ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl01g08 |
|---|---|
| Clone Library Name | barley_pub |
>NU2M_DROME (P03896) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 341 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -2 Query: 145 RWLLQEERTACDQARRITRSVILSRRLILTFFV--CCKQFFFLNYV--NWV 5 +WL+ ++ T C+Q +T +++ LI FF C F +NY NW+ Sbjct: 259 KWLVIQQLTLCNQYFMLT--IMMMSTLITLFFYLRICYSAFMMNYFENNWI 307
>GATA4_CHICK (P43691) Transcription factor GATA-4 (GATA-binding factor 4)| (Fragment) Length = 380 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%) Frame = +1 Query: 118 PFFLPARASASPRAKGWAERNW-------WRRVPEGRPTCYSRLHYEKIH 246 P F P R ++ R G + N WRR EG P C + Y K+H Sbjct: 193 PLFKPQRRLSASRRVGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLH 242
>NU2M_DROYA (P03895) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 341 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = -2 Query: 145 RWLLQEERTACDQARRITRSVILSRRLILTFFVCCKQFFFLNYV--NWV 5 +WL+ ++ T C+Q +T ++ + + + C F LNY NW+ Sbjct: 259 KWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAFMLNYFENNWI 307
>AREA_GIBFU (P78688) Nitrogen regulatory protein areA| Length = 971 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 184 WRRVPEGRPTCYSRLHYEKIHLCLPNLSQQT 276 WRR PEG+P C + + K+H + LS +T Sbjct: 705 WRRNPEGQPLCNACGLFLKLHGVVRPLSLKT 735
>AREA_PENCH (Q01582) Nitrogen regulatory protein areA (Nitrogen regulator nre)| Length = 725 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 184 WRRVPEGRPTCYSRLHYEKIHLCLPNLSQQT 276 WRR PEG+P C + + K+H + LS +T Sbjct: 536 WRRNPEGQPLCNACGLFLKLHGVVRPLSLKT 566
>AREA_EMENI (P17429) Nitrogen regulatory protein areA| Length = 876 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 184 WRRVPEGRPTCYSRLHYEKIHLCLPNLSQQT 276 WRR PEG+P C + + K+H + LS +T Sbjct: 684 WRRNPEGQPLCNACGLFLKLHGVVRPLSLKT 714
>NUT1_MAGGR (Q01168) Nitrogen regulatory protein NUT1| Length = 956 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 184 WRRVPEGRPTCYSRLHYEKIHLCLPNLSQQT 276 WRR PEG+P C + + K+H + LS +T Sbjct: 674 WRRNPEGQPLCNACGLFLKLHGVVRPLSLKT 704
>NRFA_PENUR (Q92269) Nitrogen regulatory protein nrfA| Length = 865 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 184 WRRVPEGRPTCYSRLHYEKIHLCLPNLSQQT 276 WRR PEG+P C + + K+H + LS +T Sbjct: 676 WRRNPEGQPLCNACGLFLKLHGVVRPLSLKT 706
>AREA_ASPOR (O13415) Nitrogen regulatory protein areA| Length = 866 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 184 WRRVPEGRPTCYSRLHYEKIHLCLPNLSQQT 276 WRR PEG+P C + + K+H + LS +T Sbjct: 675 WRRNPEGQPLCNACGLFLKLHGVVRPLSLKT 705
>AREA_ASPNG (O13412) Nitrogen regulatory protein areA| Length = 882 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 184 WRRVPEGRPTCYSRLHYEKIHLCLPNLSQQT 276 WRR PEG+P C + + K+H + LS +T Sbjct: 687 WRRNPEGQPLCNACGLFLKLHGVVRPLSLKT 717
>AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen regulator nmc)| Length = 860 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 184 WRRVPEGRPTCYSRLHYEKIHLCLPNLSQQT 276 WRR PEG+P C + + K+H + LS +T Sbjct: 671 WRRNPEGQPLCNACGLFLKLHGVVRPLSLKT 701
>NU2M_DROSI (P29869) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) (Fragment) Length = 274 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = -2 Query: 145 RWLLQEERTACDQARRITRSVILSRRLILTFFVCCKQFFFLNYV--NWV 5 +WL+ ++ T C+Q +T ++ + + + C F +NY NW+ Sbjct: 192 KWLVIQQLTLCNQYFLLTLMMMSTLITLFFYLRICYSAFMMNYFENNWI 240
>NU2M_DROSE (P29868) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) (Fragment) Length = 274 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = -2 Query: 145 RWLLQEERTACDQARRITRSVILSRRLILTFFVCCKQFFFLNYV--NWV 5 +WL+ ++ T C+Q +T ++ + + + C F +NY NW+ Sbjct: 192 KWLVIQQLTLCNQYFLLTLMMMSTLITLFFYLRICYSAFMMNYFENNWI 240
>SREP_PENCH (Q92259) GATA factor SREP| Length = 532 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +1 Query: 109 DHTPFFLPARASASPRAK-----GWAERNWWRRVPEGRPTCYSRLHYEKIHLC 252 + TP PA A AS G WRR +G P C + Y K+H C Sbjct: 219 EETPVKAPAPADASNTLVACQNCGTTVTPLWRRDEQGHPICNACGLYYKLHGC 271 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,853,814 Number of Sequences: 219361 Number of extensions: 953953 Number of successful extensions: 2186 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2155 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2186 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
