ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CR382292.9| Zebrafish DNA sequence from clone DKEY-96L17 in ... 44 0.36
2emb|BX323038.3| Zebrafish DNA sequence from clone DKEYP-57D7 in ... 44 0.36
3gb|AC147027.4| Pan troglodytes BAC clone RP43-92F2 from 7, compl... 42 1.4
4gb|AC161472.4| Pan troglodytes BAC clone CH251-584L3 from chromo... 42 1.4
5emb|BX936452.24| Zebrafish DNA sequence from clone CH211-282C13 ... 42 1.4
6gb|AC000056.1| Homo sapiens BAC clone CTB-5F13 from 7, complete ... 42 1.4
7gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, com... 42 1.4
8gb|AC091485.8| Homo sapiens BAC clone RP11-434N4 from 2, complet... 42 1.4
9emb|CR388077.11| Zebrafish DNA sequence from clone CH211-286E11 ... 40 5.6
10emb|CR361543.9| Zebrafish DNA sequence from clone CH211-25E11 in... 40 5.6
11emb|AL845509.6| Human DNA sequence from clone DAQB-282H15 on chr... 40 5.6
12emb|BX284927.5| Human DNA sequence from clone DASS-105C4 on chro... 40 5.6
13emb|AL845557.1| Human DNA sequence from clone XXbac-556A18 on ch... 40 5.6
14emb|AL671511.4| Human DNA sequence from clone XXbac-154L12 on ch... 40 5.6
15emb|AL161613.23| Human DNA sequence from clone RP11-22J15 on chr... 40 5.6
16emb|AL137878.11| Human DNA sequence from clone RP11-145J3 on chr... 40 5.6
17emb|AL035445.4|HS372B18 Human DNA sequence from clone RP3-372B18... 40 5.6
18emb|BX927180.8| Human DNA sequence from clone DAMA-391O5 on chro... 40 5.6
19emb|BX548071.7| Zebrafish DNA sequence from clone DKEY-25L23 in ... 40 5.6
20emb|CR847543.13| Zebrafish DNA sequence from clone DKEY-183P4 in... 40 5.6
21gb|AC149146.3| Xenopus tropicalis clone ISB-156G23, complete seq... 40 5.6
22emb|CR759737.4| Human DNA sequence from clone DADB-285H20 on chr... 40 5.6
23gb|AC144536.4| Homo sapiens 3 BAC RP11-213K17 (Roswell Park Canc... 40 5.6
24gb|AC183273.3| Pan troglodytes BAC clone CH251-142H10 from chrom... 40 5.6
25emb|BX323602.7| Zebrafish DNA sequence from clone RP71-61H23, co... 40 5.6
26emb|BX004888.9| Zebrafish DNA sequence from clone DKEY-8F21 in l... 40 5.6
27emb|BX470204.13| Zebrafish DNA sequence from clone CH211-63C23 i... 40 5.6
28dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
29dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
30dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
31emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 i... 40 5.6
32gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 5.6
33emb|BX072550.6| Zebrafish DNA sequence from clone DKEY-24P1 in l... 40 5.6
34emb|CT009591.8| Human DNA sequence from clone DAAP-263O12 on chr... 40 5.6
35dbj|AP006242.1| Homo sapiens genomic DNA, chromosome 3, clone:RP... 40 5.6
36emb|AL731637.2|OSJN00278 Oryza sativa genomic DNA, chromosome 4,... 40 5.6
37emb|AL833797.6| Mouse DNA sequence from clone RP23-89B11 on chro... 40 5.6
38dbj|AB011968.1| Oryza sativa OsPK7 gene, complete cds 40 5.6
39dbj|AP000497.1| Homo sapiens genomic DNA, chromosome 3p21.3, clo... 40 5.6
40dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6 
>emb|CR382292.9| Zebrafish DNA sequence from clone DKEY-96L17 in linkage group 5, complete
              sequence
          Length = 178208

