ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl01e11 |
|---|---|
| Clone Library Name | barley_pub |
>PSA72_DROME (Q24178) Proteasome subunit alpha type 7-1A (EC 3.4.25.1)| (Testis-specific proteasome 28 kDa subunit 1A) (Testis-specific alpha4-t1 proteasome subunit) Length = 249 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = +3 Query: 87 CSEHGPFGVHCIVGTTSQEGSLWQRLLPTKSSDVAQQADLIYNSPTGIFW-YNIT----W 251 C+ PFG+ C++G +GS A L + P+GIF Y T W Sbjct: 123 CNGRRPFGISCLIGGIDADGS----------------ARLFHTEPSGIFHEYKATATGRW 166 Query: 252 ISTIYSF 272 +T+ F Sbjct: 167 ANTVREF 173
>ARY2_MOUSE (P50295) Arylamine N-acetyltransferase 2 (EC 2.3.1.5) (Arylamide| acetylase 2) (N-acetyltransferase type 2) (NAT-2) Length = 290 Score = 29.6 bits (65), Expect = 2.0 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 75 AQQFCSEHGPFGVHCIVGTT 134 ++ FCS P GVHC+VG+T Sbjct: 219 SKSFCSLQTPEGVHCLVGST 238
>ARY2_MESAU (P50293) Arylamine N-acetyltransferase 2 (EC 2.3.1.5) (Arylamide| acetylase 2) (Arylamine N-acetyltransferase, polymorphic) (PNAT) (N-acetyltransferase type 2) (NAT-2) (AT-2) Length = 290 Score = 28.9 bits (63), Expect = 3.5 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +3 Query: 75 AQQFCSEHGPFGVHCIVGTT 134 ++ FCS P GVHC+VG T Sbjct: 219 SKSFCSLQTPEGVHCLVGCT 238
>RPOC1_ZYGCR (Q32RG1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 715 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = +3 Query: 159 RLLPTKSSDVAQQADLIYNSPTGIFWYNITWISTIYSFANSIW 287 RLLPT+S ++ ++ P +F ++ W S + +F + W Sbjct: 159 RLLPTQSKLYKDRSQSTFDKPLELFLFDEPWQSALSNFFSPKW 201
>GUX1_HUMGT (P15828) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)| (Exocellobiohydrolase I) (1,4-beta-cellobiohydrolase) (Beta-glucancellobiohydrolase) Length = 525 Score = 28.5 bits (62), Expect = 4.6 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 7/70 (10%) Frame = -1 Query: 205 RSACCATSEDFVGSSRCHKEPSWLVVPTMQCTPNGPC-------SLQNCWAWDINVSFAA 47 + AC T+E H SW +CT G C +L + W W VS + Sbjct: 19 QQACSLTTER-------HPSLSW-----NKCTAGGQCQTVQASITLDSNWRWTHQVSGST 66 Query: 46 SLYMGRKLET 17 + Y G K +T Sbjct: 67 NCYTGNKWDT 76
>E434_ADECT (P87568) Early E4 30 kDa protein| Length = 259 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -1 Query: 139 WLVVPTMQCTPNGPCSLQNCWAW 71 WLV+ C+ CSL+NC W Sbjct: 177 WLVLKCKSCSLQNYCSLKNCAVW 199
>ARY1_HUMAN (P18440) Arylamine N-acetyltransferase 1 (EC 2.3.1.5) (Arylamide| acetylase 1) (Arylamine N-acetyltransferase, monomorphic) (MNAT) (N-acetyltransferase type 1) (NAT-1) Length = 290 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +3 Query: 75 AQQFCSEHGPFGVHCIVGTT 134 ++ FCS P GVHC+VG T Sbjct: 219 SKSFCSLQTPDGVHCLVGFT 238
>RNH_SALTY (P0A2B9) Ribonuclease HI (EC 3.1.26.4) (RNase HI) (Ribonuclease H)| (RNase H) Length = 155 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = -2 Query: 186 HQKTL*AVVVATRNLPGLLFLQCSALQMVRVHCKIAGHGISMLVLQLVCIWGGNWK 19 H+KT T N L AL+ ++ HC++ S V Q + W NWK Sbjct: 31 HEKTFSEGYTLTTNNRMELMAAIVALEALKEHCEVTLSTDSQYVRQGITQWIHNWK 86
>RNH_SALTI (P0A2C0) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 155 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = -2 Query: 186 HQKTL*AVVVATRNLPGLLFLQCSALQMVRVHCKIAGHGISMLVLQLVCIWGGNWK 19 H+KT T N L AL+ ++ HC++ S V Q + W NWK Sbjct: 31 HEKTFSEGYTLTTNNRMELMAAIVALEALKEHCEVTLSTDSQYVRQGITQWIHNWK 86
>RNH_SALPA (Q5PFD8) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 155 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = -2 Query: 186 HQKTL*AVVVATRNLPGLLFLQCSALQMVRVHCKIAGHGISMLVLQLVCIWGGNWK 19 H+KT T N L AL+ ++ HC++ S V Q + W NWK Sbjct: 31 HEKTFSEGYTLTTNNRMELMAAIVALEALKEHCEVTLSTDSQYVRQGITQWIHNWK 86
>VE1_BPV3 (Q8BDD7) Replication protein E1| Length = 613 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/43 (25%), Positives = 23/43 (53%) Frame = +3 Query: 150 LWQRLLPTKSSDVAQQADLIYNSPTGIFWYNITWISTIYSFAN 278 L+Q++L +++D+ + I + P FW+ + S + F N Sbjct: 257 LFQQILQVENNDMLLEPPKIKSLPAATFWWKLRHSSAAFLFGN 299
>CAN10_RAT (Q9ES66) Calpain-10 (EC 3.4.22.-) (Calcium-activated neutral| proteinase 10) (CANP 10) Length = 666 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/47 (29%), Positives = 20/47 (42%) Frame = +3 Query: 96 HGPFGVHCIVGTTSQEGSLWQRLLPTKSSDVAQQADLIYNSPTGIFW 236 H P+G C G + G W ++ P K S++ Q G FW Sbjct: 262 HNPWGRRCWQGLWREGGEGWNQVEPAKESELLAQLQ------EGEFW 302
>CAN10_MOUSE (Q9ESK3) Calpain-10 (EC 3.4.22.-) (Calcium-activated neutral| proteinase 10) (CANP 10) Length = 666 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/47 (29%), Positives = 20/47 (42%) Frame = +3 Query: 96 HGPFGVHCIVGTTSQEGSLWQRLLPTKSSDVAQQADLIYNSPTGIFW 236 H P+G C G + G W ++ P K S++ Q G FW Sbjct: 262 HNPWGRRCWQGLWREGGEGWNQVEPAKESELLAQLQ------EGEFW 302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,225,508 Number of Sequences: 219361 Number of extensions: 962884 Number of successful extensions: 2258 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2206 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2258 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
