Clone Name | rbastl01f02 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ131403.1|PVI131403 Potato virus A RNA complete genome, isolate TamMV Length = 9605 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 ccatttccagtgctccactat 49 ||||||||||||||||||||| Sbjct: 2609 ccatttccagtgctccactat 2589
>gb|AC092547.7| Homo sapiens 3q BAC RP11-371L14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178328 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 ggcacataaacattaaaaact 315 ||||||||||||||||||||| Sbjct: 92346 ggcacataaacattaaaaact 92366
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 acataaacattaaaaactaga 318 ||||||||||||||||||||| Sbjct: 16847337 acataaacattaaaaactaga 16847357
>gb|AC093798.3| Homo sapiens BAC clone RP11-306N14 from 2, complete sequence Length = 233877 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cactataaatatcaatggata 64 ||||||||||||||||||||| Sbjct: 41306 cactataaatatcaatggata 41286
>gb|AC092845.6| Homo sapiens BAC clone RP11-480J15 from 2, complete sequence Length = 85660 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 atcaatggatacctgggaggg 74 ||||||||||||||||||||| Sbjct: 1935 atcaatggatacctgggaggg 1915
>gb|AC026815.8|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079L16 genomic sequence, complete sequence Length = 147452 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 acataaacattaaaaactaga 318 ||||||||||||||||||||| Sbjct: 31789 acataaacattaaaaactaga 31809
>gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complete sequence Length = 173169 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 atcaatggatacctgggaggg 74 ||||||||||||||||||||| Sbjct: 173104 atcaatggatacctgggaggg 173084
>gb|AC007510.6|AC007510 Homo sapiens chromosome 17, clone hRPK.678_P_16, complete sequence Length = 156420 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 ggcacataaacattaaaaact 315 ||||||||||||||||||||| Sbjct: 105046 ggcacataaacattaaaaact 105026
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 acataaacattaaaaactaga 318 ||||||||||||||||||||| Sbjct: 16856377 acataaacattaaaaactaga 16856397
>gb|AC124576.4| Mus musculus BAC clone RP23-162H6 from chromosome 16, complete sequence Length = 233527 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gtaaaaagaagagacaggaa 250 |||||||||||||||||||| Sbjct: 228327 gtaaaaagaagagacaggaa 228346
>gb|AC127246.3| Mus musculus BAC clone RP24-424L20 from chromosome 16, complete sequence Length = 181475 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gtaaaaagaagagacaggaa 250 |||||||||||||||||||| Sbjct: 74304 gtaaaaagaagagacaggaa 74285
>gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosome 16, complete sequence Length = 181338 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gtaaaaagaagagacaggaa 250 |||||||||||||||||||| Sbjct: 122502 gtaaaaagaagagacaggaa 122483
>emb|AL359748.11| Human DNA sequence from clone RP11-158C4 on chromosome 13, complete sequence Length = 39764 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cttccatttccagtgctcca 45 |||||||||||||||||||| Sbjct: 24124 cttccatttccagtgctcca 24143
>gb|AC136504.23| Medicago truncatula clone mth2-13m6, complete sequence Length = 107180 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 acatgacacatctataaaat 94 |||||||||||||||||||| Sbjct: 60900 acatgacacatctataaaat 60919
>gb|BC056513.1| Danio rerio La ribonucleoprotein domain family, member 1, mRNA (cDNA clone IMAGE:6788848), partial cds Length = 2500 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 ccagttcatccactgcacagagtt 363 |||||||||||||||| ||||||| Sbjct: 656 ccagttcatccactgcccagagtt 679
>emb|BX548163.15| Zebrafish DNA sequence from clone CH211-135J7 in linkage group 10, complete sequence Length = 132400 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 cacataaacattaaaaacta 316 |||||||||||||||||||| Sbjct: 98929 cacataaacattaaaaacta 98948
>emb|BX890605.4| Mouse DNA sequence from clone RP23-29K12 on chromosome 2, complete sequence Length = 148620 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 agaagagacaggaaggcccc 256 |||||||||||||||||||| Sbjct: 87876 agaagagacaggaaggcccc 87895
>gb|AC007684.3| Homo sapiens BAC clone RP11-449G16 from 2, complete sequence Length = 196848 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 tacctggtcctaataaaaacaaat 186 ||||||||||||||||||| |||| Sbjct: 70952 tacctggtcctaataaaaaaaaat 70929
>gb|AC006210.4| Homo sapiens X BAC GS1-309P15 (Genome Systems Human BAC Library) complete sequence Length = 185638 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 atgacacatctataaaatgtccaa 100 ||||||||||||||| |||||||| Sbjct: 65207 atgacacatctataatatgtccaa 65184
>gb|AC140780.3| Mus musculus BAC clone RP24-500J16 from chromosome 5, complete sequence Length = 166260 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ataaacattaaaaactagat 319 |||||||||||||||||||| Sbjct: 145979 ataaacattaaaaactagat 145960
>emb|CT573324.3| CH251-10E6, complete sequence Length = 169419 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 atgacacatctataaaatgtccaa 100 ||||||||||||||| |||||||| Sbjct: 61717 atgacacatctataatatgtccaa 61694
>emb|CR385063.6| Zebrafish DNA sequence from clone CH211-250G4 in linkage group 19, complete sequence Length = 72609 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gagggacatgacacatctat 89 |||||||||||||||||||| Sbjct: 51430 gagggacatgacacatctat 51449
>gb|AC150747.2| Mus musculus BAC clone RP23-249E15 from 5, complete sequence Length = 209364 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 ataaacattaaaaactagat 319 |||||||||||||||||||| Sbjct: 181515 ataaacattaaaaactagat 181534
>emb|AL929494.8| Zebrafish DNA sequence from clone CH211-127N19 in linkage group 20, complete sequence Length = 98841 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cacataaacattaaaaacta 316 |||||||||||||||||||| Sbjct: 68357 cacataaacattaaaaacta 68338 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,307,566 Number of Sequences: 3902068 Number of extensions: 4307566 Number of successful extensions: 83138 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83031 Number of HSP's gapped (non-prelim): 107 length of query: 386 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 364 effective length of database: 17,147,199,772 effective search space: 6241580717008 effective search space used: 6241580717008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)