Clone Name | rbastl01g04 |
---|---|
Clone Library Name | barley_pub |
>Y1629_HAEIN (P45280) Hypothetical protein HI1629| Length = 212 Score = 30.8 bits (68), Expect = 0.81 Identities = 18/50 (36%), Positives = 28/50 (56%) Frame = -3 Query: 208 FSQFGCTGLFFFRQMHGLPSMPFSLV*GDVRRVTVCGYGWVDFCSGSCTI 59 FSQ+G LF R + GL + P +V G RRV+ + +DFC+ ++ Sbjct: 119 FSQYGNRVLFVARFLPGLRA-PIYMVSGITRRVSYVRFVLIDFCAAIISV 167
>NU4M_APILI (P34853) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 447 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/82 (25%), Positives = 43/82 (52%) Frame = -2 Query: 272 VDWFMPFRTWLSGLIISLRVVLLTVWLHGLVFFPADAWLALNAIFLGMRRRPTCNCLRIW 93 +DW F LS + S +++LT+W+ GL+F + +LN +F+ + + + + Sbjct: 54 IDWIYIFCN-LSFNMYSYGLIMLTLWIFGLIFISLNN-NSLNCLFMNLLLMISLLLVFLS 111 Query: 92 MG*FLQWLMYYCGHRYIIVVFF 27 M L +L Y G ++++F+ Sbjct: 112 MNLLLFYLFYEFG---LLLIFY 130
>DNRE_BPT4 (P04523) DNA replication protein (Protein Gp69)| Length = 392 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Frame = +3 Query: 99 PQTVTR-RTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYSQTDDQT*QPSPKWHEPVNS 275 P+T TR + S +N E K K K S+ + + +P WHEP+ S Sbjct: 289 PETKTRMKNSQRIAQNRAERKARQSEVMKKFYSNGGNKKISEGTSRAQRKAPHWHEPLKS 348 Query: 276 PSHE 287 HE Sbjct: 349 EIHE 352
>GBGT1_MOUSE (Q8VI38) Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1| (EC 2.4.1.88) (Forssman glycolipid synthetase) Length = 347 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/72 (30%), Positives = 28/72 (38%) Frame = +3 Query: 174 KKNKPVQPNCEKDYSQTDDQT*QPSPKWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEK 353 +K KP+QP + Y P PK E H P L L P P + E T + Sbjct: 53 RKEKPLQPVTQLQY---------PQPKLLE------HGPTELLTLTPWLAPIVSEGTFDP 97 Query: 354 HFKKCGQAPVNL 389 K P+NL Sbjct: 98 ELLKSMYQPLNL 109
>STP2_PANTR (Q9N1A7) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 133 Score = 29.6 bits (65), Expect = 1.8 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 8/106 (7%) Frame = +3 Query: 60 IVHEPLQKSTHPYPQTVTRRTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYS------- 218 I H L ++ P T TR T C R ++ P ++ + Sbjct: 10 ITHTQLHSNSQPQSCTCTRHRQ--TFSQSCRQSHCGSRSRSSSQSPASHRNPTGAHSSSG 67 Query: 219 -QTDDQT*QPSPKWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEK 353 Q+ P PK H+ + H P+R +L CS P ++ E K Sbjct: 68 HQSQSPNTSPPPKRHKKTMNSHHSPMRPTIL-HCSCPKNRKNLEGK 112
>RP1_BOVIN (Q8MJ05) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein| homolog) Length = 2105 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Frame = +1 Query: 154 ASHASAGKKTSPCSQTVRRTTRKLMIKPDN-QVRNGM----NQSTHPVMSHC 294 +SH S+GK+ Q+ R TT+ + DN R GM N S + HC Sbjct: 954 SSHTSSGKRNDSILQSNRHTTKSASLTGDNLGKRVGMSFDKNSSEELIQDHC 1005
>Y3474_PSEAE (O68826) Hypothetical membrane protein PA3474| Length = 286 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -2 Query: 245 WLSGLIISLRVVLLTVWLHGLVFFPADAWLALNAIFLG 132 +L+G + S VL V L GLVF P W + F+G Sbjct: 21 YLAGQVDSYFAVLTRVLLAGLVFLPLTRWRGVEPRFVG 58