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 60     catgacatttattgccatgtac 81
              ||||||||||||||||||||||
Sbjct: 130498 catgacatttattgccatgtac 130519
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>emb|BX323038.3| Zebrafish DNA sequence from clone DKEYP-57D7 in linkage group 1,
             complete sequence
          Length = 87548

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 60    catgacatttattgccatgtac 81
             ||||||||||||||||||||||
Sbjct: 10888 catgacatttattgccatgtac 10867
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>gb|AC147027.4| Pan troglodytes BAC clone RP43-92F2 from 7, complete sequence
          Length = 162023

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 217    ttttttaattttatgtacaga 237
              |||||||||||||||||||||
Sbjct: 147857 ttttttaattttatgtacaga 147877
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>gb|AC161472.4| Pan troglodytes BAC clone CH251-584L3 from chromosome 7, complete
             sequence
          Length = 189756

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 217   ttttttaattttatgtacaga 237
             |||||||||||||||||||||
Sbjct: 53678 ttttttaattttatgtacaga 53698
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>emb|BX936452.24| Zebrafish DNA sequence from clone CH211-282C13 in linkage group 13,
             complete sequence
          Length = 136110

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 60    catgacatttattgccatgta 80
             |||||||||||||||||||||
Sbjct: 16063 catgacatttattgccatgta 16043
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>gb|AC000056.1| Homo sapiens BAC clone CTB-5F13 from 7, complete sequence
          Length = 84838

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 217   ttttttaattttatgtacaga 237
             |||||||||||||||||||||
Sbjct: 10252 ttttttaattttatgtacaga 10272
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>gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, complete sequence
          Length = 152668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   ttatgcacatgggttttttaa 224
             |||||||||||||||||||||
Sbjct: 40034 ttatgcacatgggttttttaa 40054
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>gb|AC091485.8| Homo sapiens BAC clone RP11-434N4 from 2, complete sequence
          Length = 112063

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 217   ttttttaattttatgtacaga 237
             |||||||||||||||||||||
Sbjct: 22705 ttttttaattttatgtacaga 22725
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>emb|CR388077.11| Zebrafish DNA sequence from clone CH211-286E11 in linkage group 8,
              complete sequence
          Length = 192705

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 54     atttaccatgacatttattgccat 77
              |||| |||||||||||||||||||
Sbjct: 181438 attttccatgacatttattgccat 181415
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>emb|CR361543.9| Zebrafish DNA sequence from clone CH211-25E11 in linkage group 8,
            complete sequence
          Length = 66809

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 54   atttaccatgacatttattgccat 77
            ||||| ||||||||||||||||||
Sbjct: 7238 atttaacatgacatttattgccat 7215
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>emb|AL845509.6| Human DNA sequence from clone DAQB-282H15 on chromosome 6 Contains the
             5' end of the Notch4 gene for Notch homolog 4
             (Drosophila), the 3' end of the C6orf10 gene for
             chromosome 6 open reading frame 10 and one CpG island,
             complete sequence
          Length = 126404

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   ttttttaattttatgtacagagaa 240
             |||| |||||||||||||||||||
Sbjct: 99413 ttttataattttatgtacagagaa 99390
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>emb|BX284927.5| Human DNA sequence from clone DASS-105C4 on chromosome 6, complete
             sequence
          Length = 108760

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   ttttttaattttatgtacagagaa 240
             |||| |||||||||||||||||||
Sbjct: 85725 ttttataattttatgtacagagaa 85702
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>emb|AL845557.1| Human DNA sequence from clone XXbac-556A18 on chromosome 6 contains the
             gene for chromosome 6 open reading frame 10 and a
             heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
             pseudogene, complete sequence
          Length = 49278

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   ttttttaattttatgtacagagaa 240
             |||| |||||||||||||||||||
Sbjct: 16614 ttttataattttatgtacagagaa 16591
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>emb|AL671511.4| Human DNA sequence from clone XXbac-154L12 on chromosome 6 contains the
             3' end of the C6ORF10 gene for chromosome 6 open reading
             frame 10 and a heterogeneous nuclear ribonucleoprotein A1
             (HNRPA1) pseudogene, complete sequence
          Length = 87294

