNA sequence from clone DKEY-28D5 in ... 38 8.0
6gb|AC107670.10| Mus musculus chromosome 14, clone RP23-54K15, co... 38 8.0
7emb|AL157398.6| Human DNA sequence from clone RP11-56H7 on chrom... 38 8.0
8emb|AL137016.11| Human DNA sequence from clone RP4-595A18 on chr... 38 8.0
9emb|CR318610.8| Zebrafish DNA sequence from clone CH211-14B14 in... 38 8.0
10gb|AC092807.2| Homo sapiens chromosome 1 clone RP11-290M5, compl... 38 8.0
11emb|BX537152.15| Zebrafish DNA sequence from clone DKEY-61N7 in ... 38 8.0
12gb|AC158399.2| Mus musculus BAC clone RP23-246A2 from chromosome... 38 8.0
13gb|AC159896.3| Mus musculus BAC clone RP23-265F16 from chromosom... 38 8.0

>emb|BX015230.1|CNS08JWY Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA22DF03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 272

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 82  tccaaaactattacatatcta 102
           |||||||||||||||||||||
Sbjct: 149 tccaaaactattacatatcta 129



to top

>emb|BX000434.11| Zebrafish DNA sequence from clone CH211-2E18, complete sequence
          Length = 179109

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aaaatccaaaactattacat 97
             ||||||||||||||||||||
Sbjct: 60800 aaaatccaaaactattacat 60819



to top

>gb|AC149044.1| Pan troglodytes chromosome X clone PTB-089E19 map human ortholog q27.1,
              complete sequence
          Length = 193569

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 78     aaaatccaaaactattaca 96
              |||||||||||||||||||
Sbjct: 132563 aaaatccaaaactattaca 132545



to top

>ref|XM_380957.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein
           (FG00781.1) partial mRNA
          Length = 1014

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 119 cgatcaggttggtgttgtc 137
           |||||||||||||||||||
Sbjct: 85  cgatcaggttggtgttgtc 67



to top

>emb|CR318599.18| Zebrafish DNA sequence from clone DKEY-28D5 in linkage group 22, complete
              sequence
          Length = 222575

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 78     aaaatccaaaactattaca 96
              |||||||||||||||||||
Sbjct: 150760 aaaatccaaaactattaca 150742



to top

>gb|AC107670.10| Mus musculus chromosome 14, clone RP23-54K15, complete sequence
          Length = 202048

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 84    caaaactattacatatcta 102
             |||||||||||||||||||
Sbjct: 12658 caaaactattacatatcta 12676



to top

>emb|AL157398.6| Human DNA sequence from clone RP11-56H7 on chromosome 10 Contains the
             NEBL gene for the nebulette protein (actin-binding Z-disc
             protein), a pseudogene similar to part of MTCO3
             (COIII)(cytochrome c oxidase III) and a pseudogene similar
             to part of MTND1 (NADH dehydrogenase 1), complete sequence
          Length = 172616

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 76    agaaaatccaaaactatta 94
             |||||||||||||||||||
Sbjct: 85288 agaaaatccaaaactatta 85306



to top

>emb|AL137016.11| Human DNA sequence from clone RP4-595A18 on chromosome Xq26.3-27.2,
             complete sequence
          Length = 117847

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    aaaatccaaaactattaca 96
             |||||||||||||||||||
Sbjct: 64670 aaaatccaaaactattaca 64652



to top

>emb|CR318610.8| Zebrafish DNA sequence from clone CH211-14B14 in linkage group 5,
             complete sequence
          Length = 164564

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    aaaatccaaaactattaca 96
             |||||||||||||||||||
Sbjct: 90818 aaaatccaaaactattaca 90800



to top

>gb|AC092807.2| Homo sapiens chromosome 1 clone RP11-290M5, complete sequence
          Length = 180574

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     aatccaaaactattacata 98
              |||||||||||||||||||
Sbjct: 162760 aatccaaaactattacata 162742



to top

>emb|BX537152.15| Zebrafish DNA sequence from clone DKEY-61N7 in linkage group 14,
             complete sequence
          Length = 243729

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    aaaatccaaaactattaca 96
             |||||||||||||||||||
Sbjct: 12087 aaaatccaaaactattaca 12105



to top

>gb|AC158399.2| Mus musculus BAC clone RP23-246A2 from chromosome 14, complete sequence
          Length = 198948

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 84     caaaactattacatatcta 102
              |||||||||||||||||||
Sbjct: 193799 caaaactattacatatcta 193817



to top

>gb|AC159896.3| Mus musculus BAC clone RP23-265F16 from chromosome 9, complete sequence
          Length = 198120

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    ccaccagaaaatccaaaac 89
             |||||||||||||||||||
Sbjct: 93324 ccaccagaaaatccaaaac 93342


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,089,096
Number of Sequences: 3902068
Number of extensions: 1089096
Number of successful extensions: 71503
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71481
Number of HSP's gapped (non-prelim): 22
length of query: 165
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 143
effective length of database: 17,147,199,772
effective search space: 2452049567396
effective search space used: 2452049567396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top