ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRUM1_MOUSE (Q8VHS2) Crumbs homolog 1 precursor 29 6.2
2CFTR_CARPS (Q2QLC5) Cystic fibrosis transmembrane conductance re... 28 8.1

>CRUM1_MOUSE (Q8VHS2) Crumbs homolog 1 precursor|
          Length = 1405

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 249 HSKAICEHKAIMYICHCPTPYT 314
           H+ A CE     YICHC   YT
Sbjct: 310 HNDATCEDTVDSYICHCRPGYT 331



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>CFTR_CARPS (Q2QLC5) Cystic fibrosis transmembrane conductance regulator (CFTR)|
            (cAMP-dependent chloride channel) (ATP-binding cassette
            transporter sub-family C member 7)
          Length = 1482

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 141  MVHILLTTSNLLHHRSSTSLVLHNLLH 221
            +VH L+T S +LHH+     +LH++LH
Sbjct: 938  LVHSLITVSKILHHK-----MLHSVLH 959


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,703,436
Number of Sequences: 219361
Number of extensions: 1424217
Number of successful extensions: 3912
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3912
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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