ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl01g06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009052.1| Triticum aestivum clone wdr1.pk0002.e12:fis, full insert mRNA sequence Length = 1421 Score = 597 bits (301), Expect = e-167 Identities = 364/383 (95%), Gaps = 4/383 (1%) Strand = Plus / Plus Query: 51 caggcaagcatgtttacacacaattatgttatcattcagactatcaataaaagcttattt 110 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111 caggcaagcatgttcacacacaattatgttatcattcagactatcaataaaagcttattt 170 Query: 111 gtcagtcatccacaagcttggtacttgggattttatttcttaaggaatacacattctttt 170 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 171 gtcagtcatccacaaggttggtacttgggactttatttcttaaggaatacacattctttt 230 Query: 171 tatcaggccaacaattggtct-ccttgtataatgaactgggatagaattttgttgaagta 229 ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| || Sbjct: 231 tatcaggccaacaatcggtctgccttgtataatgaactgggatagaagtttgttg---ta 287 Query: 230 tgggaatagtttacagcagcctgtatcatcggaactgctcttcaactatcaagcaacttt 289 ||| |||||||||||||||| | |||||||||| |||||||||| ||||||||||||||| Sbjct: 288 tggcaatagtttacagcagcttctatcatcggagctgctcttcagctatcaagcaacttt 347 Query: 290 gtgtgctcgacgatgagaaccagatgcttcatccttttttgctccttctggtctcctagc 349 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 348 gtgtgctcgacgatgagaaccagacgcttcatccttctttgctccttctggtctcctagc 407 Query: 350 ccaggctggggcttggtcaggtccataccggtaatcgtagaaaagttcggcactagcttc 409 |||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 408 ccaggctggggcttggtccggtccataccggtaatcatagaagagttcggcactagcttc 467 Query: 410 aatatgctcccttgcatagatac 432 ||||||||||||||||||||||| Sbjct: 468 aatatgctcccttgcatagatac 490 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 2 tagcataaatttttattgccgccttggtccgcctcaacaagtagatgttcaggcaa 57 |||||||||||||||||||| |||||||| | |||||| |||||||||||||||| Sbjct: 18 tagcataaatttttattgccatcttggtccacttcaacatgtagatgttcaggcaa 73
>gb|AF443598.1| Zea mays enhancer of zeste-like protein 3 (mez3) mRNA, complete cds Length = 3149 Score = 141 bits (71), Expect = 2e-30 Identities = 156/183 (85%), Gaps = 1/183 (0%) Strand = Plus / Minus Query: 251 tgtatcatc-ggaactgctcttcaactatcaagcaactttgtgtgctcgacgatgagaac 309 ||||||||| ||| |||||||||| ||||| ||||||||||||||||||| | ||||| Sbjct: 2769 tgtatcatccggagctgctcttcagctatcgagcaactttgtgtgctcgatggtgagaga 2710 Query: 310 cagatgcttcatccttttttgctccttctggtctcctagcccaggctggggcttggtcag 369 | |||||||| ||||| |||| ||||| |||||||||||||| ||||| || ||||||| Sbjct: 2709 cggatgcttcgtccttctttgacccttcgggtctcctagcccaagctggagcctggtcag 2650 Query: 370 gtccataccggtaatcgtagaaaagttcggcactagcttcaatatgctcccttgcataga 429 | ||||| || ||||| ||||| ||||| ||||||| |||||||||||| | ||||||| Sbjct: 2649 gcccataacgataatcatagaagagttcctcactagcctcaatatgctccttcgcataga 2590 Query: 430 tac 432 ||| Sbjct: 2589 tac 2587
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 133 bits (67), Expect = 5e-28 Identities = 136/159 (85%) Strand = Plus / Plus Query: 274 actatcaagcaactttgtgtgctcgacgatgagaaccagatgcttcatccttttttgctc 333 |||||| |||||||||||| ||||| | ||||| ||||||||||||||||||||| | Sbjct: 10924354 actatctagcaactttgtgcgctcggtggtgagagacagatgcttcatccttttttgacc 10924413 Query: 334 cttctggtctcctagcccaggctggggcttggtcaggtccataccggtaatcgtagaaaa 393 |||| |||||||||||||| ||||||||||||||||||||||| |||||||| || || | Sbjct: 10924414 cttccggtctcctagcccaagctggggcttggtcaggtccatagcggtaatcataaaaga 10924473 Query: 394 gttcggcactagcttcaatatgctcccttgcatagatac 432 |||| | ||||| ||||| | ||| |||||||||||| Sbjct: 10924474 gttcctcgctagcctcaatgcggtcctttgcatagatac 10924512
