Clone Name | rbastl01g05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | CRUM1_MOUSE (Q8VHS2) Crumbs homolog 1 precursor | 29 | 6.2 | 2 | CFTR_CARPS (Q2QLC5) Cystic fibrosis transmembrane conductance re... | 28 | 8.1 |
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>CRUM1_MOUSE (Q8VHS2) Crumbs homolog 1 precursor| Length = 1405 Score = 28.9 bits (63), Expect = 6.2 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +3 Query: 249 HSKAICEHKAIMYICHCPTPYT 314 H+ A CE YICHC YT Sbjct: 310 HNDATCEDTVDSYICHCRPGYT 331
>CFTR_CARPS (Q2QLC5) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1482 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +3 Query: 141 MVHILLTTSNLLHHRSSTSLVLHNLLH 221 +VH L+T S +LHH+ +LH++LH Sbjct: 938 LVHSLITVSKILHHK-----MLHSVLH 959 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,703,436 Number of Sequences: 219361 Number of extensions: 1424217 Number of successful extensions: 3912 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3791 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3912 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)