Clone Information

BLAST Search Result

Clone Name	rbastl01g05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DQ201163.1\| Hordeum vulgare subsp. vulgare cultivar CI6155 cr...	868	0.0
2	gb\|DQ201162.1\| Hordeum vulgare subsp. vulgare cultivar Morex cry...	868	0.0
3	gb\|DQ201151.1\| Hordeum vulgare subsp. vulgare cultivar Kompolti ...	729	0.0
4	gb\|DQ201150.1\| Hordeum vulgare subsp. vulgare cultivar Morex cry...	729	0.0
5	gb\|DQ201149.1\| Hordeum vulgare subsp. vulgare cultivar Dicktoo c...	729	0.0
6	ref\|XM_466372.1\| Oryza sativa (japonica cultivar-group), mRNA	52	0.002
7	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
8	dbj\|AP005699.3\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
9	dbj\|AK064910.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
10	dbj\|AB073546.1\| Oryza sativa (japonica cultivar-group) OsCRY1a m...	52	0.002
11	dbj\|AB024337.1\| Oryza sativa (japonica cultivar-group) mRNA for ...	52	0.002
12	emb\|AL591521.8\| Human DNA sequence from clone RP5-965F6 on chrom...	42	1.5
13	ref\|NM_130382.1\| Arabidopsis thaliana ATGPX4 (GLUTATHIONE PEROXI...	40	6.1
14	ref\|XM_632878.1\| Dictyostelium discoideum hypothetical protein (...	40	6.1
15	gb\|AC157569.12\| Mus musculus chromosome 3, clone RP23-434M21, co...	40	6.1
16	gb\|AC162527.5\| Mus musculus BAC clone RP23-30M17 from chromosome...	40	6.1
17	gb\|AC123985.10\| Mus musculus chromosome 14, clone RP23-154G18, c...	40	6.1
18	gb\|AC069444.17\| Homo sapiens 3 BAC RP11-169N13 (Roswell Park Can...	40	6.1
19	gb\|AF364606.1\| Homo sapiens orphan nuclear receptors (NR1I2) gen...	40	6.1
20	gb\|AC007656.2\| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Par...	40	6.1
21	gb\|AC093429.2\| Homo sapiens chromosome 1 clone RP11-465K1, compl...	40	6.1
22	gb\|BT003735.1\| Arabidopsis thaliana At2g48150 mRNA, complete cds	40	6.1
23	gb\|AY088692.1\| Arabidopsis thaliana clone 92074 mRNA, complete s...	40	6.1
24	gb\|AC009299.5\| Homo sapiens BAC clone RP11-26B22 from 2, complet...	40	6.1
25	dbj\|AK118448.1\| Arabidopsis thaliana At2g48150 mRNA for putative...	40	6.1
26	emb\|AL672052.7\| Mouse DNA sequence from clone RP23-60A20 on chro...	40	6.1
27	emb\|AL845291.5\| Mouse DNA sequence from clone RP23-1O11 on chrom...	40	6.1

>gb|DQ201163.1| Hordeum vulgare subsp. vulgare cultivar CI6155 cryptochrome 1a mRNA,
            partial cds
          Length = 1400

 Score =  868 bits (438), Expect = 0.0
 Identities = 448/450 (99%), Gaps = 1/450 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1307 cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 1248

                                                                        
Query: 61   gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1247 gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 1188

                                                                        
Query: 121  taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1187 taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 1128

                                                                        
Query: 181  acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1127 acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 1068

                                                                        
Query: 241  gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 1008

                                                                        
Query: 301  caacgccctacacaattaaattcgttatcgcatacggacaaaagctttccacttggcaac 360
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1007 caacgccctacacaattaaattcgttatcgcatacggacaaaagttttccacttggcaac 948

                                                                        
Query: 361  ctgctgattgttcatccagcatgcatctgagttcacgatgactgggaaagctggttccag 420
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  ctgctg-ttgttcatccagcatgcatctgagttcacgatgactgggaaagctggttccag 889

