>emb|AL121761.5|HSJ122P22 Human DNA sequence from clone RP1-122P22 on chromosome 20 Contains the 3'
              end the SLC24A3 gene for solute carrier family 24
              (sodium/potassium/calcium exchanger) member 3, a novel gene
              and a CpG island, complete sequence
          Length = 118990

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 193    agcaagcagacctaatttaca 213
              |||||||||||||||||||||
Sbjct: 117220 agcaagcagacctaatttaca 117240

>gb|AC161207.4| Mus musculus chromosome 1, clone RP23-66G23, complete sequence
          Length = 197037

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    atatgtttccagtttcctccc 34
             |||||||||||||||||||||
Sbjct: 30787 atatgtttccagtttcctccc 30807

>gb|AC068780.31| Homo sapiens 12 BAC RP11-163B7 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 105836

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 105 tttggagtgcactgcattgta 125
           |||||||||||||||||||||
Sbjct: 101 tttggagtgcactgcattgta 121

>gb|AC018788.10| Homo sapiens chromosome , clone RP11-24E9, complete sequence
          Length = 146883

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   ataacattacctggatctcaa 258
             |||||||||||||||||||||
Sbjct: 95912 ataacattacctggatctcaa 95892

>gb|AC138331.4| Homo sapiens 12 BAC RP11-781A6 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 113301

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  tttggagtgcactgcattgta 125
            |||||||||||||||||||||
Sbjct: 7616 tttggagtgcactgcattgta 7636

>emb|BX571961.11| Zebrafish DNA sequence from clone DKEY-205O12 in linkage group 22,
             complete sequence
          Length = 149478

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 253   tctcaaccatctacagctttg 273
             |||||||||||||||||||||
Sbjct: 32686 tctcaaccatctacagctttg 32666

>gb|AC112941.7| Mus musculus chromosome 1, clone RP23-466C15, complete sequence
          Length = 166705

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     atatgtttccagtttcctccc 34
              |||||||||||||||||||||
Sbjct: 105303 atatgtttccagtttcctccc 105323

>emb|BX571946.9| Zebrafish DNA sequence from clone DKEY-232H18 in linkage group 22,
             complete sequence
          Length = 179796

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 253   tctcaaccatctacagctttg 273
             |||||||||||||||||||||
Sbjct: 68015 tctcaaccatctacagctttg 68035

>gb|AY762599.1| Sus scrofa signal processing protein mRNA, partial cds
          Length = 1128

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 99  catctacagctttgccaaca 118

>gb|AC137104.11| Mus musculus chromosome 1, clone RP23-241K20, complete sequence
          Length = 171622

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   catctacagctttgccaaca 279
             ||||||||||||||||||||
Sbjct: 73026 catctacagctttgccaaca 73007

>ref|XM_581577.2| PREDICTED: Bos taurus chitinase-like protein 1 (CLP-1), transcript
           variant 1 (CLP-1), mRNA
          Length = 1527

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 234 catctacagctttgccaaca 253

>ref|XM_876311.1| PREDICTED: Bos taurus chitinase-like protein 1 (CLP-1), transcript
           variant 4 (CLP-1), mRNA
          Length = 1647

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 228 catctacagctttgccaaca 247

>ref|XM_865491.1| PREDICTED: Bos taurus chitinase-like protein 1 (CLP-1), transcript
           variant 2 (CLP-1), mRNA
          Length = 1745

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 269 catctacagctttgccaaca 288

>gb|BC003780.1| Mus musculus chitinase 3-like 1, mRNA (cDNA clone MGC:6002
           IMAGE:3601796), complete cds
          Length = 1651

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 222 catctacagctttgccaaca 241

>gb|AY295929.2| Bubalus bubalis mammary gland protein 40 mRNA, partial cds
          Length = 1199

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 99  catctacagctttgccaaca 118

>emb|CT010283.1| Mus musculus full open reading frame cDNA clone RZPDo836H0751D for
           gene Chi3l1, Chitinase 3-like 1; complete cds, incl.
           stopcodon
          Length = 1146

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 162 catctacagctttgccaaca 181

>gb|AY392761.1| Ovis aries signal processing protein mRNA, partial cds
          Length = 1086

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 99  catctacagctttgccaaca 118

>ref|NM_007695.1| Mus musculus chitinase 3-like 1 (Chi3l1), mRNA
          Length = 1664

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 233 catctacagctttgccaaca 252

>emb|AL353593.33| Human DNA sequence from clone RP5-1139B12 on chromosome 1q42.1-43
             Contains part of the OBSCN gene for obscurin cytoskeletal
             calmodulin and titin-interacting RhoGEF protein and four
             CpG islands, complete sequence
          Length = 135964