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   ttttttaattttatgtacagagaa 240
             |||| |||||||||||||||||||
Sbjct: 54867 ttttataattttatgtacagagaa 54844
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>emb|AL161613.23| Human DNA sequence from clone RP11-22J15 on chromosome 13 Contains the
             5' end of the LATS2 gene for LATS, large tumor suppressor,
             homolog 2 (LATS (large tumor suppressor, Drosophila)
             homolog 2), a ribosomal protein S12 (40S ribosomal protein
             S12) (RPS12) pseudogene, a chromosome 9 open reading frame
             12 (C9orf12) (INSP5K2, FLJ13161)pseudogene and two CpG
             islands, complete sequence
          Length = 113372

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   acatgggttttttaatttta 229
             ||||||||||||||||||||
Sbjct: 38500 acatgggttttttaatttta 38481
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>emb|AL137878.11| Human DNA sequence from clone RP11-145J3 on chromosome 13 Contains the
             3' end of the EPSTI1 gene for epithelial stromal
             interaction 1 (breast), a  novel gene and a pseudogene,
             complete sequence
          Length = 87358

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    catgacatttattgccatgt 79
             ||||||||||||||||||||
Sbjct: 16168 catgacatttattgccatgt 16149
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>emb|AL035445.4|HS372B18 Human DNA sequence from clone RP3-372B18 on chromosome 6p21.2-22.1
             Contains an HNRPA1 (Heterogenous Nuclear Ribonucleoprotein
             A1 (Helix Destabilizing protein, HDP, HNRNP core protein
             A1)) pseudogene and the 3' end of the C6orf10 gene for
             TSBP (Testis Specific Basic Protein). Contains ESTs and
             GSSs, complete sequence
          Length = 38216

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 217   ttttttaattttatgtacagagaa 240
             |||| |||||||||||||||||||
Sbjct: 34218 ttttataattttatgtacagagaa 34241
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>emb|BX927180.8| Human DNA sequence from clone DAMA-391O5 on chromosome 6, complete
             sequence
          Length = 69474

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 217   ttttttaattttatgtacagagaa 240
             |||| |||||||||||||||||||
Sbjct: 38680 ttttataattttatgtacagagaa 38703
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>emb|BX548071.7| Zebrafish DNA sequence from clone DKEY-25L23 in linkage group 9, complete
              sequence
          Length = 223099

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 54     atttaccatgacatttattgccat 77
              ||||| ||||||||||||||||||
Sbjct: 125126 atttaacatgacatttattgccat 125149
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>emb|CR847543.13| Zebrafish DNA sequence from clone DKEY-183P4 in linkage group 8, complete
              sequence
          Length = 207382

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 54     atttaccatgacatttattgccat 77
              ||||| ||||||||||||||||||
Sbjct: 192648 atttaacatgacatttattgccat 192671
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>gb|AC149146.3| Xenopus tropicalis clone ISB-156G23, complete sequence
          Length = 96721

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  ctttccagatcatcatttaa 382
            ||||||||||||||||||||
Sbjct: 7468 ctttccagatcatcatttaa 7487
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>emb|CR759737.4| Human DNA sequence from clone DADB-285H20 on chromosome 6, complete
             sequence
          Length = 83525

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   ttttttaattttatgtacagagaa 240
             |||| |||||||||||||||||||
Sbjct: 59923 ttttataattttatgtacagagaa 59900
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>gb|AC144536.4| Homo sapiens 3 BAC RP11-213K17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152224

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 382   acaggggaggaggaggacacaggg 405
             ||||||||||||||||| ||||||
Sbjct: 52006 acaggggaggaggaggagacaggg 52029
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>gb|AC183273.3| Pan troglodytes BAC clone CH251-142H10 from chromosome 7, complete
             sequence
          Length = 180027

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    tgtgagagagatggtactac 113
             ||||||||||||||||||||
Sbjct: 66435 tgtgagagagatggtactac 66454
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>emb|BX323602.7| Zebrafish DNA sequence from clone RP71-61H23, complete sequence
          Length = 156514

