ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR388611.1| Gallus gallus finished cDNA, clone ChEST610e10 48 0.022
2gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
3gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
4emb|AL592464.24| Human DNA sequence from clone RP11-740P5 on chr... 42 1.3
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
6gb|AC020709.4|AC020709 Homo sapiens clone RP11-425F18, complete ... 42 1.3
7dbj|AK064328.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
8gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 40 5.3
9gb|BT012856.1| Lycopersicon esculentum clone 113942F, mRNA sequence 40 5.3
10gb|AF268619.5| Homo sapiens chromosome 8 clone RP11-122C21 map q... 40 5.3
11gb|AF181450.5| Homo sapiens chromosome 8 clone GS1-5L10 map q21.... 40 5.3
12gb|AF545858.1| Mus musculus TDPOZ1 (Tdpoz1) and TDPOZ2 (Tdpoz2) ... 40 5.3
13gb|AC130840.3| Mus musculus BAC clone RP24-443G4 from chromosome... 40 5.3
14gb|AC137546.33| Medicago truncatula clone mth2-24g3, complete se... 40 5.3
15ref|XM_501984.1| Yarrowia lipolytica CLIB122, YALI0C18645g predi... 40 5.3
16emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on ch... 40 5.3
17emb|AL132797.2|DMBN25G24 Drosophila melanogaster BAC clone BACN2... 40 5.3
18gb|AC103680.2| Homo sapiens chromosome 8, clone RP11-122C21, com... 40 5.3
19gb|AC158504.10| Medicago truncatula clone mth2-151m4, complete s... 40 5.3
20emb|CR601492.1| full-length cDNA clone CS0DF022YM20 of Fetal bra... 40 5.3
21gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Roswell... 40 5.3
22gb|AF198490.1|AF198490 Homo sapiens 8q22.1 region and MTG8 (CBFA... 40 5.3
23gb|AC073624.28| Homo sapiens chromosome 17, clone RP11-537K14, c... 40 5.3
24gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H... 40 5.3
25emb|AJ538900.1|NTA538900 Nicotiana tabacum cDNA-AFLP-fragment BT... 40 5.3
26dbj|AB083028.1| Glycine max mRNA for syringolide-induced protein... 40 5.3
27dbj|AB083027.1| Glycine max mRNA for syringolide-induced protein... 40 5.3
28gb|AC149137.3| Xenopus tropicalis clone CH216-3L19, complete seq... 40 5.3
29gb|AF131817.1|AF131817 Homo sapiens clone 25023 mRNA sequence 40 5.3
30gb|AE003423.2| Drosophila melanogaster chromosome X, section 7 o... 40 5.3
31emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 5.3

>emb|CR388611.1| Gallus gallus finished cDNA, clone ChEST610e10
          Length = 760

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 334 aggagaccacagaagagaagcatt 357
           ||||||||||||||||||||||||
Sbjct: 10  aggagaccacagaagagaagcatt 33



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>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05,
             complete sequence
          Length = 145044

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 306   ttagctccttgctcagttccaacattacaggag 338
             ||||||||||||| || |||||| |||||||||
Sbjct: 27134 ttagctccttgcttagatccaacgttacaggag 27102



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>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01,
              complete sequence
          Length = 141661

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 306    ttagctccttgctcagttccaacattacaggag 338
              ||||||||||||| || |||||| |||||||||
Sbjct: 136661 ttagctccttgcttagatccaacgttacaggag 136629



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>emb|AL592464.24| Human DNA sequence from clone RP11-740P5 on chromosome 1, complete
             sequence
          Length = 120028

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 66    catgagccactgcaaaaatca 86
             |||||||||||||||||||||
Sbjct: 24065 catgagccactgcaaaaatca 24045



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 306     ttagctccttgctcagttccaacattacaggag 338
               ||||||||||||| || |||||| |||||||||
Sbjct: 3149417 ttagctccttgcttagatccaacgttacaggag 3149385



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>gb|AC020709.4|AC020709 Homo sapiens clone RP11-425F18, complete sequence
          Length = 184104

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 66    catgagccactgcaaaaatca 86
             |||||||||||||||||||||
Sbjct: 14270 catgagccactgcaaaaatca 14250



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>dbj|AK064328.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F08, full
            insert sequence
          Length = 1904

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 306  ttagctccttgctcagttccaacattacaggag 338
            ||||||||||||| || |||||| |||||||||
Sbjct: 1534 ttagctccttgcttagatccaacgttacaggag 1502



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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     agtacatgagccactgcaaa 81
              ||||||||||||||||||||
Sbjct: 154719 agtacatgagccactgcaaa 154738



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>gb|BT012856.1| Lycopersicon esculentum clone 113942F, mRNA sequence
          Length = 1029

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 348 gagaagcatttcaagaaatg 367
           ||||||||||||||||||||
Sbjct: 487 gagaagcatttcaagaaatg 506



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>gb|AF268619.5| Homo sapiens chromosome 8 clone RP11-122C21 map q21.3, complete sequence
          Length = 151277

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     cagtaaagaatacaacaata 42
              ||||||||||||||||||||
Sbjct: 133411 cagtaaagaatacaacaata 133430



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>gb|AF181450.5| Homo sapiens chromosome 8 clone GS1-5L10 map q21.3, complete sequence
          Length = 123088

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 23   cagtaaagaatacaacaata 42
            ||||||||||||||||||||
Sbjct: 5199 cagtaaagaatacaacaata 5218



