>YDDA_ECOLI (P31826) Inner membrane ABC transporter ATP-binding protein yddA|
           (CDS102)
          Length = 561

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +1

Query: 160 VPISPSLSLQPELCIWKP*WRKKSVKHKTGVLYGMTILSMLL 285
           +PI+  + +   LC+ KP W +K+  +KT VL  + IL+M+L
Sbjct: 4   IPITLRMLIAKYLCLLKPFWLRKN--NKTSVLLIIIILAMIL 43

>COQ9A_XENLA (Q3B8B2) Ubiquinone biosynthesis protein COQ9-A, mitochondrial|
           precursor
          Length = 317

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 199 IILVAKRAREILVQPFFLVPFSLW 128
           ++L+  R R +L+QPF L+P   W
Sbjct: 17  LLLMVARRRPVLMQPFLLMPRKFW 40

>PYR1_DICDI (P20054) Protein PYR1-3 [Includes: Glutamine-dependent|
            carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate
            carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC
            3.5.2.3)]
          Length = 2185

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 105  SVPAAILRH-NENGTKKKGCTNISLALFATRIMYMETLVAKKKCQA 239
            S+P  I++  NE G ++K  TNI   L  T ++Y+ T V K++ Q+
Sbjct: 2069 SMPTEIIKELNEKGIEQKEYTNIESILPTTNVLYV-TRVQKERFQS 2113

>FUSC3_FUSCU (Q8J1X7) Allergen Fus c 3|
          Length = 450

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 22/65 (33%), Positives = 26/65 (40%)
 Frame = -1

Query: 209 FHIHNSGCKESEGDIGTAFFFGSVFVVAQDSCGHTASVCKFAFWSHPTYTQPRMMMNE*M 30
           FH  ++    S     TA F G V     DS GH AS  K    SH   + P   +NE  
Sbjct: 201 FHYEHNIVSPSSIHPSTAHFDGEVPSQWDDSLGHGASTPKVRTPSHHVSSNPWAEINEPT 260

Query: 29  DGRVD 15
            G  D
Sbjct: 261 GGDND 265

>LEP4_LEGPN (O68433) Type 4 prepilin-like proteins leader peptide-processing|
           enzyme [Includes: Leader peptidase (EC 3.4.23.43)
           (Prepilin peptidase); N-methyltransferase (EC 2.1.1.-)]
          Length = 287

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 56  VVYKLGVTKRRIYKR*QCARSYPAPQRKRNQKKRLYQYLPRSLC 187
           ++Y+L +  +  +K  QC   +   QRK  +K +L  +LPRS C
Sbjct: 31  IIYRLPIILQEEWKE-QCCELFHFEQRK--EKIKLNLFLPRSFC 71

>MRAY_LACAC (Q5FKV4) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 322

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -1

Query: 248 PVLCLTLFFRH*GFHIHNSGCKESEGDIGTAFFFGSVFVVAQDSCGHTASVCKFAFWSH 72
           PVL   +   H G  I + G K  +   GT    G++FV+A        SV   A W H
Sbjct: 23  PVLINFMHSHHEGQEIRDEGPKWHQKKSGTPTMGGTIFVIAA-----VISVIWVAAWQH 76

>YHJ6_YEAST (P38770) Hypothetical 53.4 kDa protein in SLT2-PUT2 intergenic|
           region
          Length = 471

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 92  YKR*QCARSYPAPQRKRNQKKRL-YQYLPRSLCNQNYVYGNPSGEKKVSSTKP 247
           +K  Q A ++ +   KR  + R  YQ +  S    NY Y +  G K  S TKP
Sbjct: 207 HKSSQYANAFDSEIIKRELRSRSKYQPIQVSFNTHNYFYSDKDGIKTYSLTKP 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,091,193
Number of Sequences: 219361
Number of extensions: 1201095
Number of successful extensions: 3074
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3074
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)