>TAGH_ENTFA (Q831L8) Teichoic acids export ATP-binding protein tagH (EC| 3.6.3.40) Length = 447 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Frame = +1 Query: 16 TISVKNTTIMYLCPQ*YMSHCKNQPIHIRKQ-LH----VGRLLIPRKMALRASHASAGKK 180 T+ K+ I+ LC Y+S + I + +H + R+ +P K+A + ++A K Sbjct: 306 TLGTKSLLILLLCMIFYVSLTFVKGISLTTAFIHPAETIQRIFVPEKVAGKDTNAVKTTK 365 Query: 181 TSPCSQTVRRTTRKLMIKPDNQVRNGMNQ 267 T P S R ++ P N N ++ Sbjct: 366 TKPASTKESRQQEEVQPSPTNVPENNNSE 394
>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA cleavage| complex II protein Pcf11) (Fragment) Length = 1654 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Frame = +3 Query: 171 RKKNKPVQPNCEKDYSQTDDQT*QPSPKWHEPVNSPSHEPLRCL---LLAPCSVPTLQE 338 R K P+C +DY T PSP PV +P + L + L PC P ++E Sbjct: 1567 RVDGKIYHPSCYEDYQNTSSFDCTPSPS-KTPVENPLNIMLNIVKNELQEPCDSPKVKE 1624
>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1003 Score = 28.9 bits (63), Expect = 3.1 Identities = 26/87 (29%), Positives = 33/87 (37%) Frame = +3 Query: 66 HEPLQKSTHPYPQTVTRRTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYSQTDDQT*QP 245 H P P PQT+ SP E+G P + +P P+ SQT Sbjct: 291 HSPEDPVLPPPPQTLPLDVSPGLPESGTRS-PGLLSPTFRPGIPS-----SQT------V 338 Query: 246 SPKWHEPVNSPSHEPLRCLLLAPCSVP 326 P +P SPS P R +PC P Sbjct: 339 PPPLRKPPRSPSRSPSRSPNRSPCLPP 365
>MAX_DROME (P91664) Protein max (Myc-associated factor X) (dMax)| Length = 161 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 94 HIRKQLHVGRLLIPRKMALRASHASAGKKTSPCSQTVRR 210 HI++ R +P +AS A KKT+ C QT+RR Sbjct: 54 HIKESFTNLREAVPTLKGEKASRAQILKKTTECIQTMRR 92
>MICA2_HUMAN (O94851) Protein MICAL-2| Length = 1124 Score = 28.5 bits (62), Expect = 4.0 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Frame = +3 Query: 24 SKEYNNNVSVSTIVHEPLQKSTHPYPQTVTRRTSPHTKENGIEG--KPCICRKKNKPVQP 197 SKE N V ++ ++ L K + TR S +E + G KP +C PV Sbjct: 706 SKEGGNQNKVKSMANQLLAKF-----EESTRNPSLMKQERRVSGIGKPVLCSSSGPPVHS 760 Query: 198 NCEKDYSQTDDQT*QPSP 251 C K ++ T PSP Sbjct: 761 CCPK----PEEATPSPSP 774
>METE_HAEIN (P45331) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 756 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -1 Query: 366 IS*NASLLWSPVMLELSKELKEDTAVAHDWVS*LVHAISDLVV 238 I+ + SLL +P LE+ +LKE + W+S + + +L V Sbjct: 314 IAPSCSLLHTPFDLEVEVQLKEKNTALYSWLSFTLQKVEELNV 356
>UL87_EBV (P25215) Protein BcRF1| Length = 575 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 12/54 (22%) Frame = +1 Query: 64 YMSHCKNQ------PI------HIRKQLHVGRLLIPRKMALRASHASAGKKTSP 189 +++ CK+Q PI HIR++L +GR + R++ L +H KKT+P Sbjct: 516 FLTRCKHQVNLRQSPIFLTLLRHIRRRLGLGRASVKREITLLLAHLR--KKTAP 567
>STK25_HUMAN (O00506) Serine/threonine-protein kinase 25 (EC 2.7.11.1) (Sterile| 20/oxidant stress-response kinase 1) (Ste20/oxidant stress response kinase 1) (SOK-1) (Ste20-like kinase) Length = 426 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +3 Query: 261 EPVNSPSHEPLRCLLLAPCSVPTLQETTEEKHFKKCGQAPVN 386 EP NS H P+R L L P + P E K FK+ +A +N Sbjct: 212 EPPNSDLH-PMRVLFLIPKNSPPTLEGQHSKPFKEFVEACLN 252
>STP2_GORGO (Q9N1A5) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 133 Score = 28.1 bits (61), Expect = 5.3 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 6/108 (5%) Frame = +3 Query: 60 IVHEPLQKSTHPYPQTVTR--RTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYSQTDDQ 233 I H L ++ P +T TR +T + G ++ N +S + Q Sbjct: 10 ITHTQLHSNSQPQSRTCTRHCQTFSQSCRQSHRGSRSRSSSQSPASHRNPTGAHSSSGHQ 69 Query: 234 T*QPS----PKWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEKHFKK 365 + P+ PK H+ + H P R +L CS P ++ E K KK Sbjct: 70 SQSPNTSPPPKRHKKTMNSHHSPRRPTIL-HCSCPKNRKNLEGKLKKK 116