                                          
Query: 421  ttcatcaacctattatgtgactgcgggttc 450
            ||||||||||||||||||||||||||||||
Sbjct: 888  ttcatcaacctattatgtgactgcgggttc 859

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>gb|DQ201162.1| Hordeum vulgare subsp. vulgare cultivar Morex cryptochrome 1a mRNA,
            partial cds
          Length = 1415

 Score =  868 bits (438), Expect = 0.0
 Identities = 448/450 (99%), Gaps = 1/450 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 1239

                                                                        
Query: 61   gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 1179

                                                                        
Query: 121  taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 1119

                                                                        
Query: 181  acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 1059

                                                                        
Query: 241  gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 999

                                                                        
Query: 301  caacgccctacacaattaaattcgttatcgcatacggacaaaagctttccacttggcaac 360
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 998  caacgccctacacaattaaattcgttatcgcatacggacaaaagttttccacttggcaac 939

                                                                        
Query: 361  ctgctgattgttcatccagcatgcatctgagttcacgatgactgggaaagctggttccag 420
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938  ctgctg-ttgttcatccagcatgcatctgagttcacgatgactgggaaagctggttccag 880

                                          
Query: 421  ttcatcaacctattatgtgactgcgggttc 450
            ||||||||||||||||||||||||||||||
Sbjct: 879  ttcatcaacctattatgtgactgcgggttc 850

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>gb|DQ201151.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai cryptochrome
            1a (Cry1a) gene, complete cds
          Length = 3808

 Score =  729 bits (368), Expect = 0.0
 Identities = 378/380 (99%), Gaps = 1/380 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3748 cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 3689

                                                                        
Query: 61   gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3688 gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 3629

                                                                        
Query: 121  taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3628 taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 3569

                                                                        
Query: 181  acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3568 acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 3509

                                                                        
Query: 241  gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3508 gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 3449

                                                                        
Query: 301  caacgccctacacaattaaattcgttatcgcatacggacaaaagctttccacttggcaac 360
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3448 caacgccctacacaattaaattcgttatcgcatacggacaaaagttttccacttggcaac 3389

                                
Query: 361  ctgctgattgttcatccagc 380
            |||||| |||||||||||||
Sbjct: 3388 ctgctg-ttgttcatccagc 3370



 Score =  141 bits (71), Expect = 2e-30
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                        
Query: 380  catgcatctgagttcacgatgactgggaaagctggttccagttcatcaacctattatgtg 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3282 catgcatctgagttcacgatgactgggaaagctggttccagttcatcaacctattatgtg 3223

                       
Query: 440  actgcgggttc 450
            |||||||||||
Sbjct: 3222 actgcgggttc 3212

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>gb|DQ201150.1| Hordeum vulgare subsp. vulgare cultivar Morex cryptochrome 1a (Cry1a)
            gene, complete cds
          Length = 3808

 Score =  729 bits (368), Expect = 0.0
 Identities = 378/380 (99%), Gaps = 1/380 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3748 cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 3689

                                                                        
Query: 61   gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3688 gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 3629

                                                                        
Query: 121  taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3628 taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 3569

                                                                        
Query: 181  acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3568 acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 3509

                                                                        
Query: 241  gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3508 gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 3449

                                                                        
Query: 301  caacgccctacacaattaaattcgttatcgcatacggacaaaagctttccacttggcaac 360
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3448 caacgccctacacaattaaattcgttatcgcatacggacaaaagttttccacttggcaac 3389

                                
Query: 361  ctgctgattgttcatccagc 380
            |||||| |||||||||||||
Sbjct: 3388 ctgctg-ttgttcatccagc 3370



 Score =  141 bits (71), Expect = 2e-30
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                        
Query: 380  catgcatctgagttcacgatgactgggaaagctggttccagttcatcaacctattatgtg 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3282 catgcatctgagttcacgatgactgggaaagctggttccagttcatcaacctattatgtg 3223