>gb|AF407010.1| Oryza sativa SET domain-containing protein (SET1) mRNA, complete cds Length = 2957 Score = 133 bits (67), Expect = 5e-28 Identities = 136/159 (85%) Strand = Plus / Minus Query: 274 actatcaagcaactttgtgtgctcgacgatgagaaccagatgcttcatccttttttgctc 333 |||||| |||||||||||| ||||| | ||||| ||||||||||||||||||||| | Sbjct: 2707 actatctagcaactttgtgcgctcggtggtgagagacagatgcttcatccttttttgacc 2648 Query: 334 cttctggtctcctagcccaggctggggcttggtcaggtccataccggtaatcgtagaaaa 393 |||| |||||||||||||| ||||||||||||||||||||||| |||||||| || || | Sbjct: 2647 cttccggtctcctagcccaagctggggcttggtcaggtccatagcggtaatcataaaaga 2588 Query: 394 gttcggcactagcttcaatatgctcccttgcatagatac 432 |||| | ||||| ||||| | ||| |||||||||||| Sbjct: 2587 gttcctcgctagcctcaatgcggtcctttgcatagatac 2549
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence Length = 127348 Score = 133 bits (67), Expect = 5e-28 Identities = 136/159 (85%) Strand = Plus / Minus Query: 274 actatcaagcaactttgtgtgctcgacgatgagaaccagatgcttcatccttttttgctc 333 |||||| |||||||||||| ||||| | ||||| ||||||||||||||||||||| | Sbjct: 56675 actatctagcaactttgtgcgctcggtggtgagagacagatgcttcatccttttttgacc 56616 Query: 334 cttctggtctcctagcccaggctggggcttggtcaggtccataccggtaatcgtagaaaa 393 |||| |||||||||||||| ||||||||||||||||||||||| |||||||| || || | Sbjct: 56615 cttccggtctcctagcccaagctggggcttggtcaggtccatagcggtaatcataaaaga 56556 Query: 394 gttcggcactagcttcaatatgctcccttgcatagatac 432 |||| | ||||| ||||| | ||| |||||||||||| Sbjct: 56555 gttcctcgctagcctcaatgcggtcctttgcatagatac 56517
>emb|AJ421722.3|OSA421722 Oryza sativa (indica cultivar-group) mRNA for enhancer of zeste protein (ez1 gene) Length = 3133 Score = 133 bits (67), Expect = 5e-28 Identities = 136/159 (85%) Strand = Plus / Minus Query: 274 actatcaagcaactttgtgtgctcgacgatgagaaccagatgcttcatccttttttgctc 333 |||||| |||||||||||| ||||| | ||||| ||||||||||||||||||||| | Sbjct: 2904 actatctagcaactttgtgcgctcggtggtgagagacagatgcttcatccttttttgacc 2845 Query: 334 cttctggtctcctagcccaggctggggcttggtcaggtccataccggtaatcgtagaaaa 393 |||| |||||||||||||| ||||||||||||||||||||||| |||||||| || || | Sbjct: 2844 cttccggtctcctagcccaagctggggcttggtcaggtccatagcggtaatcataaaaga 2785 Query: 394 gttcggcactagcttcaatatgctcccttgcatagatac 432 |||| | ||||| ||||| | ||| |||||||||||| Sbjct: 2784 gttcctcgctagcctcaatgcggtcctttgcatagatac 2746
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 133 bits (67), Expect = 5e-28 Identities = 136/159 (85%) Strand = Plus / Plus Query: 274 actatcaagcaactttgtgtgctcgacgatgagaaccagatgcttcatccttttttgctc 333 |||||| |||||||||||| ||||| | ||||| ||||||||||||||||||||| | Sbjct: 10922455 actatctagcaactttgtgcgctcggtggtgagagacagatgcttcatccttttttgacc 10922514 Query: 334 cttctggtctcctagcccaggctggggcttggtcaggtccataccggtaatcgtagaaaa 393 |||| |||||||||||||| ||||||||||||||||||||||| |||||||| || || | Sbjct: 10922515 cttccggtctcctagcccaagctggggcttggtcaggtccatagcggtaatcataaaaga 10922574 Query: 394 gttcggcactagcttcaatatgctcccttgcatagatac 432 |||| | ||||| ||||| | ||| |||||||||||| Sbjct: 10922575 gttcctcgctagcctcaatgcggtcctttgcatagatac 10922613
>gb|AF443597.1| Zea mays enhancer of zeste-like protein 2 (mez2) mRNA, complete cds Length = 3047 Score = 115 bits (58), Expect = 1e-22 Identities = 139/166 (83%) Strand = Plus / Minus Query: 267 ctcttcaactatcaagcaactttgtgtgctcgacgatgagaaccagatgcttcatccttt 326 ||||||| ||||| ||| ||||||||||||||||| ||||| | ||||| || ||||| Sbjct: 2722 ctcttcagctatcgagccactttgtgtgctcgacggtgagagacggatgcctcgtccttc 2663 Query: 327 tttgctccttctggtctcctagcccaggctggggcttggtcaggtccataccggtaatcg 386 |||| |||||| |||||||||||||| ||||| || |||||||||||||| || ||||| Sbjct: 2662 tttgatccttcgggtctcctagcccaagctggagcctggtcaggtccataacgataatca 2603 Query: 387 tagaaaagttcggcactagcttcaatatgctcccttgcatagatac 432 || || ||||| | ||||| |||||||||||| | ||||| |||| Sbjct: 2602 taaaagagttcctcgctagcctcaatatgctccttcgcatatatac 2557
>gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complete sequence Length = 173067 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 154 ggaatacacattctttttatcag 176 ||||||||||||||||||||||| Sbjct: 90497 ggaatacacattctttttatcag 90475
>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2 Contains a novel gene, the 5' end of the PLAC3 gene for placenta-specific 3 (PLAC3) and a protein tyrosine phosphatase type IVA (member 1) (PTP4A1) pseudogene, complete sequence Length = 168835 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 155 gaatacacattctttttatcag 176 |||||||||||||||||||||| Sbjct: 130455 gaatacacattctttttatcag 130434
>emb|AL022151.2|HS199L16 Human DNA sequence from clone RP1-199L16 on chromosome Xq22.1-22.3 Contains a ribosomal protein S29 (RPS29) pseudogene, complete sequence Length = 134963 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 gaatacacattctttttatcag 176 |||||||||||||||||||||| Sbjct: 5143 gaatacacattctttttatcag 5164
>emb|AL022154.2|HS249C1 Human DNA sequence from clone RP1-249C1 on chromosome Xq21.1-22.2, complete sequence Length = 118153 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 gaatacacattctttttatcag 176 |||||||||||||||||||||| Sbjct: 77628 gaatacacattctttttatcag 77649
>gb|AC128687.10| Homo sapiens 3 BAC RP11-255E6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 92345 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 gaatacacattctttttatcag 176 |||||||||||||||||||||| Sbjct: 34018 gaatacacattctttttatcag 34039
>gb|AC092937.8| Homo sapiens 3q BAC RP11-114F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188709 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 gaatacacattctttttatcag 176 |||||||||||||||||||||| Sbjct: 114298 gaatacacattctttttatcag 114319
>gb|AC021151.8| Homo sapiens BAC clone RP11-483A20 from 4, complete sequence Length = 175081 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 gaatacacattctttttatcag 176 |||||||||||||||||||||| Sbjct: 2864 gaatacacattctttttatcag 2885
>gb|AC110763.4| Homo sapiens BAC clone RP11-57E2 from 4, complete sequence Length = 84182 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 gaatacacattctttttatcag 176 |||||||||||||||||||||| Sbjct: 11489 gaatacacattctttttatcag 11510
>gb|AC112197.3| Homo sapiens chromosome 5 clone RP11-442I12, complete sequence Length = 175775 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 155 gaatacacattctttttatcag 176 |||||||||||||||||||||| Sbjct: 55249 gaatacacattctttttatcag 55228
>emb|AL121981.17|HS1061C18 Human DNA sequence from clone RP5-1061C18 on chromosome 3p36.22-36.33 Contains the 5' part of the DLG1 gene encoding the discs protein (large Drosophila homolog 1, presynaptic protein SAP97) and a CpG island, complete sequence Length = 148493 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 155 gaatacacattctttttatcag 176 |||||||||||||||||||||| Sbjct: 135347 gaatacacattctttttatcag 135326
>ref|XM_641627.1| Dictyostelium discoideum hypothetical protein (DDB0190980), partial mRNA Length = 1269 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 307 aaccagatgcttcatccttttttgc 331 |||||||||||||||||||| |||| Sbjct: 457 aaccagatgcttcatcctttcttgc 433
>gb|AC115967.11| Mus musculus chromosome 8, clone RP24-72G22, complete sequence Length = 221435 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 tttacacacaattatgttatc 83 ||||||||||||||||||||| Sbjct: 9627 tttacacacaattatgttatc 9647