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>gb|AF545858.1| Mus musculus TDPOZ1 (Tdpoz1) and TDPOZ2 (Tdpoz2) genes, complete cds
          Length = 124933

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   gagaagcatttcaagaaatg 367
             ||||||||||||||||||||
Sbjct: 42014 gagaagcatttcaagaaatg 42033



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>gb|AC130840.3| Mus musculus BAC clone RP24-443G4 from chromosome 3, complete sequence
          Length = 175133

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   gagaagcatttcaagaaatg 367
             ||||||||||||||||||||
Sbjct: 42948 gagaagcatttcaagaaatg 42929



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>gb|AC137546.33| Medicago truncatula clone mth2-24g3, complete sequence
          Length = 123291

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 125    tcctcataccaaggaaaatggcat 148
              ||||||||||||| ||||||||||
Sbjct: 101045 tcctcataccaagaaaaatggcat 101022



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>ref|XM_501984.1| Yarrowia lipolytica CLIB122, YALI0C18645g predicted mRNA
          Length = 2925

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 345  gaagagaagcatttcaagaa 364
            ||||||||||||||||||||
Sbjct: 2050 gaagagaagcatttcaagaa 2069



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>emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on chromosome 13, complete
              sequence
          Length = 166509

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    tgtcttcttttagctccttg 316
              ||||||||||||||||||||
Sbjct: 134541 tgtcttcttttagctccttg 134522



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>emb|AL132797.2|DMBN25G24 Drosophila melanogaster BAC clone BACN25G24
          Length = 38889

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  caaccaagtccgaaatggca 259
            ||||||||||||||||||||
Sbjct: 4455 caaccaagtccgaaatggca 4474



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>gb|AC103680.2| Homo sapiens chromosome 8, clone RP11-122C21, complete sequence
          Length = 151281

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     cagtaaagaatacaacaata 42
              ||||||||||||||||||||
Sbjct: 133413 cagtaaagaatacaacaata 133432



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>gb|AC158504.10| Medicago truncatula clone mth2-151m4, complete sequence
          Length = 117136

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 125 tcctcataccaaggaaaatggcat 148
           ||||||||||||| ||||||||||
Sbjct: 753 tcctcataccaagaaaaatggcat 730



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>emb|CR601492.1| full-length cDNA clone CS0DF022YM20 of Fetal brain of Homo sapiens
            (human)
          Length = 1209

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   cagtaaagaatacaacaata 42
            ||||||||||||||||||||
Sbjct: 1186 cagtaaagaatacaacaata 1167



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>gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 177724

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   caaccaagtccgaaatggca 259
             ||||||||||||||||||||
Sbjct: 60972 caaccaagtccgaaatggca 60991



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>gb|AF198490.1|AF198490 Homo sapiens 8q22.1 region and MTG8 (CBFA2T1) gene, partial cds
          Length = 32885

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   cagtaaagaatacaacaata 42
            ||||||||||||||||||||
Sbjct: 5108 cagtaaagaatacaacaata 5089



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>gb|AC073624.28| Homo sapiens chromosome 17, clone RP11-537K14, complete sequence
          Length = 145512

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   agccactgcggtgtcttctt 305
             ||||||||||||||||||||
Sbjct: 26976 agccactgcggtgtcttctt 26957



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>gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H3 map 14q31, complete sequence
          Length = 190773

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     gtaaagaatacaacaataat 44
              ||||||||||||||||||||
Sbjct: 157652 gtaaagaatacaacaataat 157671



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>emb|AJ538900.1|NTA538900 Nicotiana tabacum cDNA-AFLP-fragment BT2-M33-006
          Length = 394

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 348 gagaagcatttcaagaaatg 367
           ||||||||||||||||||||
Sbjct: 95  gagaagcatttcaagaaatg 114



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>dbj|AB083028.1| Glycine max mRNA for syringolide-induced protein 1-3-1B, complete
           cds
          Length = 1243

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 348 gagaagcatttcaagaaatg 367
           ||||||||||||||||||||
Sbjct: 617 gagaagcatttcaagaaatg 636



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>dbj|AB083027.1| Glycine max mRNA for syringolide-induced protein 1-3-1A, complete
           cds
          Length = 1191

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 348 gagaagcatttcaagaaatg 367
           ||||||||||||||||||||
Sbjct: 574 gagaagcatttcaagaaatg 593



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>gb|AC149137.3| Xenopus tropicalis clone CH216-3L19, complete sequence
          Length = 155697

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    cagtaaagaatacaacaata 42
             ||||||||||||||||||||
Sbjct: 34143 cagtaaagaatacaacaata 34162



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>gb|AF131817.1|AF131817 Homo sapiens clone 25023 mRNA sequence
          Length = 1466

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   cagtaaagaatacaacaata 42
            ||||||||||||||||||||
Sbjct: 1423 cagtaaagaatacaacaata 1404



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>gb|AE003423.2| Drosophila melanogaster chromosome X, section 7 of 74 of the complete
             sequence
          Length = 292830

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   caaccaagtccgaaatggca 259
             ||||||||||||||||||||
Sbjct: 20651 caaccaagtccgaaatggca 20670



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 345     gaagagaagcatttcaagaa 364
               ||||||||||||||||||||
Sbjct: 2559333 gaagagaagcatttcaagaa 2559352


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,228,937
Number of Sequences: 3902068
Number of extensions: 4228937
Number of successful extensions: 134371
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134258
Number of HSP's gapped (non-prelim): 113
length of query: 396
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 374
effective length of database: 17,147,199,772
effective search space: 6413052714728
effective search space used: 6413052714728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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