                       
Query: 440  actgcgggttc 450
            |||||||||||
Sbjct: 3222 actgcgggttc 3212

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>gb|DQ201149.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo cryptochrome 1a
            (Cry1a) gene, complete cds
          Length = 3808

 Score =  729 bits (368), Expect = 0.0
 Identities = 378/380 (99%), Gaps = 1/380 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3748 cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 3689

                                                                        
Query: 61   gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3688 gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 3629

                                                                        
Query: 121  taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3628 taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 3569

                                                                        
Query: 181  acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3568 acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 3509

                                                                        
Query: 241  gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3508 gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 3449

                                                                        
Query: 301  caacgccctacacaattaaattcgttatcgcatacggacaaaagctttccacttggcaac 360
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3448 caacgccctacacaattaaattcgttatcgcatacggacaaaagttttccacttggcaac 3389

                                
Query: 361  ctgctgattgttcatccagc 380
            |||||| |||||||||||||
Sbjct: 3388 ctgctg-ttgttcatccagc 3370



 Score =  141 bits (71), Expect = 2e-30
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                        
Query: 380  catgcatctgagttcacgatgactgggaaagctggttccagttcatcaacctattatgtg 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3282 catgcatctgagttcacgatgactgggaaagctggttccagttcatcaacctattatgtg 3223

                       
Query: 440  actgcgggttc 450
            |||||||||||
Sbjct: 3222 actgcgggttc 3212

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>ref|XM_466372.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2832

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 119/148 (80%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                        
Query: 147  catatccttttgacaactagcaatctactacaccacagaagttctacaagtctagtttta 206
            ||||||||||||||||||||||| |  ||| |||||| | |||||  ||  |||| ||||
Sbjct: 2740 catatccttttgacaactagcaaac--ctataccacaaatgttctgtaaaactagcttta 2683

                                                                        
Query: 207  cacaac--ttattgcacccatgaagctgcatcacttgattcctgcatagcaaggctatat 264
            || ||   |||||||| | | |||||| ||||||||||||| |||| | |||||||||| 
Sbjct: 2682 cataatcattattgcatcaaggaagcttcatcacttgattcatgcacaccaaggctatag 2623

                                        
Query: 265  gtgaacataaggcgataatgtacatatg 292
               |||| |||| |||||| ||||||||
Sbjct: 2622 acaaacaaaaggtgataatttacatatg 2595

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 119/148 (80%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                            
Query: 147      catatccttttgacaactagcaatctactacaccacagaagttctacaagtctagtttta 206
                ||||||||||||||||||||||| |  ||| |||||| | |||||  ||  |||| ||||
Sbjct: 21999575 catatccttttgacaactagcaaac--ctataccacaaatgttctgtaaaactagcttta 21999518

                                                                            
Query: 207      cacaac--ttattgcacccatgaagctgcatcacttgattcctgcatagcaaggctatat 264
                || ||   |||||||| | | |||||| ||||||||||||| |||| | |||||||||| 
Sbjct: 21999517 cataatcattattgcatcaaggaagcttcatcacttgattcatgcacaccaaggctatag 21999458

                                            
Query: 265      gtgaacataaggcgataatgtacatatg 292
                   |||| |||| |||||| ||||||||
Sbjct: 21999457 acaaacaaaaggtgataatttacatatg 21999430

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>dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0046L23
          Length = 100041

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 119/148 (80%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                         
Query: 147   catatccttttgacaactagcaatctactacaccacagaagttctacaagtctagtttta 206
             ||||||||||||||||||||||| |  ||| |||||| | |||||  ||  |||| ||||
Sbjct: 48197 catatccttttgacaactagcaaac--ctataccacaaatgttctgtaaaactagcttta 48140

                                                                         
Query: 207   cacaac--ttattgcacccatgaagctgcatcacttgattcctgcatagcaaggctatat 264
             || ||   |||||||| | | |||||| ||||||||||||| |||| | |||||||||| 
Sbjct: 48139 cataatcattattgcatcaaggaagcttcatcacttgattcatgcacaccaaggctatag 48080