>STP2_HUMAN (Q05952) Nuclear transition protein 2 (TP-2) (TP2)| Length = 138 Score = 27.7 bits (60), Expect = 6.9 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 6/108 (5%) Frame = +3 Query: 60 IVHEPLQKSTHPYPQTVTR--RTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYSQTDDQ 233 I H L ++ P +T TR +T + G ++ N +S + Q Sbjct: 10 ITHTQLHSNSQPQSRTCTRHCQTFSQSCRQSHRGSRSQSSSQSPASHRNPTGAHSSSGHQ 69 Query: 234 T*QPS----PKWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEKHFKK 365 + P+ PK H+ + H P+R +L C P ++ E K KK Sbjct: 70 SQSPNTSPPPKRHKKTMNSHHSPMRPTIL-HCRCPKNRKNLEGKLKKK 116
>CHLE_MIMIV (Q5UR02) Probable cholinesterase precursor (EC 3.1.1.8)| (Acylcholine acylhydrolase) Length = 579 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +3 Query: 252 KWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEE 350 KWH P+N+ ++P +AP +VP + +E+ Sbjct: 71 KWHNPLNTTEYKPKCPQYVAPGTVPEPRGISED 103
>UBP5_SCHPO (Q09879) Probable ubiquitin carboxyl-terminal hydrolase 5 (EC| 3.1.2.15) (Ubiquitin thioesterase 5) (Ubiquitin-specific processing protease 5) (Deubiquitinating enzyme 5) Length = 1108 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/43 (23%), Positives = 24/43 (55%) Frame = +3 Query: 9 IKNNISKEYNNNVSVSTIVHEPLQKSTHPYPQTVTRRTSPHTK 137 + + +++ NVS+ +HE L+++ Y ++ +R + H K Sbjct: 21 LNEKLKEDFEENVSIDVKIHEELRRALPDYEESGFQRFTWHIK 63
>MTG8_MOUSE (Q61909) Protein CBFA2T1 (MTG8 protein)| Length = 577 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = +3 Query: 114 RRTSPHTKENGIEGKPCICRKKNK-PVQPNCEKDYSQTDDQT*QPSPKWHEPVNSPSHEP 290 RRT TKENG + +P +K P + + YS + + QP+ H P H Sbjct: 215 RRTPDRTKENGFDREPLHSEHPSKRPCTISPGQRYSPNNGLSYQPNGLPHPTPPPPQHYR 274 Query: 291 LRCLLLA 311 L + +A Sbjct: 275 LDDMAIA 281
>VU47_HHV6Z (P52549) Glycoprotein U47 precursor| Length = 738 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +3 Query: 81 KSTHPYPQTVTRRTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYSQTD 227 ++T+ YPQT+T R++ K++ E R+ NK + N DY TD Sbjct: 661 QTTNIYPQTITERSTDVKKKSSTES-----REANKTLPGN---DYRVTD 701
>PVRL2_HUMAN (Q92692) Poliovirus receptor-related protein 2 precursor (Herpes| virus entry mediator B) (HveB) (Nectin-2) (CD112 antigen) Length = 538 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +2 Query: 80 KINPSISANSYTSDVSSYQGK 142 KINP A SY+S SYQGK Sbjct: 508 KINPIYDALSYSSPSDSYQGK 528
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Frame = +3 Query: 9 IKNNISKEYNNNVSVSTIVHEPLQKSTH-----PYPQTVTRRTSPHTKENGIE 152 ++ N + Y + V+ + EPL++S+H P +T T P +E +E Sbjct: 167 VQENANSAYYDAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKHLE 219
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%) Frame = +3 Query: 9 IKNNISKEYNNNVSVSTIVHEPLQKSTH-----PYPQTVTRRTSPHTKENGIE 152 ++ N + Y V+ + EPL++S+H P +T T P +E +E Sbjct: 167 VQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLE 219
