Clone Name | rbastl01g04 |
---|---|
Clone Library Name | barley_pub |
>emb|CR388611.1| Gallus gallus finished cDNA, clone ChEST610e10 Length = 760 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 334 aggagaccacagaagagaagcatt 357 |||||||||||||||||||||||| Sbjct: 10 aggagaccacagaagagaagcatt 33
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 306 ttagctccttgctcagttccaacattacaggag 338 ||||||||||||| || |||||| ||||||||| Sbjct: 27134 ttagctccttgcttagatccaacgttacaggag 27102
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 306 ttagctccttgctcagttccaacattacaggag 338 ||||||||||||| || |||||| ||||||||| Sbjct: 136661 ttagctccttgcttagatccaacgttacaggag 136629
>emb|AL592464.24| Human DNA sequence from clone RP11-740P5 on chromosome 1, complete sequence Length = 120028 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 catgagccactgcaaaaatca 86 ||||||||||||||||||||| Sbjct: 24065 catgagccactgcaaaaatca 24045
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 306 ttagctccttgctcagttccaacattacaggag 338 ||||||||||||| || |||||| ||||||||| Sbjct: 3149417 ttagctccttgcttagatccaacgttacaggag 3149385
>gb|AC020709.4|AC020709 Homo sapiens clone RP11-425F18, complete sequence Length = 184104 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 catgagccactgcaaaaatca 86 ||||||||||||||||||||| Sbjct: 14270 catgagccactgcaaaaatca 14250
>dbj|AK064328.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F08, full insert sequence Length = 1904 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 306 ttagctccttgctcagttccaacattacaggag 338 ||||||||||||| || |||||| ||||||||| Sbjct: 1534 ttagctccttgcttagatccaacgttacaggag 1502
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome Length = 2572079 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 agtacatgagccactgcaaa 81 |||||||||||||||||||| Sbjct: 154719 agtacatgagccactgcaaa 154738
>gb|BT012856.1| Lycopersicon esculentum clone 113942F, mRNA sequence Length = 1029 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gagaagcatttcaagaaatg 367 |||||||||||||||||||| Sbjct: 487 gagaagcatttcaagaaatg 506
>gb|AF268619.5| Homo sapiens chromosome 8 clone RP11-122C21 map q21.3, complete sequence Length = 151277 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 cagtaaagaatacaacaata 42 |||||||||||||||||||| Sbjct: 133411 cagtaaagaatacaacaata 133430
>gb|AF181450.5| Homo sapiens chromosome 8 clone GS1-5L10 map q21.3, complete sequence Length = 123088 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 cagtaaagaatacaacaata 42 |||||||||||||||||||| Sbjct: 5199 cagtaaagaatacaacaata 5218
>gb|AF545858.1| Mus musculus TDPOZ1 (Tdpoz1) and TDPOZ2 (Tdpoz2) genes, complete cds Length = 124933 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gagaagcatttcaagaaatg 367 |||||||||||||||||||| Sbjct: 42014 gagaagcatttcaagaaatg 42033
>gb|AC130840.3| Mus musculus BAC clone RP24-443G4 from chromosome 3, complete sequence Length = 175133 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gagaagcatttcaagaaatg 367 |||||||||||||||||||| Sbjct: 42948 gagaagcatttcaagaaatg 42929
>gb|AC137546.33| Medicago truncatula clone mth2-24g3, complete sequence Length = 123291 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 tcctcataccaaggaaaatggcat 148 ||||||||||||| |||||||||| Sbjct: 101045 tcctcataccaagaaaaatggcat 101022
>ref|XM_501984.1| Yarrowia lipolytica CLIB122, YALI0C18645g predicted mRNA Length = 2925 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gaagagaagcatttcaagaa 364 |||||||||||||||||||| Sbjct: 2050 gaagagaagcatttcaagaa 2069
>emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on chromosome 13, complete sequence Length = 166509 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 tgtcttcttttagctccttg 316 |||||||||||||||||||| Sbjct: 134541 tgtcttcttttagctccttg 134522