                                         
Query: 265   gtgaacataaggcgataatgtacatatg 292
                |||| |||| |||||| ||||||||
Sbjct: 48079 acaaacaaaaggtgataatttacatatg 48052

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>dbj|AK064910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M07, full
            insert sequence
          Length = 2833

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 119/148 (80%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                        
Query: 147  catatccttttgacaactagcaatctactacaccacagaagttctacaagtctagtttta 206
            ||||||||||||||||||||||| |  ||| |||||| | |||||  ||  |||| ||||
Sbjct: 2741 catatccttttgacaactagcaaac--ctataccacaaatgttctgtaaaactagcttta 2684

                                                                        
Query: 207  cacaac--ttattgcacccatgaagctgcatcacttgattcctgcatagcaaggctatat 264
            || ||   |||||||| | | |||||| ||||||||||||| |||| | |||||||||| 
Sbjct: 2683 cataatcattattgcatcaaggaagcttcatcacttgattcatgcacaccaaggctatag 2624

                                        
Query: 265  gtgaacataaggcgataatgtacatatg 292
               |||| |||| |||||| ||||||||
Sbjct: 2623 acaaacaaaaggtgataatttacatatg 2596

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>dbj|AB073546.1| Oryza sativa (japonica cultivar-group) OsCRY1a mRNA for cryptochrome
            1a, complete cds
          Length = 2587

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 119/148 (80%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                        
Query: 147  catatccttttgacaactagcaatctactacaccacagaagttctacaagtctagtttta 206
            ||||||||||||||||||||||| |  ||| |||||| | |||||  ||  |||| ||||
Sbjct: 2432 catatccttttgacaactagcaaac--ctataccacaaatgttctgtaaaactagcttta 2375

                                                                        
Query: 207  cacaac--ttattgcacccatgaagctgcatcacttgattcctgcatagcaaggctatat 264
            || ||   |||||||| | | |||||| ||||||||||||| |||| | |||||||||| 
Sbjct: 2374 cataatcattattgcatcaaggaagcttcatcacttgattcatgcacaccaaggctatag 2315

                                        
Query: 265  gtgaacataaggcgataatgtacatatg 292
               |||| |||| |||||| ||||||||
Sbjct: 2314 acaaacaaaaggtgataatttacatatg 2287

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>dbj|AB024337.1| Oryza sativa (japonica cultivar-group) mRNA for blue-light
            photoreceptor, complete cds
          Length = 2797

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 119/148 (80%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                        
Query: 147  catatccttttgacaactagcaatctactacaccacagaagttctacaagtctagtttta 206
            ||||||||||||||||||||||| |  ||| |||||| | |||||  ||  |||| ||||
Sbjct: 2706 catatccttttgacaactagcaaac--ctataccacaaatgttctgtaaaactagcttta 2649

                                                                        
Query: 207  cacaac--ttattgcacccatgaagctgcatcacttgattcctgcatagcaaggctatat 264
            || ||   |||||||| | | |||||| ||||||||||||| |||| | |||||||||| 
Sbjct: 2648 cataatcattattgcatcaaggaagcttcatcacttgattcatgcacaccaaggctatag 2589

                                        
Query: 265  gtgaacataaggcgataatgtacatatg 292
               |||| |||| |||||| ||||||||
Sbjct: 2588 acaaacaaaaggtgataatttacatatg 2561

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>emb|AL591521.8| Human DNA sequence from clone RP5-965F6 on chromosome 1 Contains the 5'
             end of a novel gene and a thioredoxin (TXN) pseudogene,
             complete sequence
          Length = 97110

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 22    tgtacactctgccaaaggtttgtct 46
             |||||||||||||| ||||||||||
Sbjct: 75466 tgtacactctgccacaggtttgtct 75490

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>ref|NM_130382.1| Arabidopsis thaliana ATGPX4 (GLUTATHIONE PEROXIDASE 4); glutathione
           peroxidase AT2G48150 (ATGPX4) mRNA, complete cds
          Length = 734