>MTG8_HUMAN (Q06455) Protein CBFA2T1 (Protein MTG8) (Protein ETO) (Eigth twenty| one protein) (Cyclin D-related protein) (Zinc finger MYND domain-containing protein 2) Length = 604 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = +3 Query: 114 RRTSPHTKENGIEGKPCICRKKNK-PVQPNCEKDYSQTDDQT*QPSPKWHEPVNSPSHEP 290 RRT TKENG + +P +K P + + YS + + QP+ H P H Sbjct: 242 RRTPDRTKENGFDREPLHSEHPSKRPCTISPGQRYSPNNGLSYQPNGLPHPTPPPPQHYR 301 Query: 291 LRCLLLA 311 L + +A Sbjct: 302 LDDMAIA 308
>UREE_SYNPV (O87398) Urease accessory protein ureE| Length = 175 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/64 (28%), Positives = 30/64 (46%) Frame = +1 Query: 7 PSKTISVKNTTIMYLCPQ*YMSHCKNQPIHIRKQLHVGRLLIPRKMALRASHASAGKKTS 186 P + V+ +++ L Y H N+ H+ +LH G LL+ + L A S G + S Sbjct: 86 PEPLLRVQADSVLELLQAAY--HLGNR--HVALELHDGELLLLKDSVLEAMLRSRGLRVS 141 Query: 187 PCSQ 198 C + Sbjct: 142 ACER 145
>STP2_PONPY (Q9N1A4) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 138 Score = 27.3 bits (59), Expect = 9.0 Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 26/123 (21%) Frame = +3 Query: 75 LQKSTHPYPQTVTRRTSPHTKENGIEGKPCICRKKNKPVQPNCEKD----YSQTDDQT*- 239 + TH P T T+ S +++ PC C + + +C + +SQ Q+ Sbjct: 1 MDTKTHSLPITHTQLHS-NSQPQSRTCSPCTCTRHRQTFSQSCRQSQRGSWSQNSSQSPA 59 Query: 240 ---------------------QPSPKWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEKH 356 P PK H+ + H P R +L CS P ++ E K Sbjct: 60 SHHNPTGAHSSSGHQSQSPNDSPPPKRHKKTMNSHHSPTRPTIL-HCSCPKNRKNFEGKL 118 Query: 357 FKK 365 KK Sbjct: 119 NKK 121
>CORO_YEAST (Q06440) Coronin-like protein| Length = 651 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = +3 Query: 114 RRTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYSQTDDQT*QPSPKWHEPVNSPS 281 R P T+E +E K QP EK S+++ + Q +PK P+ S S Sbjct: 416 RPQQPTTQETALE---------EKKEQPKVEKPISESEKEVKQEAPKSPSPLKSAS 462
>STK25_MOUSE (Q9Z2W1) Serine/threonine-protein kinase 25 (EC 2.7.11.1) (Sterile| 20/oxidant stress-response kinase 1) (Ste20/oxidant stress response kinase 1) (SOK-1) (Ste20-like kinase) Length = 426 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +3 Query: 261 EPVNSPSHEPLRCLLLAPCSVPTLQETTEEKHFKKCGQAPVN 386 EP NS H P+R L L P + P E K FK+ +A +N Sbjct: 212 EPPNSDLH-PMRVLFLIPKNNPPTLEGHHSKPFKEFVEACLN 252
>FA8_CANFA (O18806) Coagulation factor VIII precursor (Procoagulant component)| Length = 2343 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -1 Query: 357 NASLLWSPVMLELSKELKEDTAVAHD 280 N++ +W +MLE + E KE T++ H+ Sbjct: 1037 NSTSVWQDIMLERNTEFKEVTSLIHN 1062
>CHS1_YEAST (P08004) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 1) Length = 1131 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = -2 Query: 254 FRTWLSGLIISLRVVLLTVWLHGLVFFPADAWLALNAIFLGMR 126 +R W SG I R +LLTV L F +W +L++ FL R Sbjct: 776 YRVWSSGHNIG-RKLLLTVEFFYLFFNTLISWFSLSSFFLFFR 817 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,025,066 Number of Sequences: 219361 Number of extensions: 1261889 Number of successful extensions: 3700 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3598 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3698 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)