>emb|AL132797.2|DMBN25G24 Drosophila melanogaster BAC clone BACN25G24 Length = 38889 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 caaccaagtccgaaatggca 259 |||||||||||||||||||| Sbjct: 4455 caaccaagtccgaaatggca 4474
>gb|AC103680.2| Homo sapiens chromosome 8, clone RP11-122C21, complete sequence Length = 151281 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 cagtaaagaatacaacaata 42 |||||||||||||||||||| Sbjct: 133413 cagtaaagaatacaacaata 133432
>gb|AC158504.10| Medicago truncatula clone mth2-151m4, complete sequence Length = 117136 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 tcctcataccaaggaaaatggcat 148 ||||||||||||| |||||||||| Sbjct: 753 tcctcataccaagaaaaatggcat 730
>emb|CR601492.1| full-length cDNA clone CS0DF022YM20 of Fetal brain of Homo sapiens (human) Length = 1209 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cagtaaagaatacaacaata 42 |||||||||||||||||||| Sbjct: 1186 cagtaaagaatacaacaata 1167
>gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177724 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 caaccaagtccgaaatggca 259 |||||||||||||||||||| Sbjct: 60972 caaccaagtccgaaatggca 60991
>gb|AF198490.1|AF198490 Homo sapiens 8q22.1 region and MTG8 (CBFA2T1) gene, partial cds Length = 32885 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cagtaaagaatacaacaata 42 |||||||||||||||||||| Sbjct: 5108 cagtaaagaatacaacaata 5089
>gb|AC073624.28| Homo sapiens chromosome 17, clone RP11-537K14, complete sequence Length = 145512 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 agccactgcggtgtcttctt 305 |||||||||||||||||||| Sbjct: 26976 agccactgcggtgtcttctt 26957
>gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H3 map 14q31, complete sequence Length = 190773 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 gtaaagaatacaacaataat 44 |||||||||||||||||||| Sbjct: 157652 gtaaagaatacaacaataat 157671
>emb|AJ538900.1|NTA538900 Nicotiana tabacum cDNA-AFLP-fragment BT2-M33-006 Length = 394 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gagaagcatttcaagaaatg 367 |||||||||||||||||||| Sbjct: 95 gagaagcatttcaagaaatg 114
>dbj|AB083028.1| Glycine max mRNA for syringolide-induced protein 1-3-1B, complete cds Length = 1243 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gagaagcatttcaagaaatg 367 |||||||||||||||||||| Sbjct: 617 gagaagcatttcaagaaatg 636
>dbj|AB083027.1| Glycine max mRNA for syringolide-induced protein 1-3-1A, complete cds Length = 1191 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gagaagcatttcaagaaatg 367 |||||||||||||||||||| Sbjct: 574 gagaagcatttcaagaaatg 593
>gb|AC149137.3| Xenopus tropicalis clone CH216-3L19, complete sequence Length = 155697 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 cagtaaagaatacaacaata 42 |||||||||||||||||||| Sbjct: 34143 cagtaaagaatacaacaata 34162
>gb|AF131817.1|AF131817 Homo sapiens clone 25023 mRNA sequence Length = 1466 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cagtaaagaatacaacaata 42 |||||||||||||||||||| Sbjct: 1423 cagtaaagaatacaacaata 1404
>gb|AE003423.2| Drosophila melanogaster chromosome X, section 7 of 74 of the complete sequence Length = 292830 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 caaccaagtccgaaatggca 259 |||||||||||||||||||| Sbjct: 20651 caaccaagtccgaaatggca 20670
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gaagagaagcatttcaagaa 364 |||||||||||||||||||| Sbjct: 2559333 gaagagaagcatttcaagaa 2559352 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,228,937 Number of Sequences: 3902068 Number of extensions: 4228937 Number of successful extensions: 134371 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134258 Number of HSP's gapped (non-prelim): 113 length of query: 396 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 374 effective length of database: 17,147,199,772 effective search space: 6413052714728 effective search space used: 6413052714728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)