>emb|AL451105.13| Human DNA sequence from clone RP11-212D3 on chromosome X Contains a SAR1a gene homolog 1 (S. cerevisiae) (SARA1) pseudogene, two novel genes and a chromosome 14 open reading frame 116 (C14orf116) pseudogene, complete sequence Length = 125288 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 aatacacattctttttatcag 176 ||||||||||||||||||||| Sbjct: 11702 aatacacattctttttatcag 11682
>gb|AC100800.2| Homo sapiens chromosome 8, clone RP11-161I2, complete sequence Length = 196849 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gaatacacattctttttatca 175 ||||||||||||||||||||| Sbjct: 166076 gaatacacattctttttatca 166096
>gb|AC090420.6| Homo sapiens chromosome 8, clone RP11-346L6, complete sequence Length = 216706 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gaatacacattctttttatca 175 ||||||||||||||||||||| Sbjct: 105204 gaatacacattctttttatca 105224
>gb|AC108940.3| Homo sapiens BAC clone RP11-728F4 from 2, complete sequence Length = 126219 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gaatacacattctttttatca 175 ||||||||||||||||||||| Sbjct: 44545 gaatacacattctttttatca 44565
>gb|AC119902.12| Mus musculus chromosome 8, clone RP24-235G23, complete sequence Length = 146712 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 tttacacacaattatgttatc 83 ||||||||||||||||||||| Sbjct: 103164 tttacacacaattatgttatc 103184
>gb|AY398365.1| Danio rerio clone RK124A3H10 interferon-stimulated transcription factor 3, gamma 48kDa (ISGF3G) mRNA, complete cds Length = 1772 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 gaattttgttgaagtatgggaata 237 ||||||||||||||||| |||||| Sbjct: 1356 gaattttgttgaagtatcggaata 1379
>ref|NM_205710.1| Danio rerio zgc:92097 (zgc:92097), mRNA Length = 1772 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 gaattttgttgaagtatgggaata 237 ||||||||||||||||| |||||| Sbjct: 1356 gaattttgttgaagtatcggaata 1379
>gb|BC081591.1| Danio rerio cDNA clone MGC:92097 IMAGE:7047409, complete cds Length = 1753 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 gaattttgttgaagtatgggaata 237 ||||||||||||||||| |||||| Sbjct: 1322 gaattttgttgaagtatcggaata 1345
>gb|AC106834.9| Mus musculus chromosome 19, clone RP24-132H7, complete sequence Length = 177277 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 atcaagcaactttgtgtgct 296 |||||||||||||||||||| Sbjct: 62269 atcaagcaactttgtgtgct 62250
>gb|AC131301.9| Mus musculus chromosome 14, clone RP24-70B5, complete sequence Length = 236224 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 caataaaagcttatttgtca 114 |||||||||||||||||||| Sbjct: 201658 caataaaagcttatttgtca 201639
>gb|AY552542.1|AY552537S6 Oryctolagus cuniculus H+,K+-ATPase alpha 2 subunit gene, exons 22, 23 and complete cds Length = 2257 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 cttttttgctccttctggtc 342 |||||||||||||||||||| Sbjct: 1919 cttttttgctccttctggtc 1938
>emb|AL731553.12| Human DNA sequence from clone RP11-56M3 on chromosome 10 Contains a nudix (nucleoside diphosphate linked moiety X)-type pseudogene, complete sequence Length = 99089 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 cattcagactatcaataaaa 102 |||||||||||||||||||| Sbjct: 79424 cattcagactatcaataaaa 79405
>emb|AL162580.20| Human DNA sequence from clone RP11-524A17 on chromosome 6 Contains a novel gene and a protein phosphatase 1 regulatory (inhibitor) subunit 14A (PPP1R14A) pseudogene, complete sequence Length = 171483 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 ttctttttatcaggccaacaattg 187 |||||||||| ||||||||||||| Sbjct: 62357 ttctttttatgaggccaacaattg 62380
>emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chromosome 13q21.33-22.3 Contains a signal sequence receptor, alpha (translocon-associated protein alpha) (SSR1) pseudogene, complete sequence Length = 151603 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 aggaatacacattcttttta 172 |||||||||||||||||||| Sbjct: 15181 aggaatacacattcttttta 15200
>emb|BX901898.15| Zebrafish DNA sequence from clone DKEY-148E3 in linkage group 1, complete sequence Length = 249378 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 tgttatcattcagactatcaataa 100 ||||| |||||||||||||||||| Sbjct: 229366 tgttaacattcagactatcaataa 229343
>gb|AC008679.5| Homo sapiens chromosome 5 clone CTB-53D8, complete sequence Length = 232613 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 atccttttttgctccttctg 339 |||||||||||||||||||| Sbjct: 148544 atccttttttgctccttctg 148525
>emb|BX571950.6| Zebrafish DNA sequence from clone CH211-198P7 in linkage group 12, complete sequence Length = 196442 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 gaattttgttgaagtatgggaata 237 ||||||||||||||||| |||||| Sbjct: 137532 gaattttgttgaagtatcggaata 137509
>gb|AC090971.3| Homo sapiens chromosome 15 clone RP11-56B16 map 15q21.3, complete sequence Length = 192464 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 267 ctcttcaactatcaagcaactttg 290 ||||||||| |||||||||||||| Sbjct: 78766 ctcttcaacaatcaagcaactttg 78789
>gb|AC090970.3| Homo sapiens chromosome 15 clone CTD-2650P22 map 15q21, complete sequence Length = 187399 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 267 ctcttcaactatcaagcaactttg 290 ||||||||| |||||||||||||| Sbjct: 2552 ctcttcaacaatcaagcaactttg 2575
>gb|AC154263.2| Mus musculus BAC clone RP24-308C1 from chromosome 14, complete sequence Length = 196901 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 caataaaagcttatttgtca 114 |||||||||||||||||||| Sbjct: 182385 caataaaagcttatttgtca 182404
>gb|AC010629.8| Homo sapiens chromosome 5 clone CTD-2213L16, complete sequence Length = 82882 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 aggaatacacattctttttatcag 176 ||||||||||||||||||| |||| Sbjct: 45487 aggaatacacattctttttctcag 45510
>gb|AC002479.1|AC002479 Human BAC clone GS1-9G13 from 5p15.2, complete sequence Length = 88682 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 aggaatacacattctttttatcag 176 ||||||||||||||||||| |||| Sbjct: 9897 aggaatacacattctttttctcag 9920
>emb|CR812482.14| Zebrafish DNA sequence from clone CH211-157N19 in linkage group 1, complete sequence Length = 179573 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 tgttatcattcagactatcaataa 100 ||||| |||||||||||||||||| Sbjct: 67119 tgttaacattcagactatcaataa 67142
>gb|AC147972.3| Gallus gallus BAC clone CH261-78M4 from chromosome unknown, complete sequence Length = 197959 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 76 atgttatcattcagactatcaataaaag 103 |||||||||| || |||||||||||||| Sbjct: 30810 atgttatcatccatactatcaataaaag 30783 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,222,068 Number of Sequences: 3902068 Number of extensions: 5222068 Number of successful extensions: 88746 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88616 Number of HSP's gapped (non-prelim): 128 length of query: 432 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 410 effective length of database: 17,147,199,772 effective search space: 7030351906520 effective search space used: 7030351906520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
