ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl01g02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463541.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2421 Score = 99.6 bits (50), Expect = 7e-18 Identities = 146/178 (82%) Strand = Plus / Minus Query: 211 acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcaaagcagccctt 270 |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || | Sbjct: 2419 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 2360 Query: 271 ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgccttcga 330 | || ||| ||| |||||||||||| ||||||||||| || ||||| ||||||||| | Sbjct: 2359 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgccttgca 2300 Query: 331 gcgctcttattgtctccgcgtcgtcccgcacgatcagtttcccttctggcctcaatat 388 | | |||||||||| || | |||| ||| ||||| || ||||||||||||||||| Sbjct: 2299 gttcgtttattgtctctgcattatccctcacaatcagctttccttctggcctcaatat 2242
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 99.6 bits (50), Expect = 7e-18 Identities = 146/178 (82%) Strand = Plus / Plus Query: 211 acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcaaagcagccctt 270 |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || | Sbjct: 38379953 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 38380012 Query: 271 ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgccttcga 330 | || ||| ||| |||||||||||| ||||||||||| || ||||| ||||||||| | Sbjct: 38380013 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgccttgca 38380072 Query: 331 gcgctcttattgtctccgcgtcgtcccgcacgatcagtttcccttctggcctcaatat 388 | | |||||||||| || | |||| ||| ||||| || ||||||||||||||||| Sbjct: 38380073 gttcgtttattgtctctgcattatccctcacaatcagctttccttctggcctcaatat 38380130
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 99.6 bits (50), Expect = 7e-18 Identities = 146/178 (82%) Strand = Plus / Plus Query: 211 acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcaaagcagccctt 270 |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || | Sbjct: 140778 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 140837 Query: 271 ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgccttcga 330 | || ||| ||| |||||||||||| ||||||||||| || ||||| ||||||||| | Sbjct: 140838 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgccttgca 140897 Query: 331 gcgctcttattgtctccgcgtcgtcccgcacgatcagtttcccttctggcctcaatat 388 | | |||||||||| || | |||| ||| ||||| || ||||||||||||||||| Sbjct: 140898 gttcgtttattgtctctgcattatccctcacaatcagctttccttctggcctcaatat 140955
>dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F03, full insert sequence Length = 2826 Score = 99.6 bits (50), Expect = 7e-18 Identities = 146/178 (82%) Strand = Plus / Minus Query: 211 acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcaaagcagccctt 270 |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || | Sbjct: 2557 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 2498 Query: 271 ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgccttcga 330 | || ||| ||| |||||||||||| ||||||||||| || ||||| ||||||||| | Sbjct: 2497 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgccttgca 2438 Query: 331 gcgctcttattgtctccgcgtcgtcccgcacgatcagtttcccttctggcctcaatat 388 | | |||||||||| || | |||| ||| ||||| || ||||||||||||||||| Sbjct: 2437 gttcgtttattgtctctgcattatccctcacaatcagctttccttctggcctcaatat 2380
>dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115H24, full insert sequence Length = 2988 Score = 99.6 bits (50), Expect = 7e-18 Identities = 146/178 (82%) Strand = Plus / Minus Query: 211 acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcaaagcagccctt 270 |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || | Sbjct: 2723 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 2664 Query: 271 ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgccttcga 330 | || ||| ||| |||||||||||| ||||||||||| || ||||| ||||||||| | Sbjct: 2663 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgccttgca 2604 Query: 331 gcgctcttattgtctccgcgtcgtcccgcacgatcagtttcccttctggcctcaatat 388 | | |||||||||| || | |||| ||| ||||| || ||||||||||||||||| Sbjct: 2603 gttcgtttattgtctctgcattatccctcacaatcagctttccttctggcctcaatat 2546
>gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, complete sequence Length = 2841 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 228 tccttgggccgccacgtggtcttctggacgcaaagcagcccttccttgcccgtggcgtag 287 ||||||||||||||| | | ||||| |||||| |||| || || |||||| ||| |||| Sbjct: 2581 tccttgggccgccacatcgacttctcgacgcagagcaagccctcgttgcccttggtgtag 2522 Query: 288 gtcatgcgcacctcccactgcagggacttcgccatgccttcgagcgctcttattgtctcc 347 ||||| ||||||||||||||||||||||| ||||||| ||| || | ||||||| || Sbjct: 2521 gtcattcgcacctcccactgcagggacttggccatgctttccagttcatttattgtgtct 2462 Query: 348 gcgtcgtcccgcacgatcagtttcccttctggcctcaata 387 || ||||| ||| |||||||| |||| ||||||||||| Sbjct: 2461 gcagtgtccctcacaatcagtttgccttgtggcctcaata 2422
>gb|AY104480.1| Zea mays PCO099563 mRNA sequence Length = 2194 Score = 75.8 bits (38), Expect = 9e-11 Identities = 80/94 (85%) Strand = Plus / Minus Query: 231 ttgggccgccacgtggtcttctggacgcaaagcagcccttccttgcccgtggcgtaggtc 290 |||||||||||| | | ||||| |||||| ||||| || || ||||| ||| ||||||| Sbjct: 1883 ttgggccgccacatcgacttctcgacgcagagcaggccctcgctgcccttggtgtaggtc 1824 Query: 291 atgcgcacctcccactgcagggacttcgccatgc 324 || |||||||||||||||| |||||| ||||||| Sbjct: 1823 atccgcacctcccactgcacggacttggccatgc 1790
>emb|CT009521.5| M.truncatula DNA sequence from clone MTH2-81E13 on chromosome 3, complete sequence Length = 56728 Score = 61.9 bits (31), Expect = 1e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 226 tctccttgggccgccacgtggtcttctggacgcaaagcagcccttccttgcccgtggcgt 285 ||||||| |||||||| |||| ||||||||| || | || || ||||| || ||| || Sbjct: 16453 tctccttaggccgccaggtggacttctggacacataacaaaccctccttatccttggagt 16394 Query: 286 aggtcatgcgcacctcccactgcagggactt 316 |||||||||| ||||||||||||| |||||| Sbjct: 16393 aggtcatgcgaacctcccactgcatggactt 16363
>emb|BX248137.9| Zebrafish DNA sequence from clone DKEY-19L19, complete sequence Length = 209896 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 18 cattacattcattttacaacaaatgt 43 |||| ||||||||||||||||||||| Sbjct: 176545 catttcattcattttacaacaaatgt 176520
>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence Length = 105215 Score = 44.1 bits (22), Expect = 0.34 Identities = 28/30 (93%) Strand = Plus / Minus Query: 222 tcgatctccttgggccgccacgtggtcttc 251 ||||||||| ||||||||||||| |||||| Sbjct: 95322 tcgatctccgtgggccgccacgtcgtcttc 95293 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 gtcgtcccgcacgatcagtttccc 373 |||||||||||||||||| ||||| Sbjct: 95194 gtcgtcccgcacgatcagcttccc 95171
>emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on chromosome 3, complete sequence Length = 121689 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 gaaaaacacatacatgattctacag 97 ||||||||||| ||||||||||||| Sbjct: 37638 gaaaaacacattcatgattctacag 37614
>gb|AC003119.1|HUAC003119 Human Chromosome 16 BAC clone CIT987SK-27D10, complete sequence Length = 88036 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 tccaagcaaaagaaagaatga 66 ||||||||||||||||||||| Sbjct: 23224 tccaagcaaaagaaagaatga 23204
>gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, complete sequence Length = 139773 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 aagcaaaagaaagaatgaaag 69 ||||||||||||||||||||| Sbjct: 81804 aagcaaaagaaagaatgaaag 81784
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 49 aagcaaaagaaagaatgaaaggccgaaaa 77 ||||||||||||||| |||||||| |||| Sbjct: 1363005 aagcaaaagaaagaaagaaaggccaaaaa 1362977
>ref|NM_212200.1| Eremothecium gossypii AFR517Cp (AFR517C), mRNA Length = 2616 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 49 aagcaaaagaaagaatgaaaggccgaaaa 77 ||||||||||||||| |||||||| |||| Sbjct: 1333 aagcaaaagaaagaaagaaaggccaaaaa 1361
>ref|NM_125799.2| Arabidopsis thaliana unknown protein AT5G64030 mRNA, complete cds Length = 3031 Score = 40.1 bits (20), Expect = 5.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 338 tattgtctccgcgtcgtcccgcacgatcagtttcccttctggcctcaa 385 |||||| ||||| ||||| || || |||||||||||||| || ||||| Sbjct: 2672 tattgtttccgcatcgtctcgaactatcagtttcccttccggtctcaa 2625