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   acctggatctcaaccatcta 265
             ||||||||||||||||||||
Sbjct: 89747 acctggatctcaaccatcta 89728

>emb|Z47803.1|SSGP38KD S.scrofa 38kDa heparin-binding glycoprotein
          Length = 1733

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 228 catctacagctttgccaaca 247

>emb|X93035.1|MMBRP39 M.musculus mRNA for BRP39 protein
          Length = 1616

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 227 catctacagctttgccaaca 246

>emb|X74476.1|HPV34 Human papillomavirus type 34 genomic DNA
          Length = 7723

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   atatgtttccagtttcctcc 33
            ||||||||||||||||||||
Sbjct: 2169 atatgtttccagtttcctcc 2150

>gb|BC004734.1| Mus musculus chitinase 3-like 1, mRNA (cDNA clone MGC:7912
           IMAGE:3583267), complete cds
          Length = 1641

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 213 catctacagctttgccaaca 232

>emb|AJ314905.1|HSA314905 Homo sapiens partial OBSCN gene for obscurin, exons 31-56
          Length = 34667

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   acctggatctcaaccatcta 265
             ||||||||||||||||||||
Sbjct: 20734 acctggatctcaaccatcta 20715

>gb|BC005611.1| Mus musculus chitinase 3-like 1, mRNA (cDNA clone MGC:7884
           IMAGE:3582304), complete cds
          Length = 1664

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 233 catctacagctttgccaaca 252

>dbj|AK155412.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630225K06
           product:chitinase 3-like 1, full insert sequence
          Length = 1628

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 226 catctacagctttgccaaca 245

>ref|NM_053560.1| Rattus norvegicus chitinase 3-like 1 (Chi3l1), mRNA
          Length = 1688

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 218 catctacagctttgccaaca 237

>gb|AY291312.2| Bos taurus signal processing protein mRNA, partial cds
          Length = 1086

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 99  catctacagctttgccaaca 118

>gb|AY081150.1| Capra hircus BP40 precursor, mRNA, complete cds
          Length = 1281

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 178 catctacagctttgccaaca 197

>dbj|AK051475.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130051O18 product:SIMILAR TO
           CHITINASE 3-LIKE 1 (CARTILAGE GLYCOPROTEIN-39), full
           insert sequence
          Length = 1628

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 227 catctacagctttgccaaca 246

>gb|BC091365.1| Rattus norvegicus chitinase 3-like 1, mRNA (cDNA clone MGC:109420
           IMAGE:7319171), complete cds
          Length = 1688

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 218 catctacagctttgccaaca 237

>ref|NM_001001540.1| Sus scrofa 38 kDa heparin-binding glycoprotein (GP38K), mRNA
          Length = 1733

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 228 catctacagctttgccaaca 247

>gb|BT021835.1| Bos taurus chitinase 3-like 1 (cartilage glycoprotein-39) (CHI3L1),
           mRNA, complete cds
          Length = 1749

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 274 catctacagctttgccaaca 293

>emb|BX004821.5| Zebrafish DNA sequence from clone CH211-171A11 in linkage group 19,
             complete sequence
          Length = 127311

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    cagtttcctccccatataca 42
             ||||||||||||||||||||
Sbjct: 27011 cagtttcctccccatataca 27030

>gb|AF062038.1|AF062038 Rattus norvegicus glycoprotein-39 precursor, mRNA, partial cds
          Length = 1056

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 99  catctacagctttgccaaca 118

>gb|AF011373.1|AF011373 Bos taurus chitinase-like protein 1 (CLP-1) mRNA, partial cds
          Length = 997

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 90  catctacagctttgccaaca 109

>gb|U19900.1|SSU19900 Sus scrofa 38kDa heparin-binding glycoprotein mRNA, complete cds
          Length = 1733

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 catctacagctttgccaaca 279
           ||||||||||||||||||||
Sbjct: 228 catctacagctttgccaaca 247

>gb|AC091144.12| Homo sapiens chromosome 8, clone RP11-359B20, complete sequence
          Length = 185872

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    ccatgcccagcaattttgca 90
             ||||||||||||||||||||
Sbjct: 28021 ccatgcccagcaattttgca 28002


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,702,675
Number of Sequences: 3902068
Number of extensions: 2702675
Number of successful extensions: 49670
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49628
Number of HSP's gapped (non-prelim): 42
length of query: 295
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 273
effective length of database: 17,147,199,772
effective search space: 4681185537756
effective search space used: 4681185537756
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)