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 54    atttaccatgacatttattgccat 77
             ||||| ||||||||||||||||||
Sbjct: 10463 atttaacatgacatttattgccat 10440
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>emb|BX004888.9| Zebrafish DNA sequence from clone DKEY-8F21 in linkage group 1, complete
              sequence
          Length = 219280

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 54     atttaccatgacatttattgccat 77
              ||||||| ||||||||||||||||
Sbjct: 141204 atttaccttgacatttattgccat 141181
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>emb|BX470204.13| Zebrafish DNA sequence from clone CH211-63C23 in linkage group 10,
             complete sequence
          Length = 185190

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 54    atttaccatgacatttattgccat 77
             ||||||||| ||||||||||||||
Sbjct: 65279 atttaccataacatttattgccat 65302
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 206      atgcacatgggttttttaat 225
                ||||||||||||||||||||
Sbjct: 11161734 atgcacatgggttttttaat 11161753
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 276      tggtactggaatttgttggt 295
                ||||||||||||||||||||
Sbjct: 31942663 tggtactggaatttgttggt 31942682
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>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1131G08
          Length = 158241

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    tggtactggaatttgttggt 295
              ||||||||||||||||||||
Sbjct: 128741 tggtactggaatttgttggt 128760
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>emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 in linkage group 8,
              complete sequence
          Length = 209195

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 54     atttaccatgacatttattgccat 77
              ||||| ||||||||||||||||||
Sbjct: 134576 atttaacatgacatttattgccat 134553
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 361    tgctttccagatcatcatttaaca 384
              ||||||||| ||||||||||||||
Sbjct: 592117 tgctttccatatcatcatttaaca 592094
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>emb|BX072550.6| Zebrafish DNA sequence from clone DKEY-24P1 in linkage group 15,
             complete sequence
          Length = 229061

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 54    atttaccatgacatttattgccat 77
             ||||| ||||||||||||||||||
Sbjct: 79692 atttaacatgacatttattgccat 79715
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>emb|CT009591.8| Human DNA sequence from clone DAAP-263O12 on chromosome 6, complete
             sequence
          Length = 80114

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   ttttttaattttatgtacagagaa 240
             |||| |||||||||||||||||||
Sbjct: 60738 ttttataattttatgtacagagaa 60715
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>dbj|AP006242.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-713K14, complete
              sequence
          Length = 167380

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 382    acaggggaggaggaggacacaggg 405
              ||||||||||||||||| ||||||
Sbjct: 158625 acaggggaggaggaggagacaggg 158602
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>emb|AL731637.2|OSJN00278 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I09,
             complete sequence
          Length = 141580

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   atgcacatgggttttttaat 225
             ||||||||||||||||||||
Sbjct: 30358 atgcacatgggttttttaat 30377
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>emb|AL833797.6| Mouse DNA sequence from clone RP23-89B11 on chromosome 2, complete
              sequence
          Length = 165400

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 381    aacaggggaggaggaggacacagg 404
              |||||||||||||||||| |||||
Sbjct: 136717 aacaggggaggaggaggagacagg 136694
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>dbj|AB011968.1| Oryza sativa OsPK7 gene, complete cds
          Length = 5816

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 276  tggtactggaatttgttggt 295
            ||||||||||||||||||||
Sbjct: 1269 tggtactggaatttgttggt 1250
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>dbj|AP000497.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:301 to 308,
             anti-oncogene region, section 5/5
          Length = 146596

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 382   acaggggaggaggaggacacaggg 405
             ||||||||||||||||| ||||||
Sbjct: 85660 acaggggaggaggaggagacaggg 85637
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>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0460E08
          Length = 170021

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   tggtactggaatttgttggt 295
             ||||||||||||||||||||
Sbjct: 39390 tggtactggaatttgttggt 39409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,147,341
Number of Sequences: 3902068
Number of extensions: 5147341
Number of successful extensions: 111321
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111140
Number of HSP's gapped (non-prelim): 181
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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