>gb|AY347745.1| Physcomitrella patens Snf1 related kinase 1 (SNF1b) gene, complete cds Length = 5107 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 cattttacaacaaatgttgtccaa 50 |||||||||| ||||||||||||| Sbjct: 2937 cattttacaagaaatgttgtccaa 2914
>emb|CR382370.13| Zebrafish DNA sequence from clone DKEY-22O12 in linkage group 1, complete sequence Length = 257504 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ttacagtacagcattacatt 26 |||||||||||||||||||| Sbjct: 229746 ttacagtacagcattacatt 229765
>emb|CR388412.9| Zebrafish DNA sequence from clone CH211-69G13 in linkage group 5, complete sequence Length = 158289 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ttacagtacagcattacatt 26 |||||||||||||||||||| Sbjct: 45457 ttacagtacagcattacatt 45438
>emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chromosome X Contains a likely ortholog of mouse hepatoma-derived growth factor related protein 3 pseudogene (HDGFRP3), a novel protein similar to PAGE-5 protein (LOC203569), a novel protein similar to PAGE-5 protein (LOC139795), gene FLJ20434, a cytochrome c oxidase I (MTCO1) pseudogene, a G antigen, family D pseudogene and a CpG island, complete sequence Length = 130005 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aagcaaaagaaagaatgaaa 68 |||||||||||||||||||| Sbjct: 6596 aagcaaaagaaagaatgaaa 6577
>emb|AL513082.10| Human DNA sequence from clone RP11-229N15 on chromosome Xq24-25 Contains a ribosomal protein L3 (RPL3) pseudogene, complete sequence Length = 137154 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ccaagcaaaagaaagaatga 66 |||||||||||||||||||| Sbjct: 103487 ccaagcaaaagaaagaatga 103468
>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25, complete sequence Length = 216800 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ttacagtacagcattacatt 26 |||||||||||||||||||| Sbjct: 121961 ttacagtacagcattacatt 121980
>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25, complete sequence Length = 204383 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ttacagtacagcattacatt 26 |||||||||||||||||||| Sbjct: 123959 ttacagtacagcattacatt 123940
>emb|BX649627.10| Zebrafish DNA sequence from clone DKEY-78B7 in linkage group 3, complete sequence Length = 92147 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ttacagtacagcattacatt 26 |||||||||||||||||||| Sbjct: 80765 ttacagtacagcattacatt 80746
>emb|BX511176.6| Zebrafish DNA sequence from clone CH211-8C17 in linkage group 3, complete sequence Length = 116813 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ttacagtacagcattacatt 26 |||||||||||||||||||| Sbjct: 103428 ttacagtacagcattacatt 103409
>emb|CR556722.7| Zebrafish DNA sequence from clone CH211-195N12 in linkage group 13, complete sequence Length = 205873 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 caatgcatttgcctttttta 122 |||||||||||||||||||| Sbjct: 163844 caatgcatttgcctttttta 163863
>gb|AY125524.1| Arabidopsis thaliana AT5g64030/MBM17_13 mRNA, complete cds Length = 2856 Score = 40.1 bits (20), Expect = 5.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 338 tattgtctccgcgtcgtcccgcacgatcagtttcccttctggcctcaa 385 |||||| ||||| ||||| || || |||||||||||||| || ||||| Sbjct: 2510 tattgtttccgcatcgtctcgaactatcagtttcccttccggtctcaa 2463
>emb|BX000435.21| Zebrafish DNA sequence from clone DKEY-12L8 in linkage group 1, complete sequence Length = 201673 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ttacagtacagcattacatt 26 |||||||||||||||||||| Sbjct: 153044 ttacagtacagcattacatt 153025
>gb|AC020906.6| Homo sapiens chromosome 19 clone CTB-83J15, complete sequence Length = 110184 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 gcacctcccactgcagggac 314 |||||||||||||||||||| Sbjct: 32046 gcacctcccactgcagggac 32027
>gb|AC150559.31| Medicago truncatula clone mth2-67j8, complete sequence Length = 107641 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 ccttttttagcatcaacaagaatc 137 ||||||| |||||||||||||||| Sbjct: 97690 cctttttcagcatcaacaagaatc 97667
>emb|AL935031.12| Zebrafish DNA sequence from clone CH211-93I23, complete sequence Length = 178457 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 caatgcatttgcctttttta 122 |||||||||||||||||||| Sbjct: 27275 caatgcatttgcctttttta 27294