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  tcttggtcggcaaagatggc 89
           ||||||||||||||||||||
Sbjct: 487 tcttggtcggcaaagatggc 506

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>ref|XM_632878.1| Dictyostelium discoideum hypothetical protein (DDB0186717), partial
           mRNA
          Length = 2679

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   ttacaatttttatttgtaca 27
           ||||||||||||||||||||
Sbjct: 143 ttacaatttttatttgtaca 124

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>gb|AC157569.12| Mus musculus chromosome 3, clone RP23-434M21, complete sequence
          Length = 205286

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     aatttttatttgtacactct 31
              ||||||||||||||||||||
Sbjct: 123939 aatttttatttgtacactct 123920

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>gb|AC162527.5| Mus musculus BAC clone RP23-30M17 from chromosome 14, complete sequence
          Length = 200348

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    cacagaagttctacaagtct 199
              ||||||||||||||||||||
Sbjct: 128812 cacagaagttctacaagtct 128831

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>gb|AC123985.10| Mus musculus chromosome 14, clone RP23-154G18, complete sequence
          Length = 229313

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    cacagaagttctacaagtct 199
              ||||||||||||||||||||
Sbjct: 163309 cacagaagttctacaagtct 163290

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>gb|AC069444.17| Homo sapiens 3 BAC RP11-169N13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165093

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     aaagatggcaagaaccaaag 100
              ||||||||||||||||||||
Sbjct: 125567 aaagatggcaagaaccaaag 125548

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>gb|AF364606.1| Homo sapiens orphan nuclear receptors (NR1I2) gene, complete cds,
             alternatively spliced
          Length = 86081

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    aaagatggcaagaaccaaag 100
             ||||||||||||||||||||
Sbjct: 28266 aaagatggcaagaaccaaag 28285

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>gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 171236

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   aaggctatatgtgaacataa 274
             ||||||||||||||||||||
Sbjct: 92582 aaggctatatgtgaacataa 92563

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>gb|AC093429.2| Homo sapiens chromosome 1 clone RP11-465K1, complete sequence
          Length = 182165

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    ggacaaaagctttccacttg 355
              ||||||||||||||||||||
Sbjct: 132261 ggacaaaagctttccacttg 132242

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>gb|BT003735.1| Arabidopsis thaliana At2g48150 mRNA, complete cds
          Length = 513

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  tcttggtcggcaaagatggc 89
           ||||||||||||||||||||
Sbjct: 413 tcttggtcggcaaagatggc 432

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>gb|AY088692.1| Arabidopsis thaliana clone 92074 mRNA, complete sequence
          Length = 734

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  tcttggtcggcaaagatggc 89
           ||||||||||||||||||||
Sbjct: 487 tcttggtcggcaaagatggc 506

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>gb|AC009299.5| Homo sapiens BAC clone RP11-26B22 from 2, complete sequence
          Length = 169697

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     atttttatttgtacactctg 32
              ||||||||||||||||||||
Sbjct: 115038 atttttatttgtacactctg 115057

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>dbj|AK118448.1| Arabidopsis thaliana At2g48150 mRNA for putative glutathione
           peroxidase, complete cds, clone: RAFL19-69-D09
          Length = 711

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  tcttggtcggcaaagatggc 89
           ||||||||||||||||||||
Sbjct: 464 tcttggtcggcaaagatggc 483

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>emb|AL672052.7| Mouse DNA sequence from clone RP23-60A20 on chromosome X, complete
              sequence
          Length = 178995

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    gatgactgggaaagctggtt 416
              ||||||||||||||||||||
Sbjct: 117408 gatgactgggaaagctggtt 117427

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>emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chromosome 2, complete
             sequence
          Length = 209914

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    atttttatttgtacactctg 32
             ||||||||||||||||||||
Sbjct: 96772 atttttatttgtacactctg 96791


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,085,477
Number of Sequences: 3902068
Number of extensions: 4085477
Number of successful extensions: 76183
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76105
Number of HSP's gapped (non-prelim): 76
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result