ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl01f10 |
|---|---|
| Clone Library Name | barley_pub |
>UBP8_YEAST (P50102) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)| (Ubiquitin thioesterase 8) (Ubiquitin-specific processing protease 8) (Deubiquitinating enzyme 8) Length = 471 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -2 Query: 119 HSFRCFTCKVVNFGATRTCLYCLYLG 42 ++ +C TC +N GAT CL C + G Sbjct: 42 NTMKCGTCHEINSGATFMCLQCGFCG 67
>SC23B_MOUSE (Q9D662) Protein transport protein Sec23B (SEC23-related protein B)| Length = 767 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = +1 Query: 43 PKYKQYRHVLVAPKFTTLHVKQRKE*KSP*LTSIP*LRSPEHLLPQER-RSSELSCSKT* 219 P+Y+ ++H+L AP + Q + +P + EH Q R S+++ S+T Sbjct: 678 PEYENFKHLLQAPLDDAQEILQAR-------FPMPRYINTEHGGSQARFLLSKVNPSQTH 730 Query: 220 NDVGVWGKRTGTCI 261 N++ WG+ TG I Sbjct: 731 NNLYAWGQETGAPI 744
>SC23B_HUMAN (Q15437) Protein transport protein Sec23B (SEC23-related protein B)| Length = 767 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = +1 Query: 43 PKYKQYRHVLVAPKFTTLHVKQRKE*KSP*LTSIP*LRSPEHLLPQER-RSSELSCSKT* 219 P+Y+ ++H+L AP + Q + +P + EH Q R S+++ S+T Sbjct: 678 PEYENFKHLLQAPLDDAQEILQAR-------FPMPRYINTEHGGSQARFLLSKVNPSQTH 730 Query: 220 NDVGVWGKRTGTCI 261 N++ WG+ TG I Sbjct: 731 NNLYAWGQETGAPI 744
>YK82_SCHPO (Q9HGP4) Hypothetical bromodomain protein C631.02| Length = 727 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +3 Query: 81 KIYYFTCKAAERMKIPLA---HFHTMTPKSRAFITSRETKLGTFLQQNLKRCGGVGQ 242 K+YY+ CK E LA H H K RA + + + L+ L R G+ Q Sbjct: 634 KVYYYVCKGDEIGAEALATASHTHQEKKKGRALSETEQAEKIRQLRAQLDRFSGIAQ 690
>NU4M_MYXGL (Q9G2W9) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 458 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Frame = +3 Query: 84 IYYFTCKAAERMKIPLAHFHTMTPKSRAFITSRETKLGTFLQQNLKRCGGVGQKN----R 251 I + C +A +K PL FH PK+ T + L + + GG G Sbjct: 194 ILWLGCFSALLIKTPLYGFHLWLPKAHVEATIAGSMT---LAALMLKLGGYGMIRLSLMP 250 Query: 252 YLHRPSLSNIMVS 290 +LH P LS I++S Sbjct: 251 FLHSPKLSLILIS 263
>VF11_VACCC (P21052) Protein F11| Length = 354 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = +3 Query: 192 LGTFLQQNLKRCGGVGQKNRYLHRPSLSNI 281 + F+ + +K CGGV +++ ++ SLSN+ Sbjct: 321 VNNFITKEIKNCGGVKNRDKIVNSLSLSNL 350
>MRL1_YEAST (Q06815) Mannose 6-phosphate receptor-like protein 1 precursor| Length = 381 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +3 Query: 21 LYYCSYYTQVQTVQTCPRSTK 83 L+ CSY+ +V+++ CP S K Sbjct: 213 LHNCSYFFEVRSIHACPTSNK 233
>RPOT3_NICSY (P69242) DNA-directed RNA polymerase 3, chloroplast precursor (EC| 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 3) (NsRpoT-C) Length = 977 Score = 23.9 bits (50), Expect(2) = 8.3 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -2 Query: 332 GLSVCSSLV*FVAGTDHYVRQRGSMQVPVLLP 237 G+ C LV VAG D V+Q VP+L+P Sbjct: 383 GVIECDPLV--VAGVDRTVKQMMIPYVPMLVP 412 Score = 21.9 bits (45), Expect(2) = 8.3 Identities = 9/24 (37%), Positives = 12/24 (50%) Frame = -1 Query: 168 MLWTSESWYGSELGGFSFFPLLYM 97 ML + W G + GG+ F P M Sbjct: 409 MLVPPKKWRGYDKGGYLFLPSYLM 432
>RPO3B_TOBAC (Q8L6J1) DNA-directed RNA polymerase 3B, chloroplast precursor (EC| 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 3B) (NictaRpoT3-tom) Length = 977 Score = 23.9 bits (50), Expect(2) = 8.3 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -2 Query: 332 GLSVCSSLV*FVAGTDHYVRQRGSMQVPVLLP 237 G+ C LV VAG D V+Q VP+L+P Sbjct: 382 GVIECDPLV--VAGVDRTVKQMMIPYVPMLVP 411 Score = 21.9 bits (45), Expect(2) = 8.3 Identities = 9/24 (37%), Positives = 12/24 (50%) Frame = -1 Query: 168 MLWTSESWYGSELGGFSFFPLLYM 97 ML + W G + GG+ F P M Sbjct: 408 MLVPPKKWRGYDKGGYLFLPSYLM 431
>RPO3A_TOBAC (P69243) DNA-directed RNA polymerase 3A, chloroplast precursor (EC| 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 3A) (NictaRpoT3-syl) Length = 977 Score = 23.9 bits (50), Expect(2) = 8.3 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -2 Query: 332 GLSVCSSLV*FVAGTDHYVRQRGSMQVPVLLP 237 G+ C LV VAG D V+Q VP+L+P Sbjct: 383 GVIECDPLV--VAGVDRTVKQMMIPYVPMLVP 412 Score = 21.9 bits (45), Expect(2) = 8.3 Identities = 9/24 (37%), Positives = 12/24 (50%) Frame = -1 Query: 168 MLWTSESWYGSELGGFSFFPLLYM 97 ML + W G + GG+ F P M Sbjct: 409 MLVPPKKWRGYDKGGYLFLPSYLM 432 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,464,578 Number of Sequences: 219361 Number of extensions: 1255474 Number of successful extensions: 2789 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2738 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2787 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