>emb|BX640577.17| Zebrafish DNA sequence from clone DKEY-117O14 in linkage group 14, complete sequence Length = 214178 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ttacagtacagcattacatt 26 |||||||||||||||||||| Sbjct: 145384 ttacagtacagcattacatt 145403
>gb|AC090573.6| Homo sapiens chromosome 8, clone RP11-440B23, complete sequence Length = 204032 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtccaagcaaaagaaagaat 64 |||||||||||||||||||| Sbjct: 107036 gtccaagcaaaagaaagaat 107055
>gb|AC023034.9| Homo sapiens, clone RP11-499F3, complete sequence Length = 189732 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agcaaaagaaagaatgaaag 69 |||||||||||||||||||| Sbjct: 68582 agcaaaagaaagaatgaaag 68601
>emb|BX833001.1|CNS0A1QZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL29ZA09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 439 Score = 40.1 bits (20), Expect = 5.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 338 tattgtctccgcgtcgtcccgcacgatcagtttcccttctggcctcaa 385 |||||| ||||| ||||| || || |||||||||||||| || ||||| Sbjct: 90 tattgtttccgcatcgtctcgaactatcagtttcccttccggtctcaa 43
>gb|BT003013.1| Arabidopsis thaliana At5g64030/MBM17_13 gene, complete cds Length = 2490 Score = 40.1 bits (20), Expect = 5.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 338 tattgtctccgcgtcgtcccgcacgatcagtttcccttctggcctcaa 385 |||||| ||||| ||||| || || |||||||||||||| || ||||| Sbjct: 2349 tattgtttccgcatcgtctcgaactatcagtttcccttccggtctcaa 2302
>gb|AC008394.3|AC008394 Homo sapiens chromosome 5 clone CTC_242N15, complete sequence Length = 171545 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 ttctacagctgcacaatgcatttg 113 |||||||||||||||||| ||||| Sbjct: 157682 ttctacagctgcacaatgtatttg 157659
>emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in linkage group 7, complete sequence Length = 199752 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ttttagcatcaacaagaatcatgt 141 |||| ||||||||||||||||||| Sbjct: 47092 ttttggcatcaacaagaatcatgt 47115
>dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHJ24 Length = 48622 Score = 40.1 bits (20), Expect = 5.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 338 tattgtctccgcgtcgtcccgcacgatcagtttcccttctggcctcaa 385 |||||| ||||| ||||| || || |||||||||||||| || ||||| Sbjct: 1522 tattgtttccgcatcgtctcgaactatcagtttcccttccggtctcaa 1475
>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20 Length = 91193 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aagcaaaagaaagaatgaaa 68 |||||||||||||||||||| Sbjct: 64454 aagcaaaagaaagaatgaaa 64435
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 attacattcattttacaacaaatg 42 |||||||||||||||||| ||||| Sbjct: 381838 attacattcattttacaagaaatg 381861
>emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in linkage group 19, complete sequence Length = 166128 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ttacagtacagcattacatt 26 |||||||||||||||||||| Sbjct: 90961 ttacagtacagcattacatt 90942
>emb|BX004885.4| Zebrafish DNA sequence from clone CH211-103L6, complete sequence Length = 187201 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ttacagtacagcattacatt 26 |||||||||||||||||||| Sbjct: 39594 ttacagtacagcattacatt 39613
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aggtcatgcgcacctcccac 305 |||||||||||||||||||| Sbjct: 2645279 aggtcatgcgcacctcccac 2645298
>emb|CR762424.33| Zebrafish DNA sequence from clone RP71-52E8 in linkage group 22, complete sequence Length = 178229 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ttacagtacagcattacatt 26 |||||||||||||||||||| Sbjct: 16976 ttacagtacagcattacatt 16995 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,798,565 Number of Sequences: 3902068 Number of extensions: 3798565 Number of successful extensions: 80553 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80421 Number of HSP's gapped (non-prelim): 127 length of query: 392 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 370 effective length of database: 17,147,199,772 effective search space: 6344463915640 effective search space used: 6344463915640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
